Commits · 7e55b4be45777847d94650007c601d0ff08ce6cb · medai / software / mednet

May 09, 2023
- Replaced imports of pytorch_lightning py lightning.pytorch · 7e55b4be
  Daniel CARRON authored 1 year ago
  
  7e55b4be
- Added pytorch-lightning to auto intersphinx · 06ff7884
  Daniel CARRON authored 1 year ago
  
  06ff7884
- Fixed typo in docstring · 27647fcc
  Daniel CARRON authored 1 year ago
  
  27647fcc
May 08, 2023
- Updated accelerator selection during prediction · 0a858361
  Daniel CARRON authored 1 year ago
  
  0a858361
- Convert labels to float instead of double · 55f4eac1
  Daniel CARRON authored 1 year ago
  
  55f4eac1
- Updated submodule · 4964077c
  Daniel CARRON authored 1 year ago
  
  4964077c
- Updated model paths in tests · c41430c7
  Daniel CARRON authored 1 year ago
  
  c41430c7
- Fix saving and loading model hyperparameters · 99356e82
  Daniel CARRON authored 1 year ago
  
  99356e82
Apr 18, 2023

Fixed accelerator assignement · d711a4fa

Daniel CARRON authored 1 year ago

The CUDA_VISIBLE_DEVICES environement variable is set if a device is
specified or we raise an error if it has not been set.
Code for accelerator handling has been moved to its own utils script.

d711a4fa

Apr 17, 2023
- Assign CUDA_VISIBLE_DEVICES if device specified · 2a7513e8
  Daniel CARRON authored 1 year ago
  
  2a7513e8
- Cast device number to int · f53b7d95
  Daniel CARRON authored 1 year ago
  
  f53b7d95
Apr 12, 2023
- Updated tests · c60bd4f0
  Daniel CARRON authored 1 year ago
  
  c60bd4f0
- Removed checkpointer tests as we are using the lightning callback · 51efda26
  Daniel CARRON authored 1 year ago
  
  51efda26
- Get epochs from checkpointer and moved checkpointer selection code · bf25f806
  Daniel CARRON authored 1 year ago
  
  bf25f806
- Changed default accelerator · a4e335c1
  Daniel CARRON authored 1 year ago
  
  a4e335c1
- Re-added device/accelerator selection · 8852fa7f
  Daniel CARRON authored 1 year ago
  
  8852fa7f
- Removed unused arguments · c2c4286d
  Daniel CARRON authored 1 year ago
  
  c2c4286d
- Removed unused functions · e1215e99
  Daniel CARRON authored 1 year ago
  
  e1215e99
- Resume training from checkpoints · b42b73d7
  Daniel CARRON authored 1 year ago
  
  b42b73d7
Apr 11, 2023
- Removed custom checkpointer, saving missing files · 85da2f49
  Daniel CARRON authored 1 year ago
  
  85da2f49
- Moved densenet_rs to lightning · d20d2311
  Daniel CARRON authored 1 year ago
  
  d20d2311
- Properly save/load criterion · 029a57a9
  Daniel CARRON authored 1 year ago
  
  029a57a9
- Moved logistic_regression model to lightning · e7446664
  Daniel CARRON authored 1 year ago
  
  e7446664
- Moved signs_to_tb model to lightning · 6bb7ac55
  Daniel CARRON authored 1 year ago
  
  6bb7ac55
- Moved alexnet_pretrained to lightning · ff712757
  Daniel CARRON authored 1 year ago
  
  ff712757
- Added missing "pretrained" argument · 709304f8
  Daniel CARRON authored 1 year ago
  
  709304f8
- Renamed optimizer_params to optimizer_configs · 729a7e9b
  Daniel CARRON authored 1 year ago
  
  729a7e9b
- Moved densenet_pretrained to lightning · c5f71ad4
  Daniel CARRON authored 1 year ago
  
  c5f71ad4
- Moved alexnet model to lightning · 1099d715
  Daniel CARRON authored 1 year ago
  
  1099d715
- Renamed optimizer_params to optimizer_configs · 4f3105a7
  Daniel CARRON authored 1 year ago
  
  4f3105a7
- Moved prediction to lightning · e8d70f15
  Daniel CARRON authored 1 year ago
  
  Some DensenetRS-specific code has been removed from predictor.py, it will have to be re-added directly inside the forward of the DensenetRS model.
  e8d70f15
- Moved train.py to lightning · 9d36fa1f
  Daniel CARRON authored 1 year ago
  
  9d36fa1f
- Fixed loading of learning rate · 7ed6145b
  Daniel CARRON authored 1 year ago
  
  7ed6145b
- Moved densenet to lightning · 6290c1bd
  Daniel CARRON authored 1 year ago
  
  6290c1bd
Apr 06, 2023
- Added pytorch-lightning to pasa model and trainer · a61efdb4
  Daniel CARRON authored 1 year ago
  
  a61efdb4
Mar 22, 2023
- Merge branch 'lowest-validation-loss' into 'main' · ee7b9636
  André Anjos authored 2 years ago
  
  Lowest validation loss Closes #2 See merge request biosignal/software/ptbench!3
  ee7b9636
Mar 21, 2023
- updated formatting · 2dabd075
  ogueler@idiap.ch authored 2 years ago
  
  2dabd075
- relaxed saving checkpoint occurence assert · fe9311e0
  ogueler@idiap.ch authored 2 years ago
  
  fe9311e0
- removed an indeterministic check in test · adeef8b2
  ogueler@idiap.ch authored 2 years ago
  
  adeef8b2
- Merge branch 'checkpointing-cleanup' into 'main' · 0b9ae46c
  André Anjos authored 2 years ago
  
  Checkpointing cleanup See merge request biosignal/software/ptbench!2
  0b9ae46c