[many] Bump minor versions to build some packages as .conda (c.f. bob.devtools#46)

conda/beat-devel/meta.yaml

@@ -2,7 +2,7 @@
 {% set nopin = ['ca-certificates', 'certifi', 'openssl', 'libstdcxx-ng', 'libgcc-ng', 'libcxx', 'libcxxabi'] %}
 package:
   name: beat-devel
-  version: 2019.10.17
+  version: 2019.12.19
 
 build:
   # the build number must be zero all the time.
@@ -15,17 +15,17 @@ build:
 requirements:
   host:
     - python {{ python }}
-    - bob-devel 2019.10.17
+    - bob-devel 2019.12.19
     - docker-py 4.0.2
-    - flask 1.0.2
-    - flask-cors 3.0.7
+    - flask 1.0.3
+    - flask-cors 3.0.8
     - flask-restful 0.3.6
-    - jsonschema 3.0.1
+    - jsonschema 3.0.2
     - nodejs 8.9.3
     - python-graphviz 0.8.4
     - pyzmq 17.1.2
-    - simplejson 3.16.0
-    - sphinxcontrib-programoutput 0.14
+    - simplejson 3.17.0
+    - sphinxcontrib-programoutput 0.15
     - sphinxcontrib-httpdomain 1.7.0
     - psycopg2 2.7.6.1
     - ncurses 6.1

conda/bob-devel/meta.yaml

@@ -4,7 +4,7 @@ package:
   name: bob-devel
   # please update the version of beat-devel and update bob-devel's version
   # there as well in the same merge request.
-  version: 2019.10.17
+  version: 2019.12.19
 
 build:
   # the build number must be zero all the time.

conda/cyvlfeat/meta.yaml

@@ -12,7 +12,7 @@ source:
   sha256: {{ sha256 }}
 
 build:
-  number: 0
+  number: 1
 
 requirements:
   build:

conda/ffmpeg/meta.yaml

@@ -22,7 +22,7 @@ source:
   sha256: 8fe2d344463dbefc2db4239a4203a55ed0324faceaae57276a40c4fabda84c37  # [win64]
 
 build:
-  number: 1
+  number: 2
   # The windows build is repacking binaries rather than building from source
   skip: True  # [win]
   run_exports:

conda/ipdb/meta.yaml

-{% set version = "0.12.2" %}
+{% set version = "0.12.3" %}
 
 package:
   name: ipdb
@@ -6,7 +6,7 @@ package:
 
 source:
   url: https://pypi.io/packages/source/i/ipdb/ipdb-{{ version }}.tar.gz
-  sha256: 473fdd798a099765f093231a8b1fabfa95b0b682fce12de0c74b61a4b4d8ee57
+  sha256: 5d9a4a0e3b7027a158fc6f2929934341045b9c3b0b86ed5d7e84e409653f72fd
 
 build:
   number: 0

conda/libmatio/build.sh

@@ -5,7 +5,8 @@
   --enable-extended-sparse \
   --prefix="${PREFIX}" \
   --with-zlib="${PREFIX}" \
-  --with-hdf5="${PREFIX}"
+  --with-hdf5="${PREFIX}" \
+  --with-default-api-version=v110
 make
 
 if [[ `uname` == 'Darwin' ]];

conda/libmatio/meta.yaml

-{% set version = "1.5.15" %}
+{% set version = "1.5.17" %}
 package:
   name: libmatio
   version: {{ version }}
 
 source:
-  fn: matio-{{ version }}.tar.gz
-  url: https://github.com/tbeu/matio/releases/download/v{{ version }}/matio-{{ version }}.tar.gz
-  md5: b1436ac47cf66d53ed9f892d0ae027ca
+  git_url: https://github.com/tbeu/matio.git
+  git_rev: {{ version }}
 
 build:
   number: 0

conda/libogg/meta.yaml

@@ -12,7 +12,7 @@ source:
   sha256: {{ sha256 }}
 
 build:
-  number: 1
+  number: 2
   features:
     - vc9  # [win and py27]
     - vc10  # [win and py34]

conda/libsvm/meta.yaml

-{% set version = "3.22" %}
+{% set version = "3.24" %}
 {% set flatversion = version.replace(".", "") %}
+{% set sha256 = "3ba1ac74ee08c4dd57d3a9e4a861ffb57dab88c6a33fd53eac472fc84fbb2a8f" %}
 
 package:
   name: libsvm
@@ -8,7 +9,7 @@ package:
 source:
   fn: libsvm-{{ flatversion }}.tar.gz
   url: https://github.com/cjlin1/libsvm/archive/v{{ flatversion }}.tar.gz
-  md5: d9617d29efad013573f63ca9a517f490
+  sha256: {{ sha256 }}
 
   patches:
     - win32.patch  # [win32]

conda/menpo/meta.yaml

 {% set name = "menpo" %}
-{% set version = "0.9.1" %}
-{% set sha256 = "691f74ec6544bc56753b17a9f72d368f2928eaab5c2bf19673482552631683e9" %}
+{% set version = "0.9.2" %}
+{% set sha256 = "6d3de6e57886179053caecd7244dbf956d41c1290a7dd9728d1237af0d1dab02" %}
 
 package:
   name: {{ name }}
@@ -12,7 +12,7 @@ source:
   sha256: {{ sha256 }}
 
 build:
-  number: 1
+  number: 0
   script: python setup.py install --single-version-externally-managed --record=record.txt
   run_exports:
     - {{ pin_subpackage(name, max_pin='x.x') }}

conda/menpofit/meta.yaml

@@ -9,7 +9,7 @@ source:
   git_url: https://github.com/menpo/menpofit.git
 
 build:
-  number: 1
+  number: 2
   script: python setup.py install --single-version-externally-managed --record=record.txt
 
 requirements:

conda/nasm/meta.yaml

@@ -11,7 +11,7 @@ source:
   sha256: 4749fd76a8a26dc7d8871bc97cc2c16cfa0c933f984a13128e94f464f417531a
 
 build:
-  number: 0
+  number: 1
 
 requirements:
   build:

conda/openh264/meta.yaml

@@ -13,7 +13,7 @@ source:
   '{{ hash_type }}': '{{ hash_value }}'
 
 build:
-  number: 1
+  number: 2
   run_exports:
     # https://abi-laboratory.pro/tracker/timeline/openh264
     - {{ pin_subpackage(name, max_pin='x.x') }}

conda/ratelimiter/meta.yaml

-{% set version = "1.2.0.post0" %}
-
-package:
-  name: ratelimiter
-  version: {{ version }}
-
-source:
-  fn: ratelimiter-{{ version }}.tar.gz
-  url: https://pypi.io/packages/source/r/ratelimiter/ratelimiter-{{ version }}.tar.gz
-  sha256: 5c395dcabdbbde2e5178ef3f89b568a3066454a6ddc223b76473dac22f89b4f7
-
-build:
-  number: 0
-  noarch: python
-  script: python -m pip install --no-deps --ignore-installed .
-
-requirements:
-  build:
-    - pip
-    - python
-    - setuptools
-  run:
-    - python
-
-test:
-  imports:
-    - ratelimiter
-
-about:
-  home: https://github.com/RazerM/ratelimiter
-  license: Apache-2.0
-  license_family: APACHE
-  license_file: LICENSE
-  summary: Simple Python module providing rate limiting.
-  description: |
-    This package provides the ratelimiter module, which ensures that an operation
-    will not be executed more than a given number of times on a given period.
-    This can prove useful when working with third parties APIs which require
-    for example a maximum of 10 requests per second.
-
-extra:
-  recipe-maintainers:
-    - anjos

conda/schema/meta.yaml

-{% set version = "0.7.0" %}
+{% set version = "0.7.1" %}
 
 package:
   name: schema
@@ -6,10 +6,10 @@ package:
 
 source:
   url: https://pypi.io/packages/source/s/schema/schema-{{ version }}.tar.gz
-  sha256: 44add3ef9016c85ac4b0291b45286a657d0df309b31528ca8d0a9c6d0aa68186
+  sha256: c9dc8f4624e287c7d1435f8fd758f6a0aabbb7eff442db9192cd46f0e2b6d959
 
 build:
-  number: 1
+  number: 0
   script: python -m pip install --no-deps --ignore-installed .
 
 requirements:
@@ -20,7 +20,7 @@ requirements:
 
   run:
     - python
-    - contextlib2 0.5.5
+    - contextlib2 >=0.5.5
 
 test:
   requires:

conda/snakemake/meta.yaml

-{% set version = "5.5.4" %}
-
-package:
-  name: snakemake
-  version: {{ version }}
-
-source:
-  url: https://pypi.io/packages/source/s/snakemake/snakemake-{{ version }}.tar.gz
-  sha256: 44ef8e4d9850b2480f29ddbcc6d57540be9440d1422366bb3bb68e285377a959
-
-build:
-  noarch: python
-  script: python -m pip install --no-deps --ignore-installed .
-  entry_points:
-    - snakemake = snakemake:main
-    - snakemake-bash-completion = snakemake:bash_completion
-
-requirements:
-  host:
-    - python >=3.5
-    - pip
-    - setuptools
-  run:
-    - python >=3.5
-    - setuptools
-    - wrapt
-    - requests
-    - docutils
-    - pyyaml
-    - datrie
-    - requests >=2.8.1
-    - psutil
-    - ratelimiter
-    - configargparse
-    - appdirs
-    - jsonschema
-    - gitpython
-    - jinja2
-    - pygraphviz
-    - networkx >=2.0
-    - dropbox >=7.2.1
-    - pygments
-    # nice optionals not included with the default package
-    #- ftputil >=3.2
-    #- filechunkio >=1.6
-    #- pysftp >=0.2.8
-    #- aioeasywebdav
-    #- pandas  #not required "required"
-    #- python-irodsclient
-    #- google-cloud-storage
-    #- boto3
-
-test:
-  imports:
-    - snakemake
-  commands:
-    - export GIT\_PYTHON_REFRESH=warn
-    - snakemake --version
-    - snakemake --version | grep "{{ version }}"
-
-about:
-  home: https://snakemake.readthedocs.io
-  license: MIT
-  summary: A popular workflow management system aiming at full in-silico reproducibility.
-  description: |
-    Snakemake is a workflow management system that aims to reduce the
-    complexity of creating workflows by providing a fast and comfortable
-    execution environment, together with a clean and modern specification
-    language in python style. Snakemake workflows are essentially Python
-    scripts extended by declarative code to define rules. Rules describe how to
-    create output files from input files. This installation is copied from
-    bioconda and contains a more or less "packed" setup, with most used
-    functionality.
-
-extra:
-  skip-lints:
-    - uses_setuptools  # uses pkg_resoures during run time
-  recipe-maintainers:
-    - anjos

conda/sox/meta.yaml

@@ -11,7 +11,7 @@ source:
   md5: d04fba2d9245e661f245de0577f48a33
 
 build:
-  number: 7
+  number: 8
   detect_binary_files_with_prefix: true
   skip: true  # [win]
   run_exports:

conda/sphinxcontrib-httpdomain/meta.yaml

@@ -10,7 +10,7 @@ source:
   sha256: ac40b4fba58c76b073b03931c7b8ead611066a6aebccafb34dc19694f4eb6335
 
 build:
-  number: 0
+  number: 1
   script: "{{ PYTHON }} -m pip install --no-deps --ignore-installed --no-cache-dir ."
 
 requirements:

conda/sphinxcontrib-programoutput/meta.yaml

 {% set name = "sphinxcontrib-programoutput" %}
-{% set version = "0.14" %}
-{% set sha256 = "75b182e9e8cf7efe828cac2c351bb737b00a76bc3aa60fd1a9b2b7096e99c383" %}
+{% set version = "0.15" %}
+{% set sha256 = "80dd5b4eab780a13ff2c23500cac3dbf0e04ef9976b409ef25a47c263ef8ab94" %}
 
 package:
   name: {{ name|lower }}

conda/zc.buildout/meta.yaml

@@ -9,7 +9,7 @@ source:
   git_url: https://github.com/buildout/buildout.git
 
 build:
-  number: 0
+  number: 1
   script: python setup.py install --single-version-externally-managed --record=record.txt
 
   entry_points: