[pre-commit] Update and add further rules; clean-up

.gitignore

@@ -5,7 +5,6 @@
 *~
 *.swp
 *.pyc
-*.egg-info
 .nfs*
 .coverage*
 *.DS_Store
@@ -14,15 +13,12 @@ coverage.xml
 test_results.xml
 junit-coverage.xml
 html/
-build/
 doc/api/
 dist/
 cache/
-_citools/
-_work/
 .mypy_cache/
 .pytest_cache/
-results*/
 *_version.py
 .venv
 .pixi
+results*/

.pre-commit-config.yaml

@@ -6,7 +6,7 @@
 # See https://pre-commit.com/hooks.html for more hooks
 repos:
   - repo: https://github.com/astral-sh/ruff-pre-commit
-    rev: v0.4.2
+    rev: v0.4.3
     hooks:
       - id: ruff
         args: [ --fix ]
@@ -20,11 +20,11 @@ repos:
     hooks:
     - id: mypy
       args: [ --install-types, --non-interactive, --no-strict-optional, --ignore-missing-imports ]
-  # - repo: https://github.com/pre-commit/mirrors-prettier
-  #   rev: v2.7.1
-  #   hooks:
-  #   - id: prettier
-  #     types_or: [json]
+  - repo: https://github.com/AleksaC/hadolint-py
+    rev: v2.12.1b3
+    hooks:
+      - id: hadolint
+        args: [--ignore, DL3007, --ignore, DL3008]
   - repo: https://github.com/pre-commit/pre-commit-hooks
     rev: v4.6.0
     hooks:
@@ -42,7 +42,6 @@ repos:
       - id: check-yaml
         exclude: |
           (?x)(
-              ^conda/meta.yaml|
               ^.gitlab-ci.yml
               )
       - id: debug-statements
@@ -57,6 +56,5 @@ repos:
         exclude: |
           (?x)(
               ^.pixi/|
-              ^.pixi.toml/|
-              ^.pixi.lock/|
+              ^.pixi.lock|
               )

Dockerfile

@@ -6,17 +6,17 @@ COPY pyproject.toml pixi.lock /app/
 WORKDIR /app
 RUN pixi install --frozen -e cuda-base
 COPY dist/*.whl /app/
-RUN /app/.pixi/envs/cuda-base/bin/pip install --no-dependencies --no-build-isolation mednet-*.whl
-RUN pixi shell-hook --frozen -e cuda-base > /entrypoint.sh
-RUN echo "mednet" >> /entrypoint.sh
+RUN /app/.pixi/envs/cuda-base/bin/pip install --no-dependencies --no-build-isolation mednet-*.whl \
+    && pixi shell-hook --frozen -e cuda-base > /entrypoint.sh \
+    && echo "mednet" >> /entrypoint.sh
 
 FROM nvidia/cuda:12.3.1-runtime-ubuntu22.04 AS production
 
 # only copy the production environment into prod container
 COPY --from=build /app/.pixi/envs/cuda-base /app/.pixi/envs/cuda-base
 COPY --from=build /entrypoint.sh /entrypoint.sh
-RUN apt update \
-    && apt install -y libopengl0 libegl1 libgl1-mesa-glx > /dev/null \
+RUN apt-get update \
+    && apt-get install --no-install-recommends -y libopengl0 libegl1 libgl1-mesa-glx > /dev/null \
     && apt-get clean && apt-get autoclean && apt-get autoremove \
     && rm -rf /var/lib/apt/lists/*
 WORKDIR /app