From d4b5e3230ffc63d0999fd2c055039009ffa1dffd Mon Sep 17 00:00:00 2001
From: Andre Anjos <andre.dos.anjos@gmail.com>
Date: Thu, 20 Jul 2023 16:00:43 +0200
Subject: [PATCH] [data.montgomery] Update documentation reflect more truthful
information about dataset
---
src/ptbench/data/montgomery/default.py | 8 ++++----
src/ptbench/data/montgomery/fold_0.py | 7 +++----
src/ptbench/data/montgomery/fold_1.py | 7 +++----
src/ptbench/data/montgomery/fold_2.py | 7 +++----
src/ptbench/data/montgomery/fold_3.py | 8 +++-----
src/ptbench/data/montgomery/fold_4.py | 8 +++-----
src/ptbench/data/montgomery/fold_5.py | 8 +++-----
src/ptbench/data/montgomery/fold_6.py | 8 +++-----
src/ptbench/data/montgomery/fold_7.py | 8 +++-----
src/ptbench/data/montgomery/fold_8.py | 8 +++-----
src/ptbench/data/montgomery/fold_9.py | 8 +++-----
11 files changed, 34 insertions(+), 51 deletions(-)
diff --git a/src/ptbench/data/montgomery/default.py b/src/ptbench/data/montgomery/default.py
index bc93c593..5a0aad35 100644
--- a/src/ptbench/data/montgomery/default.py
+++ b/src/ptbench/data/montgomery/default.py
@@ -10,11 +10,11 @@ This configuration:
* Raw data input (on disk):
- * PNG images 12 bit grayscale
+ * PNG images 8 bit grayscale
* resolution: 4020 x 4892 px or 4892 x 4020 px
* Output image:
-
+
* Transforms:
* Load raw PNG with :py:mod:`PIL`
@@ -25,11 +25,11 @@ This configuration:
* Final specifications
* Fixed resolution: 512 x 512 px
- * Color RGB encoding
+ * Grayscale (single channel), 8 bits
Protocol ``default``:
-
+
* Training samples: first 64% of TB and healthy CXR (including labels)
* Validation samples: 16% of TB and healthy CXR (including labels)
* Test samples: 20% of TB and healty CXR (including labels)
diff --git a/src/ptbench/data/montgomery/fold_0.py b/src/ptbench/data/montgomery/fold_0.py
index 04376951..8567b7a5 100644
--- a/src/ptbench/data/montgomery/fold_0.py
+++ b/src/ptbench/data/montgomery/fold_0.py
@@ -10,11 +10,11 @@ This configuration:
* Raw data input (on disk):
- * PNG images 12 bit grayscale
+ * PNG images 8 bit grayscale
* resolution: 4020 x 4892 px or 4892 x 4020 px
* Output image:
-
+
* Transforms:
* Load raw PNG with :py:mod:`PIL`
@@ -25,7 +25,7 @@ This configuration:
* Final specifications
* Fixed resolution: 512 x 512 px
- * Color RGB encoding
+ * Grayscale (single channel), 8 bits
"""
import importlib.resources
@@ -42,4 +42,3 @@ datamodule = CachingDataModule(
),
raw_data_loader=RawDataLoader(),
)
-
diff --git a/src/ptbench/data/montgomery/fold_1.py b/src/ptbench/data/montgomery/fold_1.py
index 8500456b..6b9679b2 100644
--- a/src/ptbench/data/montgomery/fold_1.py
+++ b/src/ptbench/data/montgomery/fold_1.py
@@ -10,11 +10,11 @@ This configuration:
* Raw data input (on disk):
- * PNG images 12 bit grayscale
+ * PNG images 8 bit grayscale
* resolution: 4020 x 4892 px or 4892 x 4020 px
* Output image:
-
+
* Transforms:
* Load raw PNG with :py:mod:`PIL`
@@ -25,7 +25,7 @@ This configuration:
* Final specifications
* Fixed resolution: 512 x 512 px
- * Color RGB encoding
+ * Grayscale (single channel), 8 bits
"""
import importlib.resources
@@ -42,4 +42,3 @@ datamodule = CachingDataModule(
),
raw_data_loader=RawDataLoader(),
)
-
diff --git a/src/ptbench/data/montgomery/fold_2.py b/src/ptbench/data/montgomery/fold_2.py
index e4b7a614..b2bcc3cd 100644
--- a/src/ptbench/data/montgomery/fold_2.py
+++ b/src/ptbench/data/montgomery/fold_2.py
@@ -10,11 +10,11 @@ This configuration:
* Raw data input (on disk):
- * PNG images 12 bit grayscale
+ * PNG images 8 bit grayscale
* resolution: 4020 x 4892 px or 4892 x 4020 px
* Output image:
-
+
* Transforms:
* Load raw PNG with :py:mod:`PIL`
@@ -25,7 +25,7 @@ This configuration:
* Final specifications
* Fixed resolution: 512 x 512 px
- * Color RGB encoding
+ * Grayscale (single channel), 8 bits
"""
import importlib.resources
@@ -42,4 +42,3 @@ datamodule = CachingDataModule(
),
raw_data_loader=RawDataLoader(),
)
-
diff --git a/src/ptbench/data/montgomery/fold_3.py b/src/ptbench/data/montgomery/fold_3.py
index 719bf004..63bc27ec 100644
--- a/src/ptbench/data/montgomery/fold_3.py
+++ b/src/ptbench/data/montgomery/fold_3.py
@@ -10,11 +10,11 @@ This configuration:
* Raw data input (on disk):
- * PNG images 12 bit grayscale
+ * PNG images 8 bit grayscale
* resolution: 4020 x 4892 px or 4892 x 4020 px
* Output image:
-
+
* Transforms:
* Load raw PNG with :py:mod:`PIL`
@@ -25,7 +25,7 @@ This configuration:
* Final specifications
* Fixed resolution: 512 x 512 px
- * Color RGB encoding
+ * Grayscale (single channel), 8 bits
"""
import importlib.resources
@@ -42,5 +42,3 @@ datamodule = CachingDataModule(
),
raw_data_loader=RawDataLoader(),
)
-
-
diff --git a/src/ptbench/data/montgomery/fold_4.py b/src/ptbench/data/montgomery/fold_4.py
index 2e97b114..cbf31799 100644
--- a/src/ptbench/data/montgomery/fold_4.py
+++ b/src/ptbench/data/montgomery/fold_4.py
@@ -10,11 +10,11 @@ This configuration:
* Raw data input (on disk):
- * PNG images 12 bit grayscale
+ * PNG images 8 bit grayscale
* resolution: 4020 x 4892 px or 4892 x 4020 px
* Output image:
-
+
* Transforms:
* Load raw PNG with :py:mod:`PIL`
@@ -25,7 +25,7 @@ This configuration:
* Final specifications
* Fixed resolution: 512 x 512 px
- * Color RGB encoding
+ * Grayscale (single channel), 8 bits
"""
import importlib.resources
@@ -42,5 +42,3 @@ datamodule = CachingDataModule(
),
raw_data_loader=RawDataLoader(),
)
-
-
diff --git a/src/ptbench/data/montgomery/fold_5.py b/src/ptbench/data/montgomery/fold_5.py
index 4df1451d..aca9c62b 100644
--- a/src/ptbench/data/montgomery/fold_5.py
+++ b/src/ptbench/data/montgomery/fold_5.py
@@ -10,11 +10,11 @@ This configuration:
* Raw data input (on disk):
- * PNG images 12 bit grayscale
+ * PNG images 8 bit grayscale
* resolution: 4020 x 4892 px or 4892 x 4020 px
* Output image:
-
+
* Transforms:
* Load raw PNG with :py:mod:`PIL`
@@ -25,7 +25,7 @@ This configuration:
* Final specifications
* Fixed resolution: 512 x 512 px
- * Color RGB encoding
+ * Grayscale (single channel), 8 bits
"""
import importlib.resources
@@ -42,5 +42,3 @@ datamodule = CachingDataModule(
),
raw_data_loader=RawDataLoader(),
)
-
-
diff --git a/src/ptbench/data/montgomery/fold_6.py b/src/ptbench/data/montgomery/fold_6.py
index d0b36115..ac5cdd57 100644
--- a/src/ptbench/data/montgomery/fold_6.py
+++ b/src/ptbench/data/montgomery/fold_6.py
@@ -10,11 +10,11 @@ This configuration:
* Raw data input (on disk):
- * PNG images 12 bit grayscale
+ * PNG images 8 bit grayscale
* resolution: 4020 x 4892 px or 4892 x 4020 px
* Output image:
-
+
* Transforms:
* Load raw PNG with :py:mod:`PIL`
@@ -25,7 +25,7 @@ This configuration:
* Final specifications
* Fixed resolution: 512 x 512 px
- * Color RGB encoding
+ * Grayscale (single channel), 8 bits
"""
import importlib.resources
@@ -42,5 +42,3 @@ datamodule = CachingDataModule(
),
raw_data_loader=RawDataLoader(),
)
-
-
diff --git a/src/ptbench/data/montgomery/fold_7.py b/src/ptbench/data/montgomery/fold_7.py
index b132b30e..edf8957a 100644
--- a/src/ptbench/data/montgomery/fold_7.py
+++ b/src/ptbench/data/montgomery/fold_7.py
@@ -10,11 +10,11 @@ This configuration:
* Raw data input (on disk):
- * PNG images 12 bit grayscale
+ * PNG images 8 bit grayscale
* resolution: 4020 x 4892 px or 4892 x 4020 px
* Output image:
-
+
* Transforms:
* Load raw PNG with :py:mod:`PIL`
@@ -25,7 +25,7 @@ This configuration:
* Final specifications
* Fixed resolution: 512 x 512 px
- * Color RGB encoding
+ * Grayscale (single channel), 8 bits
"""
import importlib.resources
@@ -42,5 +42,3 @@ datamodule = CachingDataModule(
),
raw_data_loader=RawDataLoader(),
)
-
-
diff --git a/src/ptbench/data/montgomery/fold_8.py b/src/ptbench/data/montgomery/fold_8.py
index 73169ca0..ed0e5a91 100644
--- a/src/ptbench/data/montgomery/fold_8.py
+++ b/src/ptbench/data/montgomery/fold_8.py
@@ -10,11 +10,11 @@ This configuration:
* Raw data input (on disk):
- * PNG images 12 bit grayscale
+ * PNG images 8 bit grayscale
* resolution: 4020 x 4892 px or 4892 x 4020 px
* Output image:
-
+
* Transforms:
* Load raw PNG with :py:mod:`PIL`
@@ -25,7 +25,7 @@ This configuration:
* Final specifications
* Fixed resolution: 512 x 512 px
- * Color RGB encoding
+ * Grayscale (single channel), 8 bits
"""
import importlib.resources
@@ -42,5 +42,3 @@ datamodule = CachingDataModule(
),
raw_data_loader=RawDataLoader(),
)
-
-
diff --git a/src/ptbench/data/montgomery/fold_9.py b/src/ptbench/data/montgomery/fold_9.py
index 18561f80..476463f0 100644
--- a/src/ptbench/data/montgomery/fold_9.py
+++ b/src/ptbench/data/montgomery/fold_9.py
@@ -10,11 +10,11 @@ This configuration:
* Raw data input (on disk):
- * PNG images 12 bit grayscale
+ * PNG images 8 bit grayscale
* resolution: 4020 x 4892 px or 4892 x 4020 px
* Output image:
-
+
* Transforms:
* Load raw PNG with :py:mod:`PIL`
@@ -25,7 +25,7 @@ This configuration:
* Final specifications
* Fixed resolution: 512 x 512 px
- * Color RGB encoding
+ * Grayscale (single channel), 8 bits
"""
import importlib.resources
@@ -42,5 +42,3 @@ datamodule = CachingDataModule(
),
raw_data_loader=RawDataLoader(),
)
-
-
--
GitLab