Commits · f09d3fe8a7f979ac1ba9cf23b0336d483ba29889 · medai / software / mednet · GitLab

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Jul 01, 2024
- [various] Remove retrieval of "mednet" logger in favour of the modules · f09d3fe8
  André Anjos authored 8 months ago
  
  f09d3fe8
- [various] Fix multiple import errors after rebase · 1c1a1a56
  André Anjos authored 8 months ago
  
  1c1a1a56
- [pyproject] Reset correct module path for visceral · c8c63bcc
  André Anjos authored 8 months ago
  
  c8c63bcc
- [doc] Fix doc building · dc6e0037
  André Anjos authored 8 months ago
  
  dc6e0037
- [libs.classification.config.models.cnn3d] Fix qa · 40d90c86
  André Anjos authored 8 months ago
  
  40d90c86
- [3d-cnn/visceral] Adequate database and model to new-style datamodule/model · 9726f356
  André Anjos authored 8 months ago
  
  9726f356
- [upload] Move common upload code to common lib · 740c3278
  Daniel CARRON authored 8 months ago
  
  740c3278
- [tests.segmentation] Add tests for view script · 3797df82
  Daniel CARRON authored 8 months ago and André Anjos committed 8 months ago
  
  3797df82
- [segmentation/engine/adabound] Fix typing · 228a38ec
  Daniel CARRON authored 8 months ago and André Anjos committed 8 months ago
  
  228a38ec
- [helpers/extract_hdf5_images] Update hdf5 dataset keys · 610850a2
  Daniel CARRON authored 8 months ago and André Anjos committed 8 months ago
  
  610850a2
- [segmentation] Apply augmentation transforms · d75f924d
  Daniel CARRON authored 8 months ago and André Anjos committed 8 months ago
  
  d75f924d
- [segmentation.scripts] Add upload script · e4a0b7e2
  Daniel CARRON authored 8 months ago and André Anjos committed 8 months ago
  
  e4a0b7e2
- [segmentation.data.typing] Define sample data as a TypedDict · 50bff62a
  Daniel CARRON authored 8 months ago and André Anjos committed 8 months ago
  
  50bff62a
- [common.engine.callbacks] Get lr from optimizer if no scheduler defined · e0f87834
  Daniel CARRON authored 8 months ago and André Anjos committed 8 months ago
  
  e0f87834
- [models] Add support for learning rate schedulers · 993945b7
  Daniel CARRON authored 8 months ago and André Anjos committed 8 months ago
  
  993945b7
- [segmentation.engine.dumper] Fix sample indexing · a3cc8884
  Daniel CARRON authored 8 months ago and André Anjos committed 8 months ago
  
  a3cc8884
- [models] Move repeated functions into specialized models · 38d54072
  Daniel CARRON authored 8 months ago and André Anjos committed 8 months ago
  
  38d54072
- [doc] Add new models to doc · d3511abe
  Daniel CARRON authored 8 months ago and André Anjos committed 8 months ago
  
  d3511abe
- [models] Create specialized model per library · 5ccbe6d6
  Daniel CARRON authored 8 months ago and André Anjos committed 8 months ago
  
  5ccbe6d6
- [normalizer] Do not call to super().set_normalizer() as it was moved · 145e8f74
  Daniel CARRON authored 8 months ago and André Anjos committed 8 months ago
  
  145e8f74
- [typing] Redefine Sample type in each lib · eb4848f6
  Daniel CARRON authored 8 months ago and André Anjos committed 8 months ago
  
  eb4848f6
- [datamodule] More generic sample size computation · a16730af
  Daniel CARRON authored 8 months ago and André Anjos committed 8 months ago
  
  a16730af
- [doc] Update doc · 6f2b1a75
  Daniel CARRON authored 8 months ago and André Anjos committed 8 months ago
  
  6f2b1a75
- [tests] Update tests · b42c68f9
  Daniel CARRON authored 8 months ago and André Anjos committed 8 months ago
  
  b42c68f9
- [common.database] Hotfix for database check command · bdd78673
  Daniel CARRON authored 8 months ago and André Anjos committed 8 months ago
  
  bdd78673
- [segmentation.predict] Make prediction work with new samples · 7e66943c
  Daniel CARRON authored 8 months ago and André Anjos committed 8 months ago
  
  7e66943c
- [common] Hotfixes to make code work with both types of samples · 411a9285
  Daniel CARRON authored 8 months ago and André Anjos committed 8 months ago
  
  411a9285
- [segmentation.models] Update models to handle updated samples · a12a332a
  Daniel CARRON authored 8 months ago and André Anjos committed 8 months ago
  
  a12a332a
- [segmentation.datamodule] Make sample() return two dicts · f142d968
  Daniel CARRON authored 8 months ago and André Anjos committed 8 months ago
  
  f142d968
- [normalizer] Move normalizer out of common package and inside libs · da13b5b0
  Daniel CARRON authored 8 months ago and André Anjos committed 8 months ago
  
  da13b5b0
- [libs.segmentation.scripts.evaluate] Implement 2nd. annotator analysis · 2bc38491
  André Anjos authored 8 months ago
  
  2bc38491
- [libs.segmentation.engine.evaluator] Fix doc strings · 1c1600a8
  André Anjos authored 8 months ago
  
  1c1600a8
- [libs.segmentation.scripts.evaluate] Major clean-up · 40aa5aba
  André Anjos authored 8 months ago
  
  40aa5aba
- [libs.segmentation.scripts.evaluate] Fix unreachable code · 4eb47d19
  André Anjos authored 8 months ago
  
  4eb47d19
- [libs.common.scripts.utils] Fix typing · aa2abdaf
  André Anjos authored 8 months ago
  
  aa2abdaf
- [various] Simplify testing, metadata saving, json data saving · 01daf20f
  André Anjos authored 8 months ago
  
  01daf20f
- [tests.classification] Streamline testing · 946e86f5
  André Anjos authored 8 months ago
  
  946e86f5
- [tests] Separate test output folders · bd4d1f75
  André Anjos authored 8 months ago
  
  bd4d1f75
- [libs.common.scripts.utils] Give more options to fix version warning · c2483554
  André Anjos authored 8 months ago
  
  c2483554
- [doc] Remove pandas dep · 62367dc4
  André Anjos authored 8 months ago
  
  62367dc4