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medai
software
mednet
Commits
f3e0b8c9
Commit
f3e0b8c9
authored
1 year ago
by
André Anjos
Committed by
Daniel CARRON
1 year ago
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[doc] Fix docs of generate-saliencymaps
parent
2a7150d6
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!12
Adds grad-cam support on classifiers
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src/ptbench/scripts/click.py
+1
-1
1 addition, 1 deletion
src/ptbench/scripts/click.py
src/ptbench/scripts/generate_saliencymaps.py
+7
-8
7 additions, 8 deletions
src/ptbench/scripts/generate_saliencymaps.py
with
8 additions
and
9 deletions
src/ptbench/scripts/click.py
+
1
−
1
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f3e0b8c9
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@@ -27,4 +27,4 @@ class ConfigCommand(_BaseConfigCommand):
...
@@ -27,4 +27,4 @@ class ConfigCommand(_BaseConfigCommand):
if
self
.
epilog
:
if
self
.
epilog
:
formatter
.
write_paragraph
()
formatter
.
write_paragraph
()
for
line
in
self
.
epilog
.
split
(
"
\n
"
):
for
line
in
self
.
epilog
.
split
(
"
\n
"
):
formatter
.
write
_text
(
line
)
formatter
.
write
(
line
+
"
\n
"
)
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src/ptbench/scripts/generate_saliencymaps.py
+
7
−
8
View file @
f3e0b8c9
...
@@ -7,10 +7,11 @@ import typing
...
@@ -7,10 +7,11 @@ import typing
import
click
import
click
from
clapper.click
import
ConfigCommand
,
ResourceOption
,
verbosity_option
from
clapper.click
import
ResourceOption
,
verbosity_option
from
clapper.logging
import
setup
from
clapper.logging
import
setup
from
..models.typing
import
VisualisationType
from
..models.typing
import
VisualisationType
from
.click
import
ConfigCommand
logger
=
setup
(
__name__
.
split
(
"
.
"
)[
0
],
format
=
"
%(levelname)s: %(message)s
"
)
logger
=
setup
(
__name__
.
split
(
"
.
"
)[
0
],
format
=
"
%(levelname)s: %(message)s
"
)
...
@@ -20,15 +21,13 @@ logger = setup(__name__.split(".")[0], format="%(levelname)s: %(message)s")
...
@@ -20,15 +21,13 @@ logger = setup(__name__.split(".")[0], format="%(levelname)s: %(message)s")
cls
=
ConfigCommand
,
cls
=
ConfigCommand
,
epilog
=
"""
Examples:
epilog
=
"""
Examples:
\b
1. Generates saliency maps for all prediction dataloaders on a datamodule,
1. Generates saliency maps for all prediction dataloaders on a datamodule,
using a pre-trained DenseNet model, and saves them as numpy-pickeled
using a pre-trained DenseNet model, and saves them as numpy-pickeled
objects on the output directory:
objects on the output directory:
.. code:: sh
.. code:: sh
\b
ptbench generate-saliencymaps -vv densenet tbx11k-v1-healthy-vs-atb --weight=path/to/model_final.pth --output-folder=path/to/visualisations
ptbench generate-saliencymaps -vv densenet tbx11k-v1-healthy-vs-atb --weight=path/to/model_final.pth --output-folder=path/to/visualisations
"""
,
"""
,
)
)
...
...
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