Commits · d07d3970ed7acec0d125fba5425fd92bfc313123 · medai / software / mednet

Dec 11, 2023
- [pyproject] Relax constraints back again; Closes #31 · d07d3970
  André Anjos authored 1 year ago
  
  d07d3970
Oct 30, 2023
- [tests.test_tbx11k] Fix test after bounding-box type fix · f7c77a2d
  André Anjos authored 1 year ago
  
  f7c77a2d
- [config.data.tbx11k.datamodule] Re-define bounding-box containers for better pytorch integration · 299ba9ad
  André Anjos authored 1 year ago
  
  299ba9ad
Oct 24, 2023
- [conda,python] Pin lightning to <2.1.0 · c0114591
  André Anjos authored 1 year ago
  
  c0114591
- [scripts] Fix usage docs · 582831ac
  André Anjos authored 1 year ago
  
  582831ac
- [scripts.generate_saliencymaps] Fix usage docs · 1b27a248
  André Anjos authored 1 year ago
  
  1b27a248
- [config.data.nih_cxr14.datamodule] Fix loading of RGBA-encoded images (closes #51 ) · 3665101d
  André Anjos authored 1 year ago
  
  3665101d
- [doc] Update installation instructions to include (mamba) pytorch-gpu installation tips · f70bb3bb
  André Anjos authored 1 year ago
  
  f70bb3bb
Oct 19, 2023
- [scripts.evaluate_saliencymaps] Add script and functionality · 3c8ad08c
  André Anjos authored 1 year ago
  
  3c8ad08c
- Documentation fixes · 8bc19e14
  André Anjos authored 1 year ago
  
  8bc19e14
Oct 13, 2023
- [scripts.train] Improve documentation · edf9ca49
  André Anjos authored 1 year ago
  
  edf9ca49
Oct 11, 2023
- [engine.saliency.completeness] Implement multiprocessing · 751ccbe0
  André Anjos authored 1 year ago
  
  751ccbe0
Oct 10, 2023
- [engine.saliency] Fix imports · 84e5b5a8
  André Anjos authored 1 year ago
  
  84e5b5a8
- Rename and relocate scripts into modules · 9944dde7
  André Anjos authored 1 year ago
  
  9944dde7
Oct 09, 2023
- [engine/saliencymap_generator] Improve comments on code · 15567828
  André Anjos authored 1 year ago
  
  15567828
Oct 07, 2023
- [saliencymap_evaluator] Improve TODO comments with more ideas · 6d55bba1
  André Anjos authored 1 year ago
  
  6d55bba1
Oct 06, 2023
- [saliencymap_evaluator] Reimplements interpretability evaluator to simplify... · e6547934
  André Anjos authored 1 year ago
  
  [saliencymap_evaluator] Reimplements interpretability evaluator to simplify code, be less dependent on opencv, improve documentation, and improve type hinting
  e6547934
- [saliencymap_generator] Save maps directly · 128b7b70
  André Anjos authored 1 year ago
  
  128b7b70
Oct 05, 2023
- [ignore] Add results/ directory · d7a3c159
  André Anjos authored 1 year ago
  
  d7a3c159
Oct 04, 2023
- [doc] Fix docs of generate-saliencymaps · e3a8575b
  André Anjos authored 1 year ago
  
  e3a8575b
- [engine,scripts] Simplify saliencymap generator; Add more type hinting; Make... · 3920e964
  André Anjos authored 1 year ago
  
  [engine,scripts] Simplify saliencymap generator; Add more type hinting; Make it TB-agnostic; Closes #49
  3920e964
- [models] Report number of classes supported · 8844778e
  André Anjos authored 1 year ago
  
  8844778e
Oct 03, 2023
- [ci] Simplify and annotate with comments · f2c96f6c
  André Anjos authored 1 year ago
  
  f2c96f6c
- [ci] Install libGL for tests and documentation · 96f7a00d
  André Anjos authored 1 year ago
  
  96f7a00d
- [pyproject,conda] Update dependencies · 9e5b881e
  André Anjos authored 1 year ago
  
  9e5b881e
Sep 26, 2023
- fixed target layer selection for densnet models · f46aad74
  ogueler@idiap.ch authored 1 year ago
  
  f46aad74
Sep 21, 2023
- added dependancies · 19e6e492
  ogueler@idiap.ch authored 1 year ago
  
  19e6e492
- fixed formatting · 4f0a387f
  ogueler@idiap.ch authored 1 year ago
  
  4f0a387f
- fixed tests · 35765013
  ogueler@idiap.ch authored 1 year ago
  
  35765013
- fixed and renamed comparevis · f328246e
  ogueler@idiap.ch authored 1 year ago
  
  f328246e
Sep 20, 2023
- removed reliance on image directory · c96f2af4
  ogueler@idiap.ch authored 1 year ago
  
  c96f2af4
Sep 19, 2023
- fixed formatting · 01d43650
  ogueler@idiap.ch authored 1 year ago
  
  01d43650
- added saliency map evaluation and visualisation for lightning models · 09bee243
  ogueler@idiap.ch authored 1 year ago
  
  09bee243
- Merge branch 'add-datamodule' of gitlab.idiap.ch:biosignal/software/ptbench... · 2eeb0c14
  ogueler@idiap.ch authored 1 year ago
  
  Merge branch 'add-datamodule' of gitlab.idiap.ch:biosignal/software/ptbench into add-datamodule-gradcam
  2eeb0c14
- changed sample naming · 6621ede5
  ogueler@idiap.ch authored 1 year ago
  
  6621ede5
- Revert "[data.datamodule] Experiment with fork/spawn setup" · 695e7029
  André Anjos authored 1 year ago
  
  This reverts commit 20dfcdb4.
  695e7029
- [data.datamodule] Experiment with fork/spawn setup · 20dfcdb4
  André Anjos authored 1 year ago
  
  20dfcdb4
- [qa] Updated pre-commit hooks · 02bf1be7
  André Anjos authored 1 year ago
  
  02bf1be7
- [data.datamodule] Fix warning and object setup · 690bd155
  André Anjos authored 1 year ago
  
  690bd155
- [tbx11k] Loads RS bounding-boxes with sample; Add tests for bounding-boxes · 21fc141d
  André Anjos authored 1 year ago
  
  21fc141d