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medai
software
mednet
Commits
1a6f015c
Commit
1a6f015c
authored
1 year ago
by
André Anjos
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[tests.test_image_utils] Update to support new structure
parent
2491690c
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1 merge request
!6
Making use of LightningDataModule and simplification of data loading
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tests/test_image_utils.py
+12
-23
12 additions, 23 deletions
tests/test_image_utils.py
with
12 additions
and
23 deletions
tests/test_image_utils.py
+
12
−
23
View file @
1a6f015c
...
...
@@ -6,7 +6,7 @@
import
numpy
import
PIL.Image
from
ptbench.data.image_utils
import
R
emove
B
lack
B
orders
from
ptbench.data.image_utils
import
r
emove
_b
lack
_b
orders
def
test_remove_black_borders
(
datadir
):
...
...
@@ -15,8 +15,7 @@ def test_remove_black_borders(datadir):
raw_with_black_border
=
PIL
.
Image
.
open
(
data_file
)
# Remove the black border
rbb
=
RemoveBlackBorders
()
raw_rbb_removed
=
rbb
(
raw_with_black_border
)
raw_rbb_removed
=
remove_black_borders
(
raw_with_black_border
)
# Get the same sample without black border
data_file_2
=
str
(
datadir
/
"
raw_without_black_border.png
"
)
...
...
@@ -29,23 +28,13 @@ def test_remove_black_borders(datadir):
numpy
.
testing
.
assert_array_equal
(
raw_without_black_border
,
raw_rbb_removed
)
# def test_load_pil_16bit(datadir):
# # If the ratio is higher 0.5, image is probably clipped
# Level16to8 = SingleAutoLevel16to8()
#
# data_file = str(datadir / "16bits.png")
# image = numpy.array(Level16to8(load_pil(data_file)))
#
# count_pixels = numpy.count_nonzero(image)
# count_max_value = numpy.count_nonzero(image == image.max())
#
# assert count_max_value / count_pixels < 0.5
#
# # It should not do anything to an image already in 8 bits
# data_file = str(datadir / "raw_without_black_border.png")
# img_loaded = load_pil(data_file)
#
# original_8bits = numpy.array(img_loaded)
# leveled_8bits = numpy.array(Level16to8(img_loaded))
#
# numpy.testing.assert_array_equal(original_8bits, leveled_8bits)
def
test_load_pil_16bit
(
datadir
):
# If the ratio is higher 0.5, image is probably clipped
image
=
PIL
.
Image
.
open
(
datadir
/
"
16bits.png
"
)
array
=
numpy
.
array
(
image
).
astype
(
numpy
.
float32
)
/
65535
count_pixels
=
numpy
.
count_nonzero
(
array
)
count_max_value
=
numpy
.
count_nonzero
(
array
==
array
.
max
())
assert
count_max_value
/
count_pixels
<
0.5
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