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Updating the changelog for Bob's release

Merged Pavel KORSHUNOV requested to merge updatelog into master
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* bob.buildout
* v2.1.3 (Sep 22, 2017 10:37)
* port to new CI/CD
* v2.1.4 (Sep 22, 2017 11:34)
* port to new CI/CD
* v2.1.5 (Sep 22, 2017 13:58)
* no significant changes
* v2.1.6 (Feb 27, 2018 16:29)
* Enables built-in conda packaging
* Provides user/development guides
* Provides an alternative for gdb (based on lldb) for MacOS
* Improve handling of environments for Python 3.6 (issue #24)
* none
* bob.extension
* major
* Big changes to the documentation of this package: divided guide in
package development and package creation; added section for implementing
configuration and command-line application for bob extensions.
* Initial implementation for a (more) centrally-available python-based
configuration system. The implementation is based on the config-file
support that existed in bob.bio.base. Since the initial port, it has
improved quite a lot to support a number of features. Check the
documentation for details and how to use these on your packages.
* Initial implementation of a command-line infrastructure for bob
packages. The implementation is based on click and extensible to other
packages in the Bob framework. Check the documentation for details.
* Added support for stacked processors
* Fixes for compilation from scratch on newer versions of gcc, namely by
having a more comprehensive use of "-isystem"
* Improvements to our internal search-path functionality for building
other packages
* Ported to new CI/CD
* bob.blitz
* minor
* Migrate to conda based CI
* bob.core
* minor
* Migrate to conda based CI
* Fix test values (closes bob.core#8)
* Use log modules from bob.extension
* improve tests
* bob.io.base
* minor
* Migrate to conda based CI
* bob.math
* minor
* Migrate to conda based CI
* Add blas features
* trust numpy in finding blas/lapack. Fixes bob.math#14
* bob.measure
* major
* Fixed issue with FAR and FRR values being exactly 1 or 0
* Corrected the threshold calculation in far_threshold() and frr_threshold(), which now guarantees to produce at most of given FAR or FRR values.
* Never return NaNs for far_threshold() and frr_threshold() functions
* Optimized implementation of ROC for a given FAR
* Added an option to capture the output in a log file
* Updated docs and tests accordingly
* bob.io.image
* minor
* Fixed issue with PGM image load when such images have extra bytes, see bob.io.image!36
* Migrate to conda based CI
* bob.db.base
* major
* Migrate to conda based CI
* Implemented local file upload bob.db.base#20
* Added support for JSON annotation format
* Unified use of `original_directory` and `original_extension`
* Minor improvements
* bob.io.video
* minor
* Migrate to conda based CI
* adjust test values to openh264
* Revamped code for ffmpeg-3.1+ s
* Fixes bob.io.video#10
* bob.io.matlab
* minor
* Migrate to conda based CI
* bob.io.audio
* minor
* Migrate to conda based CI
* bob.sp
* minor
* Migrate to conda based CI
* bob.ap
* minor
* Migrate to conda based CI
* bob.ip.base
* minor
* Improved compatibility for non-C++-11 compilers
* Migrate to conda based CI
* Fix matplotlib requirement
* bob.ip.color
* minor
* Migrate to conda based CI
* bob.ip.draw
* minor
* Migrate to conda based CI
* bob.ip.gabor
* minor
* Migrate to conda based CI
* bob.learn.activation
* minor
* Migrate to conda based CI
* bob.learn.libsvm
* minor
* Migrate to conda based CI
* Makes sure we can load/save files with arbitrary extensions
* bob.learn.linear
* minor
* Migrate to conda based CI
* bob.learn.mlp
* minor
* Migrate to conda based CI
* bob.learn.boosting
* minor
* Migrate to conda based CI
* bob.db.iris
* minor
* Migrate to conda based CI
* bob.learn.em
* minor
* Migrate to conda based CI
* Add test time dependencies
* remove unused ref 5. please see bob.learn.em#27
* bob.db.wine
* minor
* Migrate to conda based CI
* bob.db.mnist
* minor
* Migrate to conda based CI
* Now download metadata during build
* bob.db.atnt
* minor
* Migrate to conda based CI
* bob.ip.facedetect
* minor
* Migrate to conda based CI
* bob.ip.optflow.hornschunck
* minor
* Migrate to conda based CI
* bob.ip.optflow.liu
* minor
* Migrate to conda based CI
* bob.ip.flandmark
* minor
* Migrate to conda based CI
* gridtk
* v1.5.0 (Nov 20, 2017 09:07)
* Implemented the option `--repeat <n>` in jman submit. Now we can submit the same job `n` times in a serial manner -- Merge gridtk!10
* Appended the idiap gpu short queue in our queue list
* Improved python 3 compatibility (Merge gridtk!7)
* Created the `jgen` tool (https://www.idiap.ch/software/bob/docs/bob/gridtk/master/generate.html) -- Merge gridtk!8
* Removed overwriting job ID when stopping jobs
* minor
* `jgen` tool: added an option `--unique-aggregate` to make the aggregate output unique
* Migrate to conda based CI
* Improve tests and docs
* bob.ip.qualitymeasure
* minor
* Migrated to conda based CI
* Updates in the README
* Removed bootstrap-buildout functionality
* Added an optional reference image to Galbally IQM extractor
* bob.ip.skincolorfilter
* minor
* Migrate to conda based CI
* bob.ip.facelandmarks
* minor
* Migrate to conda based CI
* bob.ip.dlib
* v1.0.2 (Oct 19, 2017 10:18)
* Fixed issue with possible negative coordinates and empty image
* patch
* Migrate to conda based CI
* Improved documentation and tests
* bob.db.arface
* v2.1.4 (Sep 22, 2017 14:17)
* minor
* Migrate to conda based CI
* bob.db.asvspoof
* v1.0.3 (Sep 22, 2017 14:20)
* minor
* Migrate to conda based CI
* Removed redundant debug_asvspoof2017 script
* bob.db.asvspoof2017
* v1.0.3 (Sep 22, 2017 14:20)
* minor
* Migrate to conda based CI
* Removed redundant debug_asvspoof2017 script
* bob.db.atvskeystroke
* v2.1.5 (Sep 22, 2017 14:21)
* minor
* Migrate to conda based CI
* bob.db.avspoof
* v2.2.8 (Sep 22, 2017 14:22)
* minor
* Migrate to conda based CI
* Removed redundant debug_avspoof.py script
* bob.db.banca
* v2.1.5 (Sep 22, 2017 14:22)
* minor
* Migrate to conda based CI
* bob.db.biosecure
* v2.1.5 (Sep 22, 2017 14:22)
* minor
* Migrate to conda based CI
* bob.db.biosecurid.face
* v2.1.8 (Sep 22, 2017 14:22)
* minor
* Migrate to conda based CI
* bob.db.casme2
* v2.1.5 (Sep 22, 2017 14:23)
* minor
* Migrate to conda based CI
* bob.db.caspeal
* v2.1.5 (Sep 22, 2017 14:23)
* minor
* Migrate to conda based CI
* bob.db.cohface
* v1.0.4 (Sep 22, 2017 14:24)
* minor
* Migrate to conda based CI
* Add a ref to the package name
* bob.db.frgc
* v2.1.3 (Sep 22, 2017 14:24)
* minor
* Migrate to conda based CI
* bob.db.gbu
* v2.1.4 (Sep 22, 2017 14:24)
* minor
* Migrate to conda based CI
* bob.db.hci_tagging
* v1.0.4 (Sep 22, 2017 14:28)
* minor
* Migrate to conda based CI
* Add a ref to the package name
* bob.db.ijba
* v2.0.3 (Sep 22, 2017 14:28)
* minor
* Added missing dependency to bob.io.image (from bob.db.base)
* Migrate to conda based CI
* Added bob.measure as requirement
* Some functionality was moved to bob.bio.face
* bob.db.kboc16
* v2.0.11 (Sep 22, 2017 14:28)
* minor
* Migrate to conda based CI
* Add a ref to the package name
* bob.db.lfw
* v2.1.5 (Sep 22, 2017 14:28)
* minor
* Migrate to conda based CI
* bob.db.livdet2013
* v2.0.6 (Sep 22, 2017 14:29)
* minor
* Migrate to conda based CI
* This package does not download metadata (closes bob.db.livdet2013#1)
* Add a ref to the package name
* bob.db.mobio
* v2.1.5 (Sep 22, 2017 14:29)
* minor
* Update README.rst
* Migrate to conda based CI
* bob.db.msu_mfsd_mod
* v2.2.3 (Sep 22, 2017 14:29)
* minor
* Migrate to conda based CI
* bob.db.multipie
* v2.1.4 (Sep 22, 2017 14:29)
* minor
* Migrate to conda based CI
* bob.db.nist_sre12
* v3.0.3 (Sep 22, 2017 14:30)
* minor
* Migrate to conda based CI
* bob.db.putvein
* v1.2.1 (Sep 22, 2017 14:30)
* minor
* Fix packaging warnings
* Migrate to conda based CI
* Stop downloading metadata (closes bob.db.putvein#2)
* bob.db.replay
* v3.0.3 (Sep 22, 2017 14:31)
* minor
* Migrate to conda based CI
* bob.db.replaymobile
* v1.1.3 (Sep 22, 2017 14:31)
* minor
* Migrate to conda based CI
* bob.db.scface
* v2.1.5 (Sep 22, 2017 14:31)
* minor
* Migrate to conda based CI
* bob.db.utfvp
* v2.4.1 (Sep 22, 2017 14:32)
* Packaging changes - no changes to software.
* major
* Migrate to conda based CI
* Overall database refactoring; Improved docs and tests
* Add information on the annotations
* bob.db.verafinger
* v1.0.0 (Oct 11, 2017 14:24)
* Initial release of new VERA fingervein database interface. Deprecates https://gitlab.idiap.ch/bob/bob.db.vera.
* major
* Migrate to conda based CI
* Add information on the annotations
* Unify biometric/presentation-attack interfaces
* Implement cropped biometric recognition protocols
* Improved documentation and simplified protocol files
* bob.db.fv3d
* v1.0.0 (Oct 11, 2017 15:42)
* Distribute metadata from webserver
* minor
* Fixes to model.id -> model.name as model identifier
* Migrate to conda based CI
* bob.db.hkpu
* major
* Initial release of Hong Kong Polytechnic University Finger Image Database
* Added docs and tests
* Update HKPU filelist with new annotations
* Migrate to conda based CI (closes bob.db.hkpu#1)
* bob.db.thufvdt
* major
* Initial release of Tsinghua University Finger Vein and Finger Dorsal Texture Database
* Added docs and tests
* Added protocols so they match paper descriptions
* Added functions to detect and load RoI annotations
* Migrate to conda based CI (closes bob.db.thufvdt#1)
* bob.db.mmcbnu6k
* major
* Initial release of Chonbuk Nation University Fingervein Database
* Add protocols and annotations
* Fixes to model.id -> model.name as model identifier
* Added docs and tests
* Migrate to conda based CI (closes bob.db.mmcbnu6k#1)
* bob.db.hmtvein
* major
* Initial release of Homologous Multimodal Traits (Fingervein) Database
* Fixes to model.id -> model.name as model identifier
* Return any finger name (all are the same) given the first found model
* Added annotations, documentation, and tests
* Migrate to conda based CI (closes bob.db.hmtvein#1)
* bob.db.voicepa
* v1.0.2 (Sep 22, 2017 14:34)
* minor
* Migrate to conda based CI
* fixing issue bob.db.voicepa#1
* bob.db.xm2vts
* v2.1.4 (Sep 22, 2017 14:36)
* minor
* Migrate to conda based CI
* bob.db.youtube
* v2.1.4 (Sep 22, 2017 14:37)
* minor
* Migrate to conda based CI
* bob.db.pericrosseye
* minor
* Migrate to conda based CI
* bob.db.cuhk_cufs
* minor
* Created methods modality_separator and modalities
* Included test case for objects.modality
* bob.bio.base
* v3.3.0 (Sep 22, 2017 13:41)
* bob.bio.base!20 Docs url fix
* bob.bio.base!19 Python36 & docs fixes
* bob.bio.base!18 Removed `Algorithm.read_probe`
* major
* Add as_array to frame containers
* Make the original_directory and annotation_directory a property
* Fixed tuple indexing bug in youtube db load function and added tests
* Updated docs and tests
* Fixed bob.bio.base#11
* Added video annotator, updated documentation accordingly
* Migrate to conda based CI
* bob.bio.gmm
* v3.1.0 (Sep 22, 2017 14:05)
* bob.bio.gmm!10 Removed Algorithm.read_probe method, since this is already solved via bob.bio.base
* bob.bio.gmm!9 Use generators instead of list to concatenate the loaded training data
* bob.bio.gmm!12 Doc fixes
* bob.bio.gmm!11 Python36 & docs fixes
* minor
* Migrate to conda based CI
* Propagated --allow-missing-files to the UBM training
* Fixed issue bob.bio.gmm#22
* bob.bio.face
* v3.3.0 (Sep 22, 2017 13:17)
* bob.bio.face!78 Removed Algorithm.read_probe method, since this is already solved via bob.bio.base
* bob.bio.face!33 improve the score files by adding attack type information
* [ci] Droped python 3.4 support and added python 3.6
* bob.bio.face!30 Updated baseline script to search for executables
* major
* Implemented IJBA customized plot
* Make the original_directory and annotation_directory a property
* Created IJBB high level interface
* Added script to display face annotations provided by a database.
* Migrate to conda based CI
* improve docs and tests
* bob.bio.spear
* v3.1.1 (Sep 22, 2017 14:48)
* bob.bio.spear!36 Docs url fixes
* minor
* pass kwargs in the base file class
* Migrate to conda based CI
* Improved docs
* bob.bio.video
* v3.3.0 (Sep 22, 2017 13:41)
* bob.bio.video!20 Docs url fix
* bob.bio.video!19 Python36 & docs fixes
* bob.bio.video!18 Removed`Algorithm.read_probe`
* minor
* Add function as_array() to FrameContainer
* Fixed youtube db load function
* The original_directory and annotation_directory are now a property
* Migrated to conda based CI
* Package now added to joint documentation
* Missing annotations are now handled in the Preprocessor Wrapper
* Updated unit tests addressing missing annotation cases
* Preprocessor Wrapper now able to return None, allowing --missing-files functionality
* Added failsafevideo wrapper
* Added Video annotator
* bob.bio.vein
* v1.0.0 (Oct 20, 2017 13:29)
* Initial release
* Added bob.db.fv3d
* Updated sample viewing script
* Added blame script
* Re-estructured Preprocessor to simplify experimentation and configuration
* Unit tests for 3D fingervein database
* Fixes to Maximum Curvature implementation; Improved references & documentation
* Speeds-up the evaluation of vein probabilities
* Updated functionality: If sample does not have ROI, then returns only image
* Updated documentation: on grid resources and explanation on how to run
* Added optional pre-cropping stage on preprocessor
* Implemented normalized-cross-correlation algorithm
* Added MLP trainer for watershed masker
* Added watershed mask detector
* Functionality allowing to view sample using a database name
* Added Miura-match with rotation support
* Support for view mode w/o extracted veins
* Added watershed preprocessing debug-aid script
* Added High Level Database Interface for putvein database
* Added the doc and tests and config for the putvein database
* HammingDistance class plus test
* Update documentation on baseline results for rlt, mc, and wld
* Remove Oleg's implementation of rotation-invariant matching
* v1.0.1 (Oct 20, 2017 16:04)
* Update `MANIFEST.in` to include necessary package files
* minor
* Ported to new CI
* Updated utfvp interface
* Fixed the index.rst to match joint docs requirements
* Adaptations to allow vulnerability analysis
* bob.db.voxforge
* v2.2.0 (Sep 24, 2017 11:39)
* minor
* Migrate to conda based CI
* Improved docs
* Removed bob_dbmanage download
* bob.pad.base
* major
* Migrate to conda based CI
* Added --allow-missing-files option
* Improved documentation
* Moved from bob.pad.face SVM (bob implementation), one class GMM (scikit-learn) and logistic regression (scikit-learn) algorithms
* Cleaned up and improved code. Added tests.
* Replace the old PAD ISO metrics class with a script
* Added clients option to FileListDB driver
* Avoids feature blow-up when std==0.
* Added predictions algorithm and padfile to label.
* bob.pad.face
* major
* Added High Level Database Interface (HLDI) for MIFS database
* Annotations are added for MIFS database
* Added a VideoSparseCoding preprocessor
* Updated the documentation on anomaly detection-based PAD using Aggregated Db
* Local face detection option was added to VideoFaceCrop class, using dlib and mtcnn
* Unit tests for the classes used in IQM-GMM pad algorithm
* Added landmark detection utils
* Algorithms/classifiers are adapted to other non-face modalities
* New protocol for Aggregated Database: grandtest-train-eval
* New protocol for Aggregated Database: grandtest-mobio
* Frame Selector is now acceptable in HLDIs of all databases
* Removed bootstrap-buildout.py functionality
* Added A base PAD file class
* New protocol for Aggregated Database: grandtest-train-eval-<num_train_samples>
* bob.extension.rc used in HLDIs
* Migrated to conda-based CI
* ALL algorithms are moved to bob.pad.base package
* Fixed algorithms documentation links, pointing to bob.pad.base now.
* The documentation of the package now linked to joint documentation properly.
* Refactoring: duplicated database configs are removed
* Refactoring: removed VideoQualityMeasure, replaced with Wrapper class
* Refactoring: removed VideoLBPHistogram, replaced with Wrapper class
* Refactoring: removed unused VideoDataLoader
* Refactoring: created FaceCropAlign, replaces ImageFaceCrop + VideFaceCrop using Wrapper
* bob.db.oulunpu
* major
* Initial release of OULU-NPU Database
* Added protocols, documentation, and tests
* Add annotation support and reorganize frame reading
* Migrated to conda based CI
* bob.db.uvad
* major
* Initial release of Unicamp Video-Attack Database
* Added protocols, documentation, and tests
* Migrated to conda based CI
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