Commits · 8e5b1d7cbd79148b7bfe10d4128393fba7b9a42d · medai / software / mednet · GitLab

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Jan 19, 2024
- [doc] Comment out unused reference · 8e5b1d7c
  Daniel CARRON authored 1 year ago
  
  8e5b1d7c
- [doc] Documentation fixes · e337e8d6
  Daniel CARRON authored 1 year ago
  
  e337e8d6
- Do not use lightning 2.1.3 · 6a1b4d66
  Daniel CARRON authored 1 year ago
  
  Lightning 2.1.3 changes how checkpoints are saved, which breaks how we handle saving and loading. This should be reverted in the next release of lightning.
  6a1b4d66
- [tests] Fix saliency tests · f0facb1c
  Daniel CARRON authored 1 year ago
  
  f0facb1c
- Moved computation of binary mask to its own function · ae439031
  Daniel CARRON authored 1 year ago
  
  ae439031
- [engine.saliency.viewer] Fix use of heatmap from matplotlib · f01f65e4
  André Anjos authored 1 year ago and Daniel CARRON committed 1 year ago
  
  f01f65e4
- [tests.test_transforms] Rename to fix typo · cef1ef38
  André Anjos authored 1 year ago and Daniel CARRON committed 1 year ago
  
  cef1ef38
- [engine.saliency.evaluator] Fix evaluation strategy after interpretability module simplifications · fc492424
  André Anjos authored 1 year ago and Daniel CARRON committed 1 year ago
  
  fc492424
- [pyproject,conda] Add scikit-image dependence · 6fd482d0
  André Anjos authored 1 year ago and Daniel CARRON committed 1 year ago
  
  6fd482d0
- [scripts] Streamline saliency map generation and analysis · 5a314b5c
  André Anjos authored 1 year ago and Daniel CARRON committed 1 year ago
  
  5a314b5c
- [scripts.saliency] Re-structure CLI to make it more consistent with submodule organisation · 1b311779
  André Anjos authored 1 year ago and Daniel CARRON committed 1 year ago
  
  1b311779
- [scripts.view_saliency] New viewer implementation based on pillow and matplotlib instead of opencv · 910e58c1
  André Anjos authored 1 year ago and Daniel CARRON committed 1 year ago
  
  910e58c1
- [scripts.saliency_interpretability] Allow user to explicitly define target to be analysed · 953abf62
  André Anjos authored 1 year ago and Daniel CARRON committed 1 year ago
  
  953abf62
- [engine.saliency.interpretability] Allow user to explicitly define target to be analysed · be4a633c
  André Anjos authored 1 year ago and Daniel CARRON committed 1 year ago
  
  be4a633c
- [various] Remove outdated files · a7d4c64f
  André Anjos authored 1 year ago and Daniel CARRON committed 1 year ago
  
  a7d4c64f
- [scripts.saliency_completeness] Improve cli docs · 37359be3
  André Anjos authored 1 year ago and Daniel CARRON committed 1 year ago
  
  37359be3
- [scripts.generate_saliencymaps] Improve cli docs · 4fdb89b9
  André Anjos authored 1 year ago and Daniel CARRON committed 1 year ago
  
  4fdb89b9
- [engine.callbacks] Refactor callbacks to delegate most work to lightning · 73f436fd
  André Anjos authored 1 year ago and Daniel CARRON committed 1 year ago
  
  73f436fd
- [pyproject,conda] Remove dependencies to opencv and pandas · 50bc1099
  André Anjos authored 1 year ago and Daniel CARRON committed 1 year ago
  
  50bc1099
- [data.augmentations] Temporarily disables within-batch parallelisation of... · 01e16fd7
  André Anjos authored 1 year ago and Daniel CARRON committed 1 year ago
  
  [data.augmentations] Temporarily disables within-batch parallelisation of elastic deformation (mitigates #53)
  01e16fd7
- [utils.checkpointer] Refactor checkpoint saving and loading · 0152c9c3
  André Anjos authored 1 year ago and Daniel CARRON committed 1 year ago
  
  0152c9c3
- [pyproject] Relax constraints back again; Closes #31 · 6c09539b
  André Anjos authored 1 year ago and Daniel CARRON committed 1 year ago
  
  6c09539b
- [tests.test_tbx11k] Fix test after bounding-box type fix · a3febdc4
  André Anjos authored 1 year ago and Daniel CARRON committed 1 year ago
  
  a3febdc4
- [config.data.tbx11k.datamodule] Re-define bounding-box containers for better pytorch integration · f0e1e38e
  André Anjos authored 1 year ago and Daniel CARRON committed 1 year ago
  
  f0e1e38e
- [conda,python] Pin lightning to <2.1.0 · d2e47941
  André Anjos authored 1 year ago and Daniel CARRON committed 1 year ago
  
  d2e47941
- [scripts] Fix usage docs · 7e839421
  André Anjos authored 1 year ago and Daniel CARRON committed 1 year ago
  
  7e839421
- [scripts.generate_saliencymaps] Fix usage docs · 2bc23b8a
  André Anjos authored 1 year ago and Daniel CARRON committed 1 year ago
  
  2bc23b8a
- [config.data.nih_cxr14.datamodule] Fix loading of RGBA-encoded images (closes #51 ) · 452a7b4d
  André Anjos authored 1 year ago and Daniel CARRON committed 1 year ago
  
  452a7b4d
- [doc] Update installation instructions to include (mamba) pytorch-gpu installation tips · 85e82c3d
  André Anjos authored 1 year ago and Daniel CARRON committed 1 year ago
  
  85e82c3d
- [scripts.evaluate_saliencymaps] Add script and functionality · 5ce011d2
  André Anjos authored 1 year ago and Daniel CARRON committed 1 year ago
  
  5ce011d2
- Documentation fixes · 71536f42
  André Anjos authored 1 year ago and Daniel CARRON committed 1 year ago
  
  71536f42
- [scripts.train] Improve documentation · c7958fc3
  André Anjos authored 1 year ago and Daniel CARRON committed 1 year ago
  
  c7958fc3
- [engine.saliency.completeness] Implement multiprocessing · 09466bb7
  André Anjos authored 1 year ago and Daniel CARRON committed 1 year ago
  
  09466bb7
- [engine.saliency] Fix imports · fee2f98f
  André Anjos authored 1 year ago and Daniel CARRON committed 1 year ago
  
  fee2f98f
- Rename and relocate scripts into modules · f0eaa87f
  André Anjos authored 1 year ago and Daniel CARRON committed 1 year ago
  
  f0eaa87f
- [engine/saliencymap_generator] Improve comments on code · f401ef87
  André Anjos authored 1 year ago and Daniel CARRON committed 1 year ago
  
  f401ef87
- [saliencymap_evaluator] Improve TODO comments with more ideas · 4d6e9c13
  André Anjos authored 1 year ago and Daniel CARRON committed 1 year ago
  
  4d6e9c13
- [saliencymap_evaluator] Reimplements interpretability evaluator to simplify... · 982404c9
  André Anjos authored 1 year ago and Daniel CARRON committed 1 year ago
  
  [saliencymap_evaluator] Reimplements interpretability evaluator to simplify code, be less dependent on opencv, improve documentation, and improve type hinting
  982404c9
- [saliencymap_generator] Save maps directly · 2e149443
  André Anjos authored 1 year ago and Daniel CARRON committed 1 year ago
  
  2e149443
- [ignore] Add results/ directory · 40b88518
  André Anjos authored 1 year ago and Daniel CARRON committed 1 year ago
  
  40b88518