Many changes

• Removing legacy code
• Port to the new ci
• Estimate the size of the tfrecords file that will be created
• bug-fixes
• Add a new architecture for patch-based CNN
• Refactored the scripts to use the new click tools
• Changed the compute_statistics script completely
• Removed the unused predict_generic script
• Removed the unused train script and renamed train_generic to train

Fixes #50 (closed) #52 (closed) #48 (closed)

bob/learn/tensorflow/network/PatchCNN.py

+"""Path-based CNN Estimator for "Face Anti-spoofing Using Patch and Depth-based
+CNNs".
+
+The architecture is:
+
++--------------+---------------+---------------+
+| Layer        | Filter/Stride | Output Size   |
++--------------+---------------+---------------+
+| Conv-1       | 5 x 5/1       | 96 x 96 x 50  |
+| BN-1         |               | 96 x 96 x 50  |
+| MaxPooling-1 | 2 x 2/2       | 48 x 48 x 50  |
++--------------+---------------+---------------+
+| Conv-2       | 3 x 3/1       | 48 x 48 x 100 |
+| BN-2         |               | 48 x 48 x 100 |
+| MaxPooling-2 | 2 x 2/2       | 24 x 24 x 100 |
++--------------+---------------+---------------+
+| Conv-3       | 3 x 3/1       | 24 x 24 x 150 |
+| BN-3         |               | 24 x 24 x 150 |
+| MaxPooling-3 | 3 x 3/2       | 12 x 12 x 150 |
++--------------+---------------+---------------+
+| Conv-4       | 3 x 3/1       | 12 x 12 x 200 |
+| BN-4         |               | 12 x 12 x 200 |
+| MaxPooling-4 | 2 x 2/2       | 6 x 6 x 200   |
++--------------+---------------+---------------+
+| Conv-5       | 3 x 3/1       | 6 x 6 x 250   |
+| BN-5         |               | 6 x 6 x 250   |
+| MaxPooling-5 | 2 x 2/2       | 3 x 3 x 250   |
++--------------+---------------+---------------+
+| FC-1         | 3 x 3/1       | 1 x 1 x 1000  |
+| BN-6         |               | 1 x 1 x 1000  |
+| Dropout      | 0.5           | 1 x 1 x 1000  |
++--------------+---------------+---------------+
+| FC-2         | 1 x 1/1       | 1 x 1 x 400   |
+| BN-7         |               | 1 x 1 x 400   |
+| FC-3         | 1 x 1/1       | 1 x 1 x 2     |
++--------------+---------------+---------------+
+
+"""
+
+from __future__ import absolute_import
+from __future__ import division
+from __future__ import print_function
+
+import tensorflow as tf
+
+
+def base_architecture(input_layer, mode, data_format, **kwargs):
+    # Keep track of all the endpoints
+    endpoints = {}
+    bn_axis = 1 if data_format.lower() == 'channels_first' else -1
+    training = mode == tf.estimator.ModeKeys.TRAIN
+
+    # ======================
+    # Convolutional Layer #1
+    conv1 = tf.layers.conv2d(
+        inputs=input_layer,
+        filters=50,
+        kernel_size=(5, 5),
+        padding="same",
+        activation=tf.nn.relu,
+        data_format=data_format)
+    endpoints['Conv-1'] = conv1
+
+    # Batch Normalization #1
+    bn1 = tf.layers.batch_normalization(conv1, axis=bn_axis, training=training)
+    endpoints['BN-1'] = bn1
+
+    # Pooling Layer #1
+    pool1 = tf.layers.max_pooling2d(
+        inputs=bn1, pool_size=[2, 2], strides=2, data_format=data_format)
+    endpoints['MaxPooling-1'] = pool1
+
+    # ======================
+    # Convolutional Layer #2
+    conv2 = tf.layers.conv2d(
+        inputs=pool1,
+        filters=100,
+        kernel_size=(3, 3),
+        padding="same",
+        activation=tf.nn.relu,
+        data_format=data_format)
+    endpoints['Conv-2'] = conv2
+
+    # Batch Normalization #2
+    bn2 = tf.layers.batch_normalization(conv2, axis=bn_axis, training=training)
+    endpoints['BN-2'] = bn2
+
+    # Pooling Layer #2
+    pool2 = tf.layers.max_pooling2d(
+        inputs=bn2, pool_size=[2, 2], strides=2, data_format=data_format)
+    endpoints['MaxPooling-2'] = pool2
+
+    # ======================
+    # Convolutional Layer #3
+    conv3 = tf.layers.conv2d(
+        inputs=pool2,
+        filters=150,
+        kernel_size=(3, 3),
+        padding="same",
+        activation=tf.nn.relu,
+        data_format=data_format)
+    endpoints['Conv-3'] = conv3
+
+    # Batch Normalization #3
+    bn3 = tf.layers.batch_normalization(conv3, axis=bn_axis, training=training)
+    endpoints['BN-3'] = bn3
+
+    # Pooling Layer #3
+    pool3 = tf.layers.max_pooling2d(
+        inputs=bn3, pool_size=[3, 3], strides=2, data_format=data_format)
+    endpoints['MaxPooling-3'] = pool3
+
+    # ======================
+    # Convolutional Layer #4
+    conv4 = tf.layers.conv2d(
+        inputs=pool3,
+        filters=200,
+        kernel_size=(3, 3),
+        padding="same",
+        activation=tf.nn.relu,
+        data_format=data_format)
+    endpoints['Conv-4'] = conv4
+
+    # Batch Normalization #4
+    bn4 = tf.layers.batch_normalization(conv4, axis=bn_axis, training=training)
+    endpoints['BN-4'] = bn4
+
+    # Pooling Layer #4
+    pool4 = tf.layers.max_pooling2d(
+        inputs=bn4, pool_size=[2, 2], strides=2, data_format=data_format)
+    endpoints['MaxPooling-4'] = pool4
+
+    # ======================
+    # Convolutional Layer #5
+    conv5 = tf.layers.conv2d(
+        inputs=pool4,
+        filters=250,
+        kernel_size=(3, 3),
+        padding="same",
+        activation=tf.nn.relu,
+        data_format=data_format)
+    endpoints['Conv-5'] = conv5
+
+    # Batch Normalization #5
+    bn5 = tf.layers.batch_normalization(conv5, axis=bn_axis, training=training)
+    endpoints['BN-5'] = bn5
+
+    # Pooling Layer #5
+    pool5 = tf.layers.max_pooling2d(
+        inputs=bn5, pool_size=[2, 2], strides=2, data_format=data_format)
+    endpoints['MaxPooling-5'] = pool5
+
+    # Flatten tensor into a batch of vectors
+    pool5_flat = tf.layers.flatten(pool5)
+    endpoints['MaxPooling-5-Flat'] = pool5_flat
+
+    # ========================
+    # Fully Connected Layer #1
+    fc_1 = tf.layers.dense(
+        inputs=pool5_flat, units=1000, activation=tf.nn.relu)
+    endpoints['FC-1'] = fc_1
+
+    # Batch Normalization #6
+    bn6 = tf.layers.batch_normalization(fc_1, axis=bn_axis, training=training)
+    endpoints['BN-6'] = bn6
+
+    # Dropout
+    dropout = tf.layers.dropout(inputs=bn6, rate=0.5, training=training)
+    endpoints['dropout'] = dropout
+
+    # ========================
+    # Fully Connected Layer #2
+    fc_2 = tf.layers.dense(inputs=dropout, units=400, activation=tf.nn.relu)
+    endpoints['FC-2'] = fc_2
+
+    # Batch Normalization #7
+    bn7 = tf.layers.batch_normalization(fc_2, axis=bn_axis, training=training)
+    endpoints['BN-7'] = bn7
+
+    return bn7, endpoints
+
+
+def architecture(input_layer,
+                 mode=tf.estimator.ModeKeys.TRAIN,
+                 n_classes=2,
+                 data_format='channels_last',
+                 reuse=False,
+                 **kwargs):
+
+    with tf.variable_scope('PatchCNN', reuse=reuse):
+
+        bn7, endpoints = base_architecture(input_layer, mode, data_format)
+        # Logits layer
+        logits = tf.layers.dense(inputs=bn7, units=n_classes)
+        endpoints['FC-3'] = logits
+        endpoints['logits'] = logits
+
+    return logits, endpoints
+
+
+def model_fn(features, labels, mode, params=None, config=None):
+    """Model function for CNN."""
+    data = features['data']
+    key = features['key']
+
+    params = params or {}
+    learning_rate = params.get('learning_rate', 1e-3)
+
+    arch_kwargs = {
+        'n_classes': params.get('n_classes', None),
+        'data_format': params.get('data_format', None),
+    }
+    arch_kwargs = {k: v for k, v in arch_kwargs.items() if v is not None}
+
+    logits, _ = architecture(data, mode, **arch_kwargs)
+
+    predictions = {
+        # Generate predictions (for PREDICT and EVAL mode)
+        "classes": tf.argmax(input=logits, axis=1),
+        # Add `softmax_tensor` to the graph. It is used for PREDICT and by the
+        # `logging_hook`.
+        "probabilities": tf.nn.softmax(logits, name="softmax_tensor"),
+        'key': key,
+    }
+    if mode == tf.estimator.ModeKeys.PREDICT:
+        return tf.estimator.EstimatorSpec(mode=mode, predictions=predictions)
+
+    # Calculate Loss (for both TRAIN and EVAL modes)
+    loss = tf.losses.sparse_softmax_cross_entropy(logits=logits, labels=labels)
+    accuracy = tf.metrics.accuracy(
+        labels=labels, predictions=predictions["classes"])
+    metrics = {'accuracy': accuracy}
+
+    # Configure the training op
+    if mode == tf.estimator.ModeKeys.TRAIN:
+        optimizer = tf.train.GradientDescentOptimizer(
+            learning_rate=learning_rate)
+        train_op = optimizer.minimize(
+            loss=loss, global_step=tf.train.get_or_create_global_step())
+        # Log accuracy and loss
+        with tf.name_scope('train_metrics'):
+            tf.summary.scalar('accuracy', accuracy[1])
+            tf.summary.scalar('loss', loss)
+    else:
+        train_op = None
+
+    return tf.estimator.EstimatorSpec(
+        mode=mode,
+        predictions=predictions,
+        loss=loss,
+        train_op=train_op,
+        eval_metric_ops=metrics)