Improved build system

bob/bio/face/test/test_algorithms.py

@@ -25,7 +25,6 @@ import os
 import numpy
 import math
 import tempfile
-import facereclib
 from nose.plugins.skip import SkipTest
 
 import pkg_resources
@@ -112,60 +111,3 @@ def test_lgbphs():
   reference *= 2.
   assert abs(lgbphs.score(model2, feature2) - reference) < 1e-5
   assert abs(lgbphs.score_for_multiple_probes(model2, [feature2, feature2]) - reference) < 1e-5
-
-
-"""
-  def test09_plda(self):
-    # read input
-    feature = facereclib.utils.load(self.input_dir('linearize.hdf5'))
-    # assure that the config file is readable
-    tool = self.config('pca+plda')
-    self.assertTrue(isinstance(tool, facereclib.tools.PLDA))
-
-    # here, we use a reduced complexity for test purposes
-    tool = facereclib.tools.PLDA(
-        subspace_dimension_of_f = 2,
-        subspace_dimension_of_g = 2,
-        subspace_dimension_pca = 10,
-        plda_training_iterations = 1,
-        INIT_SEED = seed_value,
-    )
-    self.assertFalse(tool.performs_projection)
-    self.assertTrue(tool.requires_enroller_training)
-
-    # train the projector
-    t = tempfile.mkstemp('pca+plda.hdf5', prefix='frltest_')[1]
-    tool.train_enroller(facereclib.utils.tests.random_training_set_by_id(feature.shape, count=20, minimum=0., maximum=255.), t)
-    if regenerate_refs:
-      import shutil
-      shutil.copy2(t, self.reference_dir('pca+plda_enroller.hdf5'))
-
-    # load the projector file
-    tool.load_enroller(self.reference_dir('pca+plda_enroller.hdf5'))
-    # compare the resulting machines
-    test_file = bob.io.base.HDF5File(t)
-    test_file.cd('/pca')
-    pca_machine = bob.learn.linear.Machine(test_file)
-    test_file.cd('/plda')
-    plda_machine = bob.learn.em.PLDABase(test_file)
-    # TODO: compare the PCA machines
-    #self.assertEqual(pca_machine, tool.m_pca_machine)
-    # TODO: compare the PLDA machines
-    #self.assertEqual(plda_machine, tool.m_plda_base_machine)
-    os.remove(t)
-
-    # enroll model
-    model = tool.enroll([feature])
-    if regenerate_refs:
-      model.save(bob.io.base.HDF5File(self.reference_dir('pca+plda_model.hdf5'), 'w'))
-    # TODO: compare the models with the reference
-    #reference_model = tool.read_model(self.reference_dir('pca+plda_model.hdf5'))
-    #self.assertEqual(model, reference_model)
-
-    # score
-    sim = tool.score(model, feature)
-    self.assertAlmostEqual(sim, 0.)
-    # score with a concatenation of the probe
-    self.assertAlmostEqual(tool.score_for_multiple_probes(model, [feature, feature]), 0.)
-
-"""

buildout.cfg

@@ -4,17 +4,35 @@
 
 [buildout]
 parts = scripts
-eggs = bob.learn.linear
-       bob.learn.em
-       bob.bio.base
-       bob.bio.gmm
-       bob.bio.face
+eggs = bob.bio.face
+       gridtk
+       
 extensions = bob.buildout
-
-develop = ../../bob/layers/1/bob.learn.linear
-          ../../bob/layers/1/bob.learn.em
-          ../bob.bio.base
-          ../bob.bio.gmm
+             mr.developer
+auto-checkout = *
+develop = src/bob.extension
+          src/bob.blitz
+          src/bob.core
+          src/bob.io.base
+          src/bob.io.image
+          src/bob.learn.activation
+          src/bob.math
+          src/bob.learn.linear
+          src/bob.sp
+          src/bob.ip.base
+          src/bob.ip.color
+          src/bob.ip.draw
+          src/bob.ip.gabor
+          src/bob.learn.em
+          src/bob.measure
+          src/bob.db.base
+          src/bob.db.verification.utils
+          src/bob.db.verification.filelist
+          src/bob.db.atnt
+          src/bob.bio.base
+          src/bob.learn.boosting
+          src/bob.ip.facedetect
+          src/bob.ip.flandmark
           .
 
 ; options for bob.buildout
@@ -22,6 +40,32 @@ debug = true
 verbose = true
 newest = false
 
+[sources]
+bob.extension = git https://github.com/bioidiap/bob.extension
+bob.blitz = git https://github.com/bioidiap/bob.blitz
+bob.core = git https://github.com/bioidiap/bob.core
+bob.io.base = git https://github.com/bioidiap/bob.io.base
+bob.io.image = git https://github.com/bioidiap/bob.io.image
+bob.learn.activation = git https://github.com/bioidiap/bob.learn.activation
+bob.math = git https://github.com/bioidiap/bob.math
+bob.sp = git https://github.com/bioidiap/bob.sp
+bob.ip.base = git https://github.com/bioidiap/bob.ip.base
+bob.ip.color = git https://github.com/bioidiap/bob.ip.color
+bob.ip.draw = git https://github.com/bioidiap/bob.ip.draw
+bob.ip.gabor = git https://github.com/bioidiap/bob.ip.gabor
+bob.learn.linear = git https://github.com/bioidiap/bob.learn.linear
+bob.learn.em = git https://github.com/bioidiap/bob.learn.em
+bob.measure = git https://github.com/bioidiap/bob.measure
+bob.db.base = git https://github.com/bioidiap/bob.db.base
+bob.db.verification.utils = git https://github.com/bioidiap/bob.db.verification.utils
+bob.db.verification.filelist = git https://github.com/bioidiap/bob.db.verification.filelist
+bob.db.atnt = git https://github.com/bioidiap/bob.db.atnt
+bob.bio.base = git https://github.com/bioidiap/bob.bio.base
+bob.learn.boosting = git https://github.com/bioidiap/bob.learn.boosting
+bob.ip.facedetect = git https://github.com/bioidiap/bob.ip.facedetect
+bob.ip.flandmark = git https://github.com/bioidiap/bob.ip.flandmark
+
+
 [scripts]
 recipe = bob.buildout:scripts
 dependent-scripts = true

requirements.txt

+setuptools
+bob.extension
+bob.blitz 
+bob.core 
+bob.io.base 
+bob.io.image 
+bob.learn.activation
+bob.math 
+bob.sp 
+bob.ip.base 
+bob.ip.color 
+bob.ip.draw 
+bob.ip.gabor
+bob.learn.linear 
+bob.learn.em 
+bob.measure 
+bob.db.base
+bob.db.verification.utils 
+bob.db.verification.filelist
+bob.db.atnt  # required for testing
+bob.bio.base 
+bob.learn.boosting 
+bob.ip.facedetect
+bob.ip.flandmark
+matplotlib   # for plotting

setup.py

@@ -33,7 +33,11 @@
 # allows you to test your package with new python dependencies w/o requiring
 # administrative interventions.
 
-from setuptools import setup, find_packages
+from setuptools import setup, find_packages, dist
+dist.Distribution(dict(setup_requires=['bob.extension']))
+
+from bob.extension.utils import load_requirements
+install_requires = load_requirements()
 
 # The only thing we do in this file is to call the setup() function with all
 # parameters that define our package.
@@ -64,11 +68,7 @@ setup(
     # on the current system will be installed locally and only visible to the
     # scripts of this package. Don't worry - You won't need administrative
     # privileges when using buildout.
-    install_requires = [
-      'setuptools',
-      'bob.bio.base',
-      'bob.bio.gmm',
-    ],
+    install_requires = install_requires,
 
     # Your project should be called something like 'bob.<foo>' or
     # 'bob.<foo>.<bar>'. To implement this correctly and still get all your