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medai
software
mednet
Commits
751a38bc
Commit
751a38bc
authored
1 year ago
by
Daniel CARRON
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[test] Ignore edge values when comparing histograms
parent
3a3775e7
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3 merge requests
!19
Fix Issues when running tests on the CI
,
!18
Update tests
,
!16
Make square centre-padding a model transform
Pipeline
#84248
failed
1 year ago
Stage: qa
Stage: test
Stage: doc
Stage: dist
Changes
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2 changed files
src/mednet/models/pasa.py
+5
-1
5 additions, 1 deletion
src/mednet/models/pasa.py
tests/conftest.py
+13
-2
13 additions, 2 deletions
tests/conftest.py
with
18 additions
and
3 deletions
src/mednet/models/pasa.py
+
5
−
1
View file @
751a38bc
...
...
@@ -75,7 +75,11 @@ class Pasa(pl.LightningModule):
self
.
model_transforms
=
[
Grayscale
(),
SquareCenterPad
(),
torchvision
.
transforms
.
Resize
(
512
,
antialias
=
True
),
torchvision
.
transforms
.
Resize
(
512
,
antialias
=
True
,
interpolation
=
torchvision
.
transforms
.
InterpolationMode
.
BILINEAR
,
),
]
self
.
_train_loss
=
train_loss
...
...
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tests/conftest.py
+
13
−
2
View file @
751a38bc
...
...
@@ -203,7 +203,9 @@ class DatabaseCheckers:
# __import__("pdb").set_trace()
@staticmethod
def
check_image_quality
(
datamodule
,
reference_histogram_file
):
def
check_image_quality
(
datamodule
,
reference_histogram_file
,
histogram_edges_threshold
=
2
):
ref_histogram_splits
=
JSONDatabaseSplit
(
reference_histogram_file
)
for
split_name
in
ref_histogram_splits
:
...
...
@@ -227,7 +229,16 @@ class DatabaseCheckers:
img
=
to_pil_image
(
image_tensor
)
histogram
=
img
.
histogram
()
assert
histogram
==
ref_hist_data
# The histograms do not exacly match due to the torch resize transform
# acting differently depending on the environment.
assert
(
histogram
[
histogram_edges_threshold
:
-
histogram_edges_threshold
]
==
ref_hist_data
[
histogram_edges_threshold
:
-
histogram_edges_threshold
]
)
@pytest.fixture
...
...
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