Commits · d75f924dcf6bf11dc109572e002cb51ca6cf09a4 · medai / software / mednet · GitLab

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Jul 01, 2024
- [segmentation] Apply augmentation transforms · d75f924d
  Daniel CARRON authored 8 months ago and André Anjos committed 8 months ago
  
  d75f924d
- [segmentation.scripts] Add upload script · e4a0b7e2
  Daniel CARRON authored 8 months ago and André Anjos committed 8 months ago
  
  e4a0b7e2
- [segmentation.data.typing] Define sample data as a TypedDict · 50bff62a
  Daniel CARRON authored 8 months ago and André Anjos committed 8 months ago
  
  50bff62a
- [common.engine.callbacks] Get lr from optimizer if no scheduler defined · e0f87834
  Daniel CARRON authored 8 months ago and André Anjos committed 8 months ago
  
  e0f87834
- [models] Add support for learning rate schedulers · 993945b7
  Daniel CARRON authored 8 months ago and André Anjos committed 8 months ago
  
  993945b7
- [segmentation.engine.dumper] Fix sample indexing · a3cc8884
  Daniel CARRON authored 8 months ago and André Anjos committed 8 months ago
  
  a3cc8884
- [models] Move repeated functions into specialized models · 38d54072
  Daniel CARRON authored 8 months ago and André Anjos committed 8 months ago
  
  38d54072
- [doc] Add new models to doc · d3511abe
  Daniel CARRON authored 8 months ago and André Anjos committed 8 months ago
  
  d3511abe
- [models] Create specialized model per library · 5ccbe6d6
  Daniel CARRON authored 8 months ago and André Anjos committed 8 months ago
  
  5ccbe6d6
- [normalizer] Do not call to super().set_normalizer() as it was moved · 145e8f74
  Daniel CARRON authored 8 months ago and André Anjos committed 8 months ago
  
  145e8f74
- [typing] Redefine Sample type in each lib · eb4848f6
  Daniel CARRON authored 8 months ago and André Anjos committed 8 months ago
  
  eb4848f6
- [datamodule] More generic sample size computation · a16730af
  Daniel CARRON authored 8 months ago and André Anjos committed 8 months ago
  
  a16730af
- [doc] Update doc · 6f2b1a75
  Daniel CARRON authored 8 months ago and André Anjos committed 8 months ago
  
  6f2b1a75
- [tests] Update tests · b42c68f9
  Daniel CARRON authored 8 months ago and André Anjos committed 8 months ago
  
  b42c68f9
- [common.database] Hotfix for database check command · bdd78673
  Daniel CARRON authored 8 months ago and André Anjos committed 8 months ago
  
  bdd78673
- [segmentation.predict] Make prediction work with new samples · 7e66943c
  Daniel CARRON authored 8 months ago and André Anjos committed 8 months ago
  
  7e66943c
- [common] Hotfixes to make code work with both types of samples · 411a9285
  Daniel CARRON authored 8 months ago and André Anjos committed 8 months ago
  
  411a9285
- [segmentation.models] Update models to handle updated samples · a12a332a
  Daniel CARRON authored 8 months ago and André Anjos committed 8 months ago
  
  a12a332a
- [segmentation.datamodule] Make sample() return two dicts · f142d968
  Daniel CARRON authored 8 months ago and André Anjos committed 8 months ago
  
  f142d968
- [normalizer] Move normalizer out of common package and inside libs · da13b5b0
  Daniel CARRON authored 8 months ago and André Anjos committed 8 months ago
  
  da13b5b0
- [libs.segmentation.scripts.evaluate] Implement 2nd. annotator analysis · 2bc38491
  André Anjos authored 8 months ago
  
  2bc38491
- [libs.segmentation.engine.evaluator] Fix doc strings · 1c1600a8
  André Anjos authored 8 months ago
  
  1c1600a8
- [libs.segmentation.scripts.evaluate] Major clean-up · 40aa5aba
  André Anjos authored 8 months ago
  
  40aa5aba
- [libs.segmentation.scripts.evaluate] Fix unreachable code · 4eb47d19
  André Anjos authored 8 months ago
  
  4eb47d19
- [libs.common.scripts.utils] Fix typing · aa2abdaf
  André Anjos authored 8 months ago
  
  aa2abdaf
- [various] Simplify testing, metadata saving, json data saving · 01daf20f
  André Anjos authored 8 months ago
  
  01daf20f
- [tests.classification] Streamline testing · 946e86f5
  André Anjos authored 8 months ago
  
  946e86f5
- [tests] Separate test output folders · bd4d1f75
  André Anjos authored 8 months ago
  
  bd4d1f75
- [libs.common.scripts.utils] Give more options to fix version warning · c2483554
  André Anjos authored 8 months ago
  
  c2483554
- [doc] Remove pandas dep · 62367dc4
  André Anjos authored 8 months ago
  
  62367dc4
- [libs.segmentation.scripts.dump_annotations] Implement routine to dump... · 61324bd9
  André Anjos authored 8 months ago
  
  [libs.segmentation.scripts.dump_annotations] Implement routine to dump annotations from an arbitrary datamodule
  61324bd9
- [libs.segmentation.engine.predictor] Fix documentation · 692a1be6
  André Anjos authored 8 months ago
  
  692a1be6
- [various] Use __name__ to obtain appropriate logger · e5f0b7ac
  André Anjos authored 8 months ago
  
  e5f0b7ac
- [libs.common.scripts.train_analysis] Fix example docs · 54edff16
  André Anjos authored 8 months ago
  
  54edff16
- [libs.segmentation.scripts.predict] Fix printout · 273ddc75
  André Anjos authored 8 months ago
  
  273ddc75
- [tests] Fix paths · 15b88354
  Daniel CARRON authored 8 months ago and André Anjos committed 8 months ago
  
  15b88354
- [tests.segmentation] Fix expected JSON filename · 906c0a36
  André Anjos authored 8 months ago
  
  906c0a36
- [lib.segmentation.scripts.predict] Fix test expectations · 2ee2f060
  André Anjos authored 8 months ago
  
  2ee2f060
- [doc] Fix removed modules · e5eea112
  André Anjos authored 8 months ago
  
  e5eea112
- [libs.common.models.model] Fix typing errors · e016b365
  André Anjos authored 8 months ago
  
  e016b365