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medai
software
mednet
Commits
24c7fb68
Commit
24c7fb68
authored
10 months ago
by
Daniel CARRON
Committed by
André Anjos
8 months ago
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[model] Balance loss on train DataModule if no validation one
parent
7aaec166
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1 merge request
!46
Create common library
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src/mednet/libs/common/models/model.py
+12
-4
12 additions, 4 deletions
src/mednet/libs/common/models/model.py
with
12 additions
and
4 deletions
src/mednet/libs/common/models/model.py
+
12
−
4
View file @
24c7fb68
...
@@ -16,7 +16,7 @@ from medbase.data.typing import TransformSequence
...
@@ -16,7 +16,7 @@ from medbase.data.typing import TransformSequence
from
.loss_weights
import
get_positive_weights
from
.loss_weights
import
get_positive_weights
from
.typing
import
Checkpoint
from
.typing
import
Checkpoint
logger
=
logging
.
getLogger
(
__name__
)
logger
=
logging
.
getLogger
(
"
mednet
"
)
class
Model
(
pl
.
LightningModule
):
class
Model
(
pl
.
LightningModule
):
...
@@ -216,7 +216,15 @@ class Model(pl.LightningModule):
...
@@ -216,7 +216,15 @@ class Model(pl.LightningModule):
self
.
_train_loss_arguments
[
"
pos_weight
"
]
=
train_weights
self
.
_train_loss_arguments
[
"
pos_weight
"
]
=
train_weights
logger
.
info
(
f
"
Balancing validation loss
{
self
.
_loss_type
}
.
"
)
logger
.
info
(
f
"
Balancing validation loss
{
self
.
_loss_type
}
.
"
)
validation_weights
=
get_positive_weights
(
if
"
validation
"
in
datamodule
.
val_dataloader
().
keys
():
datamodule
.
val_dataloader
()[
"
validation
"
]
validation_weights
=
get_positive_weights
(
)
datamodule
.
val_dataloader
()[
"
validation
"
]
)
else
:
logger
.
warning
(
"
Datamodule does not contain a validation dataloader. The training dataloader will be used instead.
"
)
validation_weights
=
get_positive_weights
(
datamodule
.
train_dataloader
()
)
self
.
_validation_loss_arguments
[
"
pos_weight
"
]
=
validation_weights
self
.
_validation_loss_arguments
[
"
pos_weight
"
]
=
validation_weights
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