[test/test_cli] updated unit tests for training, prediction and evaluation cli scripts. Removed radiological signs (rs) related tests

[tests] Revamp tests for montgomery, shenzhen, indian, and tbx11k; Erase tests for outdated RS modules

Some tests have been updated, while other which are still a work in
progress have been marked with @pytest.mark.skip(reason="Test need to be updated")

[data.augmentations] Move transforms to augmentations; Implement auto-parellisation for ElasticDeformation (partial affects #5); Reflect changes in all relevant submodules

Maxime DELITROZ authored 1 year ago and André Anjos committed 1 year ago

We decided to handle the resizing of the input at the model level and not at the dataset level anymore. Loaders, docstrings and tests of Shenzhen and Montgomery were updated accordingly to only load data, remove black borders and crop to square shape. [image_utils.RemoveBlackBorders] had to be modified to allow functional utilization

[data.transforms] Properly implement ElasticDeformation so it works with images or batches; Update test case for transforms; Create new test case for image_utils; Update models to reflect changes (partially addresses #5)