Commits · 661ad2bdf0207977809fc62f941dd52b708f748b · medai / software / mednet

Oct 17, 2024
- [pixi] Update lockfile · 661ad2bd
  André Anjos authored 4 months ago
  
  661ad2bd
Oct 03, 2024
- [doc] Use bibtex database to manage references · b7edfba4
  André Anjos authored 5 months ago
  
  b7edfba4
Oct 02, 2024
- [pyproject] Relax numpy/pytorch constraints · e0ab5b3d
  André Anjos authored 5 months ago
  
  e0ab5b3d
Sep 30, 2024
- [pyproject] Add color logging; Provide version command · 74b5c670
  André Anjos authored 5 months ago
  
  74b5c670
Sep 28, 2024
- [pyproject] Pin clapper; Remove pixi system-requirements (default is fine) · 3436028f
  André Anjos authored 5 months ago
  
  3436028f
Sep 21, 2024
- [detect] Implement prediction, evaluation and minimal testing · 64f3a314
  André Anjos authored 5 months ago
  
  64f3a314
Sep 11, 2024
- [pixi] Minor env update · 8d7b62b0
  André Anjos authored 6 months ago
  
  8d7b62b0
Sep 09, 2024
- [pixi] Avoid main package on build/qa environments · 23c57ec9
  André Anjos authored 6 months ago
  
  23c57ec9
Sep 01, 2024

[pyproject] Downgrade pytorch to avoid... · 67fba479

André Anjos authored 6 months ago

[pyproject] Downgrade pytorch to avoid https://github.com/conda-forge/pytorch-cpu-feedstock/issues/254

67fba479

Aug 30, 2024
- Support for multi-label classification · a97238c3
  André Anjos authored 6 months ago
  
  a97238c3
Aug 23, 2024
- [pyproject] Relax constraints to the maximum · 8f3eea16
  André Anjos authored 6 months ago
  
  8f3eea16
Aug 22, 2024
- [models.transforms] Use RGB transform from torchvision 0.18.1 (closes #91 ) · 1648bf0f
  André Anjos authored 6 months ago
  
  1648bf0f
- [pyproject] Re-add pip as a cuda env dependency for docker installation · ff3d1571
  André Anjos authored 6 months ago
  
  ff3d1571
- [pyproject] Move away from pytorch/nvidia channels, use conda-forge exclusively (closes #88 ) · 128edce4
  André Anjos authored 6 months ago
  
  128edce4
Aug 21, 2024
- [pixi] Update lockfile · 58853822
  André Anjos authored 6 months ago
  
  58853822
Aug 20, 2024
- Revamp documentation · 92aa6689
  André Anjos authored 6 months ago
  
  92aa6689
Aug 06, 2024
- [pixi] Upgrade lightning to 2.3.3 · 06136029
  André Anjos authored 7 months ago
  
  06136029
- [pixi] Re-downgrade numpy to <2 · 560996b4
  André Anjos authored 7 months ago
  
  560996b4
- [pixi] Update package environment (includes numpy>=2) · d4947079
  André Anjos authored 7 months ago
  
  d4947079
Jul 01, 2024
- [various] Fix multiple import errors after rebase · 1c1a1a56
  André Anjos authored 8 months ago
  
  1c1a1a56
- [pyproject] Remove pandas dependency · afaf0cfe
  André Anjos authored 8 months ago
  
  afaf0cfe
- [segmentation-evaluation] Functional evaluation code · b53404c5
  Daniel CARRON authored 9 months ago and André Anjos committed 8 months ago
  
  Some features have been commented out to have some basic code working, notably support for multiple annotators. This current code *runs* but results need to be checked and refactoring/cleanup is necessary.
  b53404c5
Jun 28, 2024
- [pyproject] define 3d models, visceral datamodule and add torchio · 02a82603
  Yvan PANNATIER authored 8 months ago
  
  02a82603
Jun 13, 2024
- [pyproject] Fix conda-pypi mapping for pytorch/torchvision (required since pixi-0.24.* · 1557cfa6
  André Anjos authored 9 months ago
  
  View commits for tag v1.0.0b0 v1.0.0b0
  
  1557cfa6
Jun 07, 2024
- [pyproject] Update dependencies and lock file · 995bd119
  André Anjos authored 9 months ago
  
  995bd119
May 28, 2024
- [pyproject] Fixes unresolvable cuda environment making nvidia channel more prioritary · e3e4de0e
  André Anjos authored 9 months ago
  
  e3e4de0e
May 07, 2024
- [pixi] Update lockfile · 97b746bd
  André Anjos authored 10 months ago
  
  97b746bd
May 03, 2024
- [pyproject] Depend on matplotlib-base for conda packages · aaa4d443
  André Anjos authored 10 months ago
  
  aaa4d443
May 02, 2024
- [pixi] Update lockfile · bb30bf45
  André Anjos authored 10 months ago
  
  bb30bf45
- [pyproject] Do not install cuda runtime (expect it on the host machine) · 4d523d36
  André Anjos authored 10 months ago
  
  4d523d36
- [pixi] Simplify cuda setup for users · a20007d8
  André Anjos authored 10 months ago
  
  a20007d8
May 01, 2024
- [pixi] Update lockfile with latest changes on environments · d4f63f9e
  André Anjos authored 10 months ago
  
  d4f63f9e
- [pyproject] Allow CUDA environments to be production-only · dc179852
  André Anjos authored 10 months ago
  
  dc179852
- [pyproject] CUDA system-requirements should only appear at the cuda feature · 98d80a6e
  André Anjos authored 10 months ago
  
  98d80a6e
- [pyproject] Support CUDA from root manifest · 2c68638c
  André Anjos authored 10 months ago
  
  2c68638c
Apr 29, 2024
- [pixi] Update lockfile with latest changes on environments · a591d115
  André Anjos authored 10 months ago
  
  a591d115
- [pixi] Update lockfile · 7dfabd30
  André Anjos authored 10 months ago
  
  7dfabd30
Apr 22, 2024
- [pixi] Use pytorch/torchvision from pytorch channel · ed3ebc95
  André Anjos authored 10 months ago
  
  ed3ebc95
- [ci] Create dedicated phase for uv pip check · 3c8def1c
  André Anjos authored 10 months ago
  
  3c8def1c
- [doc] Update installation instructions; Move CUDA-install manifest to separate... · 936d9df4
  André Anjos authored 10 months ago
  
  [doc] Update installation instructions; Move CUDA-install manifest to separate directory; Test pip installability with uv
  936d9df4