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Created with Raphaël 2.2.015Aug14865432131Jul3028272622Jun22May16151211109818Apr17161514121164322Mar2119181716872128Feb2322161330Jan292726252423[scripts.predict] Reset default batch-size to 1[doc] Documentation fixes[script.evaluate] Improve exception message[engine.loggers] Avoid submodule with single module inside[engine.predictor] Allow prediction to work when batch-size!=0; Discard CSVs and use JSON for output; Implement lightning logging like in training; Separates batched (collated) data at prediction; Adapts all models to new paradigm; Remove CSVPredictionsWriter; Adapt predict script to all changes[engine.trainer] Log at every epoch (closes #28)[scripts] Bump to Python >= 3.10[cli] Refactor config and database (old datamodule) commands[manifest] Ship json from new location[config.data] Add module initialiserRe-shuffle datamodules to the "config" base directory, adjust tests and documentation[doc] Remove traces of signs-to-tb "model"[tests] Remove traces of signs-to-tb "model"[models] Improve documentation of config files; Make ptbench config work again[tests] Minimal tests for the combined NIH-CXR14 and PadChest database remix[tests] Setup minimal testing for nih-cxr14 database[tests] Setup minimal padchest testing (c.f. issue #41)[tests] Implement tests for montgomery_shenzhen_indian_padchest[data.montgomery_shenzhen_indian_tbx11k] Fix v2-fold-0[tests] Implement tests for some remix datasets[tests] Fix imports[doc] Make it pass[models.config] Make preset configurations location independent[pyproject] Upper pin pydantic until issue #31 is fixed[data.image_utils] Remove unused code[configs.models_datasets] Delete, move densenet-rs to models directory; Update some of the docs[tests.test_nih_cxr14] Adapt to new datamodule syntax[tests.test_image_utils] Update to support new structure[tests.conftest] Prepare helpers for multi-class database support[data.nih_cxr14] Update documentation with protocol details[tests] Rewrite tests for hiv-tb and tb-poc[qa] Minor fixMerge branch 'update-tbpoc' into 'add-datamodule'[data.tbpoc] Minor adjustmentsMerge branch 'update-hivtb' into 'add-datamodule'[data.hivtb] Minor adjustments[tests] Revamp tests for montgomery, shenzhen, indian, and tbx11k; Erase tests for outdated RS modulesupdated TB-POC dataset and corresponding testsupdated HIV-TB dataset and related tests[tests/test_montgomery] More detailed module testing