!109: Add a way to retrieve protocol definition files

Removes bob.extension's get_file().

Be more lenient with the dependencies version pinning.

!99: remove sampleloaders and prepare for bob.bio.base!300

Needed for bob.bio.base!300

!102: Ci refactoring

Refactoring of the CI process.

Linked to Issue #42

!104: Bob extension replacement

Part of the replacement of bob.extension to exposed and auto-intersphinx. Related to #43.

!103: Add protocols as classmethod for FileListDatabase

Allows inheriting classes to retrieve a default protocols definition file and list protocols.

!105: [utils.py] changed return type in check_parameters_for_validity to ensure that a list is returned

Closes #44

!106: Update deprecated dask-jobqueue names

Parameters from dask-jobqueue's classes (Job and JobQueueCluster) will change name soon. This follows those changes (job_extra to job_extra_directives and env_extra to job_script_prologue.

A config option (jobqueue.sge.job-extra) became invalid due to the name changes and returned None which was not handled correctly, making the submit commands fail silently and the scheduler waiting for the jobs. The option is now renamed.

!108: Change UserDefaults calls to match last implementation

Changed UserDefaults calls to match the last implementation done in the package exposed.

!109: Add a way to retrieve protocol definition files

Removes bob.extension's get_file().

!110: Modifying rc file name to bobrc.toml

!111: [pyproject.toml] Changing documentation link to master/sphinx

!112: Replace clapp by clapper.

!113: meta [entry-points]: Revert dask.client group name

Switch back to dask.client instead of bob.pipelines.dask.client for

the dask Client entry-points group name in pyproject.toml.

Fixes #46.

!114: meta [readme]: Switch the README.rst to markdown

Renames README.rst to README.md to be supported by the release script.

!115: meta(deps): add bob as dependency in new structure

Adapt to the new structure of bob with bob/bob on top.