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medai
software
mednet
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dd6c081c0e07ab5799e860e9450b8baf0debd5a4
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aifmd_dataset_support
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robertos-branch
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[data.datamodule] Experiment with fork/spawn setup
[qa] Updated pre-commit hooks
[data.datamodule] Fix warning and object setup
[tbx11k] Loads RS bounding-boxes with sample; Add tests for bounding-boxes
fixed pipeline from Commit 0a0e9529
[test/test_cli] updated unit tests for training, prediction and evaluation cli scripts. Removed radiological signs (rs) related tests
[tests] Remove tests for ptbench compare for now
[scripts.train_analysis] Simplify and remove pandas requirements
[readme,doc,pyproject,scripts] Remove traces of "tuberculosis" exclusivity
[scripts] Remove outdated scripts
[data.datamodule] Only reset datasets if model_transforms change
[scripts.experiment] Make it run completely
[scripts.experiment] Resync with changes to other scripts
[scripts] Remove outdated aggregpred and predtojson scripts and associated tests
[tests] Fix testing
[scripts.experiment] Reflect changes from evaluation; closes #44 after noticing train-analysis is performed
[doc] Documentation fixes
[scripts.evaluate] Complete refactor
[engine.predictor] Streamline typing around prediction
[engine.predictor] Do not announce tensorboard - it is useless in this stage
[scripts.predict] Reset default batch-size to 1
[doc] Documentation fixes
[script.evaluate] Improve exception message
[engine.loggers] Avoid submodule with single module inside
[engine.predictor] Allow prediction to work when batch-size!=0; Discard CSVs and use JSON for output; Implement lightning logging like in training; Separates batched (collated) data at prediction; Adapts all models to new paradigm; Remove CSVPredictionsWriter; Adapt predict script to all changes
[engine.trainer] Log at every epoch (closes #28)
[scripts] Bump to Python >= 3.10
[cli] Refactor config and database (old datamodule) commands
[manifest] Ship json from new location
[config.data] Add module initialiser
Re-shuffle datamodules to the "config" base directory, adjust tests and documentation
[doc] Remove traces of signs-to-tb "model"
[tests] Remove traces of signs-to-tb "model"
[models] Improve documentation of config files; Make ptbench config work again
[tests] Minimal tests for the combined NIH-CXR14 and PadChest database remix
[tests] Setup minimal testing for nih-cxr14 database
[tests] Setup minimal padchest testing (c.f. issue #41)
[tests] Implement tests for montgomery_shenzhen_indian_padchest
[data.montgomery_shenzhen_indian_tbx11k] Fix v2-fold-0
[tests] Implement tests for some remix datasets
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