Commits · 88dd9259746fdb474871bf282c011dcef3a13069 · medai / software / mednet

May 03, 2024
- [doc] Add base Model to documentation · 88dd9259
  Daniel CARRON authored 10 months ago
  
  88dd9259
- [model] Model takes loss type and arguments during instanciation · ea69e431
  Daniel CARRON authored 10 months ago
  
  ea69e431
- [model] Fix balancing of multiclass targets · 1f0e3938
  Daniel CARRON authored 10 months ago
  
  1f0e3938
- [tests] Update cli tests · b32ebbe5
  Daniel CARRON authored 10 months ago
  
  b32ebbe5
- [train] Add support for multiple validation dataloaders · 222a3762
  Daniel CARRON authored 10 months ago
  
  During validation logging, lightning seems to append "/dataloader_idx_n" to the key we define if multiple dataloaders are used.
  222a3762
- [train] Use loss balancing instead of sampler balancing · 51b5d6f7
  Daniel CARRON authored 10 months ago
  
  This currently only supports a single validation dataloader
  51b5d6f7
- [model] Use base model · 5fae86b8
  Daniel CARRON authored 10 months ago
  
  5fae86b8
- [model] Create base Model class · 21937fb2
  Daniel CARRON authored 10 months ago
  
  21937fb2
May 02, 2024
- Merge branch 'add-dockerfile' into 'main' · 9d570ed0
  André Anjos authored 10 months ago
  
  Add dockerfile See merge request biosignal/software/mednet!37
  9d570ed0
- [doc] Fix config · 34f8bddb
  André Anjos authored 10 months ago
  
  34f8bddb
- [precommit] Remove author · 488272f4
  André Anjos authored 10 months ago
  
  488272f4
- [dockerfile] Fix environment copy · 8605b34f
  André Anjos authored 10 months ago
  
  8605b34f
- [dockerfile] No need to run pixi info · cef9822f
  André Anjos authored 10 months ago
  
  cef9822f
- [dockerfile] Use different endpoint for entrypoint script · 6666960c
  André Anjos authored 10 months ago
  
  6666960c
- [pixi] Update lockfile · bb30bf45
  André Anjos authored 10 months ago
  
  bb30bf45
- [dockerfile] Install pip and properly configure pixi · 6dee14ef
  André Anjos authored 10 months ago
  
  6dee14ef
- [dockerfile] Try a different strategy for wheel installation · c6616d21
  André Anjos authored 10 months ago
  
  c6616d21
- [dockerfile] Try to build using a pixi ready-made image · 0cb71e06
  André Anjos authored 10 months ago
  
  0cb71e06
- [pyproject] Do not install cuda runtime (expect it on the host machine) · 4d523d36
  André Anjos authored 10 months ago
  
  4d523d36
- [dockerfile] Use CUDA runtime image · 09002392
  André Anjos authored 10 months ago
  
  09002392
- [dockerfile] Use CUDA base image · a4232d95
  André Anjos authored 10 months ago
  
  a4232d95
- [dockerfile] Improve base prototype · 4f685873
  André Anjos authored 10 months ago
  
  4f685873
- [pixi] Simplify cuda setup for users · a20007d8
  André Anjos authored 10 months ago
  
  a20007d8
- [dockerfile] Add prototype · 51151c0b
  André Anjos authored 10 months ago
  
  51151c0b
- [scripts.utils] Sort dependence names · 94313ec4
  André Anjos authored 10 months ago
  
  94313ec4
May 01, 2024
- Merge branch 'experiment-upload' into 'main' · e864ad72
  André Anjos authored 10 months ago
  
  Experiment and model upload to GitLab via MLflow interface See merge request biosignal/software/mednet!31
  e864ad72
- [doc] Add a note about direnv usage · dff1b8cf
  André Anjos authored 10 months ago
  
  dff1b8cf
- [scripts.upload] Make uploaded data a bit more obvious; Report size of... · fb218b8d
  André Anjos authored 10 months ago
  
  [scripts.upload] Make uploaded data a bit more obvious; Report size of uploaded material; Report URL of uploaded model/experiment; Move gitlab functions to dedicated module; Document dedicated module; Fix QA
  fb218b8d
- [pre-commit] Update plugins · 5d0b939a
  André Anjos authored 10 months ago
  
  5d0b939a
- [pixi] Update lockfile with latest changes on environments · d4f63f9e
  André Anjos authored 10 months ago
  
  d4f63f9e
- Remove try/catch block for auth, no need it #60 . · 81c1976a
  Gokhan OZBULAK authored 10 months ago and André Anjos committed 10 months ago
  
  81c1976a
- File limit flag is added #60 . · 74004ef1
  Gokhan OZBULAK authored 10 months ago and André Anjos committed 10 months ago
  
  74004ef1
- Add auth check before start uploading. · 505a1690
  Gokhan OZBULAK authored 10 months ago and André Anjos committed 10 months ago
  
  505a1690
- Import modules when necessary #60 . · 2342783d
  Gokhan OZBULAK authored 10 months ago and André Anjos committed 10 months ago
  
  2342783d
- Delete temp model file after it's done #60 . · 6c90cee3
  Gokhan OZBULAK authored 10 months ago and André Anjos committed 10 months ago
  
  6c90cee3
- Swithcing to lightweight package for MLFlow #60 . · 8d2bacb7
  Gokhan OZBULAK authored 10 months ago and André Anjos committed 10 months ago
  
  8d2bacb7
- [test] Update paths · aa7d5a67
  Daniel CARRON authored 10 months ago and André Anjos committed 10 months ago
  
  aa7d5a67
- [results] Hardcode trainlog and evaluation file names · 0e198fc4
  Daniel CARRON authored 10 months ago and André Anjos committed 10 months ago
  
  0e198fc4
- Change flag for experiment path for better intuition. #60 · 014bcf0b
  Gokhan OZBULAK authored 11 months ago and André Anjos committed 10 months ago
  
  014bcf0b
- Make function names private and more clear, #60 · 1a40cff4
  Gokhan OZBULAK authored 11 months ago and André Anjos committed 10 months ago
  
  1a40cff4