config.rst

.. Copyright © 2022 Idiap Research Institute <contact@idiap.ch>
..
.. SPDX-License-Identifier: GPL-3.0-or-later

.. _ptbench.config:

Preset Configurations
---------------------

This module contains preset configurations for baseline CNN architectures and
datasets.


Models
======

.. autosummary::
   :toctree: api/configs/models
   :template: config.rst

   ptbench.configs.models.alexnet
   ptbench.configs.models.alexnet_pretrained
   ptbench.configs.models.densenet
   ptbench.configs.models.densenet_pretrained
   ptbench.configs.models.logistic_regression
   ptbench.configs.models.pasa
   ptbench.configs.models.signs_to_tb
   ptbench.configs.models_datasets.densenet_rs


.. _ptbench.configs.datasets:

Datasets
========

Datasets include iterative accessors to raw data
(:ref:`ptbench.setup.datasets`) including data pre-processing and augmentation,
if applicable.  Use these datasets for training and evaluating your models.

.. autosummary::
   :toctree: api/configs/datasets
   :template: config.rst

   ptbench.configs.datasets.indian.default
   ptbench.configs.datasets.indian.rgb
   ptbench.configs.datasets.indian_RS.default
   ptbench.configs.datasets.mc_ch.default
   ptbench.configs.datasets.mc_ch.rgb
   ptbench.configs.datasets.mc_ch_RS.default
   ptbench.configs.datasets.mc_ch_in.default
   ptbench.configs.datasets.mc_ch_in.rgb
   ptbench.configs.datasets.mc_ch_in_RS.default
   ptbench.configs.datasets.mc_ch_in_11k.default
   ptbench.configs.datasets.mc_ch_in_11k.rgb
   ptbench.configs.datasets.mc_ch_in_11k_RS.default
   ptbench.configs.datasets.mc_ch_in_11kv2.default
   ptbench.configs.datasets.mc_ch_in_11kv2.rgb
   ptbench.configs.datasets.mc_ch_in_11kv2_RS.default
   ptbench.configs.datasets.mc_ch_in_pc.default
   ptbench.configs.datasets.mc_ch_in_pc.rgb
   ptbench.configs.datasets.mc_ch_in_pc_RS.default
   ptbench.configs.datasets.montgomery.default
   ptbench.configs.datasets.montgomery.rgb
   ptbench.configs.datasets.montgomery_RS.default
   ptbench.configs.datasets.nih_cxr14_re.cardiomegaly
   ptbench.configs.datasets.nih_cxr14_re.default
   ptbench.configs.datasets.nih_cxr14_re_pc.idiap
   ptbench.configs.datasets.padchest.cardiomegaly_idiap
   ptbench.configs.datasets.padchest.idiap
   ptbench.configs.datasets.padchest.no_tb_idiap
   ptbench.configs.datasets.padchest.tb_idiap
   ptbench.configs.datasets.padchest.tb_idiap_rgb
   ptbench.configs.datasets.padchest_RS.tb_idiap
   ptbench.configs.datasets.shenzhen.default
   ptbench.configs.datasets.shenzhen.rgb
   ptbench.configs.datasets.shenzhen_RS.default
   ptbench.configs.datasets.tbx11k_simplified.default
   ptbench.configs.datasets.tbx11k_simplified.rgb
   ptbench.configs.datasets.tbx11k_simplified_RS.default
   ptbench.configs.datasets.tbx11k_simplified_v2.default
   ptbench.configs.datasets.tbx11k_simplified_v2.rgb
   ptbench.configs.datasets.tbx11k_simplified_v2_RS.default


.. _ptbench.configs.datasets.folds:

Cross-Validation Datasets
=========================

We support cross-validation with precise preset folds.  In this section, you
will find the configuration for the first fold (fold-0) for all supported
datasets.  Nine other folds are available for every configuration (from 1 to
9), making up 10 folds per supported dataset.


.. autosummary::
   :toctree: api/configs/datasets
   :template: config.rst

   ptbench.configs.datasets.hivtb.fold_0
   ptbench.configs.datasets.hivtb.fold_0_rgb
   ptbench.configs.datasets.hivtb_RS.fold_0
   ptbench.configs.datasets.indian.fold_0
   ptbench.configs.datasets.indian.fold_0_rgb
   ptbench.configs.datasets.indian_RS.fold_0
   ptbench.configs.datasets.mc_ch.fold_0
   ptbench.configs.datasets.mc_ch.fold_0_rgb
   ptbench.configs.datasets.mc_ch_RS.fold_0
   ptbench.configs.datasets.mc_ch_in.fold_0
   ptbench.configs.datasets.mc_ch_in.fold_0_rgb
   ptbench.configs.datasets.mc_ch_in_RS.fold_0
   ptbench.configs.datasets.mc_ch_in_11k.fold_0
   ptbench.configs.datasets.mc_ch_in_11k.fold_0_rgb
   ptbench.configs.datasets.mc_ch_in_11k_RS.fold_0
   ptbench.configs.datasets.mc_ch_in_11kv2.fold_0
   ptbench.configs.datasets.mc_ch_in_11kv2.fold_0_rgb
   ptbench.configs.datasets.mc_ch_in_11kv2_RS.fold_0
   ptbench.configs.datasets.montgomery.fold_0
   ptbench.configs.datasets.montgomery.fold_0_rgb
   ptbench.configs.datasets.montgomery_RS.fold_0
   ptbench.configs.datasets.shenzhen.fold_0
   ptbench.configs.datasets.shenzhen.fold_0_rgb
   ptbench.configs.datasets.shenzhen_RS.fold_0
   ptbench.configs.datasets.tbpoc.fold_0
   ptbench.configs.datasets.tbpoc.fold_0_rgb
   ptbench.configs.datasets.tbpoc_RS.fold_0
   ptbench.configs.datasets.tbx11k_simplified.fold_0
   ptbench.configs.datasets.tbx11k_simplified.fold_0_rgb
   ptbench.configs.datasets.tbx11k_simplified_RS.fold_0
   ptbench.configs.datasets.tbx11k_simplified_v2.fold_0
   ptbench.configs.datasets.tbx11k_simplified_v2.fold_0_rgb
   ptbench.configs.datasets.tbx11k_simplified_v2_RS.fold_0


.. include:: links.rst