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Created with Raphaël 2.2.022Jan191722Dec141319Sep518Aug17161514865432131Jul3028272643129Jun28272219141365131May242216151211109818Apr17161514121164322Mar2119181716872128Feb2322161330Jan292726252423[config.data] Fix module nameFix module name data.config -> config.dataRename package from ptbench -> mednet (closes #46)[scripts.experiment] Removed unused required parameter[gitignore] Ignore folders that start with "results"[data.augmentations] Re-enable within-batch parallelisation of elastic deformation[doc] Add missing docstring parameters and returns[tests] Add missing cli testMerge branch 'add-datamodule-gradcam' into 'main'[typing] Use typing_extensions.Self[doc] Comment out unused reference[doc] Documentation fixesDo not use lightning 2.1.3[tests] Fix saliency testsMoved computation of binary mask to its own function[engine.saliency.viewer] Fix use of heatmap from matplotlib[tests.test_transforms] Rename to fix typo[engine.saliency.evaluator] Fix evaluation strategy after interpretability module simplifications[pyproject,conda] Add scikit-image dependence[scripts] Streamline saliency map generation and analysis[scripts.saliency] Re-structure CLI to make it more consistent with submodule organisation[scripts.view_saliency] New viewer implementation based on pillow and matplotlib instead of opencv[scripts.saliency_interpretability] Allow user to explicitly define target to be analysed[engine.saliency.interpretability] Allow user to explicitly define target to be analysed[various] Remove outdated files[scripts.saliency_completeness] Improve cli docs[scripts.generate_saliencymaps] Improve cli docs[engine.callbacks] Refactor callbacks to delegate most work to lightning[pyproject,conda] Remove dependencies to opencv and pandas[data.augmentations] Temporarily disables within-batch parallelisation of elastic deformation (mitigates #53)[utils.checkpointer] Refactor checkpoint saving and loading[pyproject] Relax constraints back again; Closes #31[tests.test_tbx11k] Fix test after bounding-box type fix[config.data.tbx11k.datamodule] Re-define bounding-box containers for better pytorch integration[conda,python] Pin lightning to <2.1.0[scripts] Fix usage docs[scripts.generate_saliencymaps] Fix usage docs[config.data.nih_cxr14.datamodule] Fix loading of RGBA-encoded images (closes #51)[doc] Update installation instructions to include (mamba) pytorch-gpu installation tips[scripts.evaluate_saliencymaps] Add script and functionality