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Commit d4b5e323 authored by André Anjos's avatar André Anjos :speech_balloon:
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[data.montgomery] Update documentation reflect more truthful information about dataset

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1 merge request!6Making use of LightningDataModule and simplification of data loading
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src/ptbench/data/montgomery/default.py
+ 4
− 4
View file @ d4b5e323
......@@ -10,11 +10,11 @@ This configuration:
* Raw data input (on disk):
* PNG images 12 bit grayscale
* PNG images 8 bit grayscale
* resolution: 4020 x 4892 px or 4892 x 4020 px
* Output image:
* Transforms:
* Load raw PNG with :py:mod:`PIL`
......@@ -25,11 +25,11 @@ This configuration:
* Final specifications
* Fixed resolution: 512 x 512 px
* Color RGB encoding
* Grayscale (single channel), 8 bits
Protocol ``default``:
* Training samples: first 64% of TB and healthy CXR (including labels)
* Validation samples: 16% of TB and healthy CXR (including labels)
* Test samples: 20% of TB and healty CXR (including labels)
......
src/ptbench/data/montgomery/fold_0.py
+ 3
− 4
View file @ d4b5e323
......@@ -10,11 +10,11 @@ This configuration:
* Raw data input (on disk):
* PNG images 12 bit grayscale
* PNG images 8 bit grayscale
* resolution: 4020 x 4892 px or 4892 x 4020 px
* Output image:
* Transforms:
* Load raw PNG with :py:mod:`PIL`
......@@ -25,7 +25,7 @@ This configuration:
* Final specifications
* Fixed resolution: 512 x 512 px
* Color RGB encoding
* Grayscale (single channel), 8 bits
"""
import importlib.resources
......@@ -42,4 +42,3 @@ datamodule = CachingDataModule(
),
raw_data_loader=RawDataLoader(),
)
src/ptbench/data/montgomery/fold_1.py
+ 3
− 4
View file @ d4b5e323
......@@ -10,11 +10,11 @@ This configuration:
* Raw data input (on disk):
* PNG images 12 bit grayscale
* PNG images 8 bit grayscale
* resolution: 4020 x 4892 px or 4892 x 4020 px
* Output image:
* Transforms:
* Load raw PNG with :py:mod:`PIL`
......@@ -25,7 +25,7 @@ This configuration:
* Final specifications
* Fixed resolution: 512 x 512 px
* Color RGB encoding
* Grayscale (single channel), 8 bits
"""
import importlib.resources
......@@ -42,4 +42,3 @@ datamodule = CachingDataModule(
),
raw_data_loader=RawDataLoader(),
)
src/ptbench/data/montgomery/fold_2.py
+ 3
− 4
View file @ d4b5e323
......@@ -10,11 +10,11 @@ This configuration:
* Raw data input (on disk):
* PNG images 12 bit grayscale
* PNG images 8 bit grayscale
* resolution: 4020 x 4892 px or 4892 x 4020 px
* Output image:
* Transforms:
* Load raw PNG with :py:mod:`PIL`
......@@ -25,7 +25,7 @@ This configuration:
* Final specifications
* Fixed resolution: 512 x 512 px
* Color RGB encoding
* Grayscale (single channel), 8 bits
"""
import importlib.resources
......@@ -42,4 +42,3 @@ datamodule = CachingDataModule(
),
raw_data_loader=RawDataLoader(),
)
src/ptbench/data/montgomery/fold_3.py
+ 3
− 5
View file @ d4b5e323
......@@ -10,11 +10,11 @@ This configuration:
* Raw data input (on disk):
* PNG images 12 bit grayscale
* PNG images 8 bit grayscale
* resolution: 4020 x 4892 px or 4892 x 4020 px
* Output image:
* Transforms:
* Load raw PNG with :py:mod:`PIL`
......@@ -25,7 +25,7 @@ This configuration:
* Final specifications
* Fixed resolution: 512 x 512 px
* Color RGB encoding
* Grayscale (single channel), 8 bits
"""
import importlib.resources
......@@ -42,5 +42,3 @@ datamodule = CachingDataModule(
),
raw_data_loader=RawDataLoader(),
)
src/ptbench/data/montgomery/fold_4.py
+ 3
− 5
View file @ d4b5e323
......@@ -10,11 +10,11 @@ This configuration:
* Raw data input (on disk):
* PNG images 12 bit grayscale
* PNG images 8 bit grayscale
* resolution: 4020 x 4892 px or 4892 x 4020 px
* Output image:
* Transforms:
* Load raw PNG with :py:mod:`PIL`
......@@ -25,7 +25,7 @@ This configuration:
* Final specifications
* Fixed resolution: 512 x 512 px
* Color RGB encoding
* Grayscale (single channel), 8 bits
"""
import importlib.resources
......@@ -42,5 +42,3 @@ datamodule = CachingDataModule(
),
raw_data_loader=RawDataLoader(),
)
src/ptbench/data/montgomery/fold_5.py
+ 3
− 5
View file @ d4b5e323
......@@ -10,11 +10,11 @@ This configuration:
* Raw data input (on disk):
* PNG images 12 bit grayscale
* PNG images 8 bit grayscale
* resolution: 4020 x 4892 px or 4892 x 4020 px
* Output image:
* Transforms:
* Load raw PNG with :py:mod:`PIL`
......@@ -25,7 +25,7 @@ This configuration:
* Final specifications
* Fixed resolution: 512 x 512 px
* Color RGB encoding
* Grayscale (single channel), 8 bits
"""
import importlib.resources
......@@ -42,5 +42,3 @@ datamodule = CachingDataModule(
),
raw_data_loader=RawDataLoader(),
)
src/ptbench/data/montgomery/fold_6.py
+ 3
− 5
View file @ d4b5e323
......@@ -10,11 +10,11 @@ This configuration:
* Raw data input (on disk):
* PNG images 12 bit grayscale
* PNG images 8 bit grayscale
* resolution: 4020 x 4892 px or 4892 x 4020 px
* Output image:
* Transforms:
* Load raw PNG with :py:mod:`PIL`
......@@ -25,7 +25,7 @@ This configuration:
* Final specifications
* Fixed resolution: 512 x 512 px
* Color RGB encoding
* Grayscale (single channel), 8 bits
"""
import importlib.resources
......@@ -42,5 +42,3 @@ datamodule = CachingDataModule(
),
raw_data_loader=RawDataLoader(),
)
src/ptbench/data/montgomery/fold_7.py
+ 3
− 5
View file @ d4b5e323
......@@ -10,11 +10,11 @@ This configuration:
* Raw data input (on disk):
* PNG images 12 bit grayscale
* PNG images 8 bit grayscale
* resolution: 4020 x 4892 px or 4892 x 4020 px
* Output image:
* Transforms:
* Load raw PNG with :py:mod:`PIL`
......@@ -25,7 +25,7 @@ This configuration:
* Final specifications
* Fixed resolution: 512 x 512 px
* Color RGB encoding
* Grayscale (single channel), 8 bits
"""
import importlib.resources
......@@ -42,5 +42,3 @@ datamodule = CachingDataModule(
),
raw_data_loader=RawDataLoader(),
)
src/ptbench/data/montgomery/fold_8.py
+ 3
− 5
View file @ d4b5e323
......@@ -10,11 +10,11 @@ This configuration:
* Raw data input (on disk):
* PNG images 12 bit grayscale
* PNG images 8 bit grayscale
* resolution: 4020 x 4892 px or 4892 x 4020 px
* Output image:
* Transforms:
* Load raw PNG with :py:mod:`PIL`
......@@ -25,7 +25,7 @@ This configuration:
* Final specifications
* Fixed resolution: 512 x 512 px
* Color RGB encoding
* Grayscale (single channel), 8 bits
"""
import importlib.resources
......@@ -42,5 +42,3 @@ datamodule = CachingDataModule(
),
raw_data_loader=RawDataLoader(),
)
src/ptbench/data/montgomery/fold_9.py
+ 3
− 5
View file @ d4b5e323
......@@ -10,11 +10,11 @@ This configuration:
* Raw data input (on disk):
* PNG images 12 bit grayscale
* PNG images 8 bit grayscale
* resolution: 4020 x 4892 px or 4892 x 4020 px
* Output image:
* Transforms:
* Load raw PNG with :py:mod:`PIL`
......@@ -25,7 +25,7 @@ This configuration:
* Final specifications
* Fixed resolution: 512 x 512 px
* Color RGB encoding
* Grayscale (single channel), 8 bits
"""
import importlib.resources
......@@ -42,5 +42,3 @@ datamodule = CachingDataModule(
),
raw_data_loader=RawDataLoader(),
)
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