Commits · 45798b26c68f88e4e22ac0e769900042e9356852 · medai / software / mednet · GitLab

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Oct 02, 2024
- Merge branch 'pytorch-2.4.x' into 'main' · 45798b26
  André Anjos authored 5 months ago
  
  Relax numpy/pytorch constraints See merge request biosignal/software/mednet!65
  45798b26
- [tests.data] Update elastic deformation reference after changes to RNG in transform · 98c80e4c
  André Anjos authored 5 months ago
  
  98c80e4c
- [pyproject] Relax numpy/pytorch constraints · e0ab5b3d
  André Anjos authored 5 months ago
  
  e0ab5b3d
Oct 01, 2024
- Merge branch 'add-detection' into 'main' · 9bb7c8d8
  André Anjos authored 5 months ago
  
  Add object detection See merge request biosignal/software/mednet!64
  9bb7c8d8
- [tests.detect] Implement basic tests for object detection evaluator · dbcf2c66
  André Anjos authored 5 months ago
  
  dbcf2c66
Sep 30, 2024
- [scripts.config] Adapt to verbosity being eager · e77f58bb
  André Anjos authored 5 months ago
  
  e77f58bb
- [doc] Add object detection · 5f1c86d1
  André Anjos authored 5 months ago
  
  5f1c86d1
- [pyproject] Add color logging; Provide version command · 74b5c670
  André Anjos authored 5 months ago
  
  74b5c670
Sep 28, 2024
- [pyproject] Pin clapper; Remove pixi system-requirements (default is fine) · 3436028f
  André Anjos authored 5 months ago
  
  3436028f
Sep 22, 2024
- [pyproject] Do not set MEDNET_DEVICE · b35d2e00
  André Anjos authored 5 months ago
  
  b35d2e00
Sep 21, 2024
- [detect] Implement prediction, evaluation and minimal testing · 64f3a314
  André Anjos authored 5 months ago
  
  64f3a314
Sep 20, 2024
- [models.classify] Replace model_ft -> model · a9f7865a
  André Anjos authored 5 months ago
  
  a9f7865a
Sep 19, 2024
- [models] Fix setup of normalizer · a504c37c
  André Anjos authored 5 months ago
  
  a504c37c
Sep 17, 2024
- [tests.detect] Add basic dataset tests for detection module · c648dfd6
  André Anjos authored 5 months ago
  
  c648dfd6
- [helpers] Add generation of histograms for detection bit · 9ee6c65d
  André Anjos authored 5 months ago
  
  9ee6c65d
- [data.segment.cxr8] Fixes mask loading · 638e4b7d
  André Anjos authored 5 months ago
  
  638e4b7d
- [config.detect.data] Fix docs · 61bba3de
  André Anjos authored 5 months ago
  
  61bba3de
- [data.segment.shenzhen] Do not need to crop image to mask · 8504a5f8
  André Anjos authored 5 months ago
  
  8504a5f8
- [data.segment] Shape mask based on image as targets can change on inherited classes · a604975e
  André Anjos authored 5 months ago
  
  a604975e
- [tests.segment] Fix config-name for database checks · ef8357ee
  André Anjos authored 5 months ago
  
  ef8357ee
- Streamlined normalization setup/reload from checkpoint on models · bba188be
  André Anjos authored 5 months ago
  
  bba188be
Sep 13, 2024
- Address normalizer usage and checkpointing to avoid runtime checks · 6f3fc629
  André Anjos authored 5 months ago
  
  6f3fc629
Sep 12, 2024
- [doc] Remove unused reference · c83c2c68
  André Anjos authored 5 months ago
  
  c83c2c68
- Fix tests · 8d306018
  André Anjos authored 5 months ago
  
  8d306018
Sep 11, 2024
- Training for FasterRCNN is now running · d3bed3fa
  André Anjos authored 6 months ago
  
  d3bed3fa
- [data.classify,data.segment] Report number of classes on datamodule · 0182fbb6
  André Anjos authored 6 months ago
  
  0182fbb6
- [tests.test_transforms] Test TV v2 API · 352b3461
  André Anjos authored 6 months ago
  
  352b3461
- [pixi] Minor env update · 8d7b62b0
  André Anjos authored 6 months ago
  
  8d7b62b0
Sep 10, 2024
- [config.detect.data] Add preliminary configurations · 749e9f0d
  André Anjos authored 6 months ago
  
  749e9f0d
- [config] Add top-level module docstrings · 9eab6d72
  André Anjos authored 6 months ago
  
  9eab6d72
- [models.detect] Add basic implementation for Faster R-CNN · e5e02448
  André Anjos authored 6 months ago
  
  e5e02448
- [models.segment] Log message improvements · 00f46d86
  André Anjos authored 6 months ago
  
  00f46d86
- [models.classify] Fix alexnet pre-trained init; Log message improvements · 68ef7bae
  André Anjos authored 6 months ago
  
  68ef7bae
- [data.detect.cxr8] Add database · b88e9cac
  André Anjos authored 6 months ago
  
  b88e9cac
- [data.detect] Fix multiple docstrings · a60e69da
  André Anjos authored 6 months ago
  
  a60e69da
- [tests.test_dataset] Fix import · ed7d9903
  André Anjos authored 6 months ago
  
  ed7d9903
- [data] add object detection databases for lung · 13805c61
  André Anjos authored 6 months ago
  
  13805c61
- [data] Homogenize raw-data loaders · 689264ce
  André Anjos authored 6 months ago
  
  689264ce
- [tests.classify.test_tbx11k] Fix bounding-box tests (closes #36 ) · 63691207
  André Anjos authored 6 months ago
  
  63691207
- [doc] Remove optimizer_step from doc/extras; Better annotate exceptions (closes #3 ) · 63b38b5a
  André Anjos authored 6 months ago
  
  63b38b5a