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medai
software
mednet
Commits
84c3a5f7
Commit
84c3a5f7
authored
1 year ago
by
André Anjos
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[pyproject] Format with taplo
parent
6bfb3ac1
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1 merge request
!6
Making use of LightningDataModule and simplification of data loading
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pyproject.toml
+26
-36
26 additions, 36 deletions
pyproject.toml
with
26 additions
and
36 deletions
pyproject.toml
+
26
−
36
View file @
84c3a5f7
...
@@ -3,8 +3,8 @@
...
@@ -3,8 +3,8 @@
# SPDX-License-Identifier: GPL-3.0-or-later
# SPDX-License-Identifier: GPL-3.0-or-later
[build-system]
[build-system]
requires
=
["setuptools>
=
61.0
.
0
", "
wheel
"]
requires
=
["setuptools>
=
61.0
.
0
", "
wheel
"]
build-backend
=
"setuptools.build_meta"
build-backend
=
"setuptools.build_meta"
[project]
[project]
name
=
"ptbench"
name
=
"ptbench"
...
@@ -12,13 +12,11 @@ version = "1.0.0b0"
...
@@ -12,13 +12,11 @@ version = "1.0.0b0"
requires-python
=
">
=
3.10
"
requires-python
=
">
=
3.10
"
description
=
"Benchmarks for training and evaluating deep models for the detection of active Pulmonary Tuberculosis from Chest X-Ray imaging."
description
=
"Benchmarks for training and evaluating deep models for the detection of active Pulmonary Tuberculosis from Chest X-Ray imaging."
dynamic
=
[
"readme"
]
dynamic
=
[
"readme"
]
license
=
{
text
=
"GNU General Public License v3 (GPLv3)"
}
license
=
{
text
=
"GNU General Public License v3 (GPLv3)"
}
authors
=
[
authors
=
[
{
name
=
"Geoffrey Raposo"
,
email
=
"geoffrey@raposo.ch"
}
]
{name
=
"Geoffrey Raposo"
,
email
=
"geoffrey@raposo.ch"
}
]
maintainers
=
[
maintainers
=
[
{name
=
"Andre Anjos"
,
email
=
"andre.anjos@idiap.ch"
}
,
{
name
=
"Andre Anjos"
,
email
=
"andre.anjos@idiap.ch"
}
,
{name
=
"Daniel Carron"
,
email
=
"daniel.carron@idiap.ch"
}
{
name
=
"Daniel Carron"
,
email
=
"daniel.carron@idiap.ch"
}
,
]
]
classifiers
=
[
classifiers
=
[
"Development Status :: 4 - Beta"
,
"Development Status :: 4 - Beta"
,
...
@@ -29,21 +27,21 @@ classifiers = [
...
@@ -29,21 +27,21 @@ classifiers = [
"Topic :: Software Development :: Libraries :: Python Modules"
,
"Topic :: Software Development :: Libraries :: Python Modules"
,
]
]
dependencies
=
[
dependencies
=
[
"clapper"
,
"clapper"
,
"click"
,
"click"
,
"numpy"
,
"numpy"
,
"pandas"
,
"pandas"
,
"scipy"
,
"scipy"
,
"scikit-learn"
,
"scikit-learn"
,
"tqdm"
,
"tqdm"
,
"psutil"
,
"psutil"
,
"tabulate"
,
"tabulate"
,
"matplotlib"
,
"matplotlib"
,
"pillow"
,
"pillow"
,
"torch>
=
1.8
",
"torch>
=
1.8
",
"torchvision>
=
0.10
",
"torchvision>
=
0.10
",
"lightning>
=
2.0
.
3
",
"lightning>
=
2.0
.
3
",
"tensorboard"
,
"tensorboard"
,
]
]
[project.urls]
[project.urls]
...
@@ -62,12 +60,8 @@ doc = [
...
@@ -62,12 +60,8 @@ doc = [
"sphinx-copybutton"
,
"sphinx-copybutton"
,
"sphinx-inline-tabs"
,
"sphinx-inline-tabs"
,
"sphinx-click"
,
"sphinx-click"
,
]
]
test
=
[
test
=
[
"pytest"
,
"pytest-cov"
,
"coverage"
]
"pytest"
,
"pytest-cov"
,
"coverage"
,
]
[project.scripts]
[project.scripts]
ptbench
=
"ptbench.scripts.cli:cli"
ptbench
=
"ptbench.scripts.cli:cli"
...
@@ -487,10 +481,10 @@ padchest_tb_idiap_rs = "ptbench.configs.datasets.padchest_RS.tb_idiap"
...
@@ -487,10 +481,10 @@ padchest_tb_idiap_rs = "ptbench.configs.datasets.padchest_RS.tb_idiap"
[tool.setuptools]
[tool.setuptools]
zip-safe
=
true
zip-safe
=
true
package-dir
=
{
""
=
"src"
}
package-dir
=
{
""
=
"src"
}
[tool.setuptools.dynamic]
[tool.setuptools.dynamic]
readme
=
{
file
=
"README.md"
}
readme
=
{
file
=
"README.md"
}
[tool.distutils.bdist_wheel]
[tool.distutils.bdist_wheel]
universal
=
true
universal
=
true
...
@@ -505,10 +499,6 @@ lines_between_types = 1
...
@@ -505,10 +499,6 @@ lines_between_types = 1
line-length
=
80
line-length
=
80
[tool.pytest.ini_options]
[tool.pytest.ini_options]
addopts
=
[
addopts
=
["--cov
=
ptbench
", "
--cov-report
=
term-missing
", "
--import-mode
=
append
"]
"--cov
=
ptbench
",
"--cov-report
=
term-missing
",
"--import-mode
=
append
",
]
junit_logging
=
"all"
junit_logging
=
"all"
junit_log_passing_tests
=
false
junit_log_passing_tests
=
false
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