clean slate

.gitattributes

-* text=auto
-
-meta.yaml text eol=lf
-build.sh text eol=lf
-bld.bat text eol=crlf

.gitignore

-*~
-*.swp

.gitlab-ci.yml

-include: 'https://gitlab.idiap.ch/bob/bob.devtools/raw/master/bob/devtools/data/gitlab-ci/base-build.yaml'

README.md

-# Conda recipes for bob dependencies not available in the defaults channel
-
-This package contains scripts and recipes for building dependence packages of
-Bob/BEAT for Conda.
-
-
-## Folder structure
-
-There is a single folder called `conda`, within this repository, where you
-should keep all conda recipes inside.
-
-
-## Adding a new package
-
-If you want to create a new recipe for a package, first:
-
-1. Read the official conda guide on this: https://conda.io/docs/user-guide/tasks/build-packages/index.html
-2. Read Conda-forge's documentation (might contradict with the official guide;
-   the official guide is the reference): https://conda-forge.org/docs/
-3. Look at similar recipes in https://github.com/AnacondaRecipes/
-
-Add your recipe to the folder called `conda` and ensure your package appears in
-the file `order.txt`.  If your package depends on another package being built
-by this repository, then ensure it is built after its dependence.
-
-If that works, upload your changes on bob.conda on a branch and create a merge
-request.  Wait for the tests to pass on the MR and make sure everything
-completes well, by inspecting the log files. If all is good, assign the merge
-request to one of the package maintainers.
-
-If you have questions, please ask in a public setting so that we don't have to
-answer the same questions all the time.

conda/beat-devel/meta.yaml

-# The original copy of this list is in bob-devel recipe. Keep them synced please.
-{% set nopin = ['ca-certificates', 'certifi', 'openssl', 'libstdcxx-ng', 'libgcc-ng', 'libcxx', 'libcxxabi'] %}
-package:
-  name: beat-devel
-  version: 2020.11.10
-
-build:
-  # the build number must be zero all the time.
-  number: 0
-  ignore_run_exports:
-  {% for package in resolved_packages('host') %}
-    - {{ package.split()[0] }}
-  {% endfor %}
-
-requirements:
-  host:
-    - bob-devel 2020.11.10
-    - python {{ python }}
-    # the dependencies are pinned in bob-devel
-    - docker-py
-    - jsonschema
-    - ncurses
-    - psycopg2
-    - python-graphviz
-    - pyzmq
-    - simplejson
-    - sphinxcontrib-httpdomain
-    - termcolor
-  run:
-    - python
-  run_constrained:
-  {% for package in resolved_packages('host') %}
-  {% if package.split()[0] not in nopin %}
-    - {{ package }}
-  {% endif %}
-  {% endfor %}
-
-about:
-  home: http://www.idiap.ch/software/beat
-  license: BSD 3-Clause
-  summary: A meta-package to define an environment for BEAT package development
-
-extra:
-  recipe-maintainers:
-    - anjos
-    - amohammadi

conda/bob-devel/meta.yaml

-# A copy of this list is in beat-devel and bob/bob as well. Keep them synced please.
-{% set nopin = ['ca-certificates', 'certifi', 'openssl', 'libstdcxx-ng', 'libgcc-ng', 'libcxx', 'libcxxabi'] %}
-package:
-  name: bob-devel
-  # please update the version of beat-devel and update bob-devel's version
-  # there as well in the same merge request.
-  version: 2020.11.10
-
-build:
-  # the build number must be zero all the time.
-  number: 0
-  ignore_run_exports:
-  {% for package in resolved_packages('host') %}
-    - {{ package.split()[0] }}
-  {% endfor %}
-
-requirements:
-  host:
-    - python {{ python }}
-
-    # Dependency list of bob and beat packages. Everything is pinned to allow
-    # for better reproducibility.
-    # IMPORTANT: To update this list, create a conda environment with all the
-    # below packages without any pinning. Once the environment is resolved,
-    # observe those versions and put them here.
-    - boost 1.73.0
-    - click 7.1.2
-    - click-plugins 1.1.1
-    - cmake 3.14.0
-    - coverage 5.3
-    - dask 2.30.0
-    - dask-jobqueue 0.7.0
-    - dask-ml 1.7.0
-    - distributed 2.30.0
-    - docker-py 4.3.1
-    - docopt 0.6.2
-    - ffmpeg 4.2.2
-    - freetype 2.10.4
-    - giflib 5.2.1
-    - h5py 2.10.0
-    - hdf5 1.10.6
-    - jinja2 2.11.2
-    - jpeg 9b
-    - jsonschema 3.2.0
-    - libblitz 1.0.1
-    - libpng 1.6.37
-    - libsvm 3.24
-    - libtiff 4.1.0
-    - make 4.2.1
-    - matplotlib 3.3.2
-    - mkl 2019.4
-    - ncurses 6.2
-    - nose 1.3.7
-    - numpy 1.19.2
-    - pandas 1.1.3
-    - pillow 8.0.1
-    - pkg-config 0.29.2
-    - psycopg2 2.8.5
-    - pybind11 2.5.0
-    - pyopengl 3.1.1
-    - pyqtgraph 0.11.0
-    - python-graphviz 0.14.2
-    - pytorch 1.7.0
-    - pyyaml 5.3.1
-    - pyzmq 19.0.2
-    - qdarkstyle 2.8.1
-    - qtpy 1.9.0
-    - requests 2.24.0
-    - schema 0.7.2
-    - scikit-image 0.17.2
-    - scikit-learn 0.23.2
-    - scipy 1.5.2
-    - setuptools 50.3.0
-    - simplejson 3.17.2
-    - sox 14.4.2
-    - sphinx 3.2.1
-    - sphinx_rtd_theme 0.4.3
-    - sphinxcontrib-httpdomain 1.7.0
-    - sphinxcontrib-programoutput 0.16
-    - sqlalchemy 1.3.20
-    - tabulate 0.8.7
-    - tensorflow 2.2.0  # [linux]
-    - termcolor 1.1.0
-    - torchvision 0.8.1
-    - tqdm 4.50.2
-    - vlfeat 0.9.21
-    - xarray 0.16.1
-    - zc.buildout 2.13.3
-    - zc.recipe.egg 2.0.7
-  run:
-    - python
-  run_constrained:
-  {% for package in resolved_packages('host') %}
-  {% if package.split()[0] not in nopin %}
-    - {{ package }}
-  {% endif %}
-  {% endfor %}
-
-test:
-  requires:
-    - numpy
-    - ffmpeg
-    - pytorch
-    - torchvision
-  commands:
-    # we expect these features from ffmpeg:
-    - ffmpeg -codecs | grep "DEVI.S zlib"  # [unix]
-    - ffmpeg -codecs | grep "DEV.LS h264"  # [unix]
-
-about:
-  home: http://www.idiap.ch/software/bob
-  license: BSD 3-Clause
-  summary: A meta-package to define an environment for Bob package development
-
-extra:
-  recipe-maintainers:
-    - amohammadi
-    - anjos

conda/bob-devel/run_test.py

-import sys
-
-# couple of imports to see if packages are working
-import numpy
-
-
-def test_pytorch():
-    import torch
-    from torchvision.models import DenseNet
-
-    model = DenseNet()
-    t = torch.randn(1, 3, 224, 224)
-    out = model(t)
-    assert out.shape[1] == 1000
-
-
-if sys.platform.startswith("linux"):
-    # test if pytorch installation is sane
-    test_pytorch()

conda/ddt/LICENSE.txt

-BSD 3-clause license
-Copyright (c) 2015-2018, conda-forge
-All rights reserved.
-
-Redistribution and use in source and binary forms, with or without modification, are permitted provided that the following conditions are met:
-
-1. Redistributions of source code must retain the above copyright notice, this list of conditions and the following disclaimer.
-
-2. Redistributions in binary form must reproduce the above copyright notice, this list of conditions and the following disclaimer in the documentation and/or other materials provided with the distribution.
-
-3. Neither the name of the copyright holder nor the names of its contributors may be used to endorse or promote products derived from this software without specific prior written permission.
-
-THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
-

conda/ddt/meta.yaml

-{% set name = "ddt" %}
-{% set version = "1.2.1" %}
-{% set sha256 = "7914875d59fccc5b8c944e0c0864d9145f3b48b948566e407d39fae04265e192" %}
-{% set repo = "txels" %}
-
-package:
-  name: {{ name|lower }}
-  version: {{ version }}
-
-source:
-  fn: {{ name }}-{{ version }}.tar.gz
-  url: https://github.com/{{ repo }}/{{ name }}/archive/{{ version }}.tar.gz
-  sha256: {{ sha256 }}
-
-build:
-  number: 2
-  script: python -m pip install --no-deps --ignore-installed .
-
-requirements:
-  host:
-    - pip
-    - python
-    - setuptools
-  run:
-    - python
-
-test:
-  requires:
-    - flake8
-    - nose
-    - six >=1.4.0
-    - pyyaml
-    - mock
-    - pytest
-  source_files:
-    - test/*
-  commands:
-    - py.test
-
-about:
-  home: https://github.com/txels/ddt
-  license: MIT
-  license_family: MIT
-  license_file: LICENSE.md
-  summary: 'DDT (Data-Driven Tests) allows you to multiply one test case by
-   running it with different test data, and make it appear as multiple test
-   cases.'
-  description: 'DDT (Data-Driven Tests) allows you to multiply one test case by
-   running it with different test data, and make it appear as multiple test
-   cases.'
-  doc_url: http://ddt.readthedocs.io/en/latest/
-  dev_url: https://github.com/txels/ddt
-
-extra:
-  recipe-maintainers:
-    - CJ-Wright
-    - sgaist

conda/libblitz/build.sh

-#!/bin/bash
-
-if [[ $ARCH == 64 ]];
-then
-	export ARCH_CMD="--enable-64bit"
-else
-	export ARCH_CMD="--enable-simd-width=8"
-fi
-
-autoreconf -vif
-
-./configure \
-  --prefix="${PREFIX}" \
-  --enable-static \
-  --enable-shared \
-  --enable-optimize \
-  --enable-threadsafe \
-  --enable-serialization \
-  ${ARCH_CMD} \
-  CPPFLAGS="-I${PREFIX}/include -pthread" \
-  CFLAGS="-I${PREFIX}/include -pthread -DBZHAVE_STD" \
-  CXXFLAGS="-I${PREFIX}/include -pthread -DBZHAVE_STD" \
-  LDFLAGS="-L${PREFIX}/lib"
-make
-make install

conda/libblitz/meta.yaml

-{% set version = "1.0.1" %}
-
-package:
-  name: libblitz
-  version: {{ version }}
-
-source:
-  git_url: https://github.com/blitzpp/blitz.git
-  git_rev: {{ version }}
-
-build:
-  number: 1
-  run_exports:
-    - {{ pin_subpackage('libblitz', max_pin='x.x.x') }}
-
-requirements:
-  build:
-    - python 2
-    - autoconf
-    - automake
-    - libtool
-    - {{ compiler('c') }}
-    - {{ compiler('cxx') }}
-
-test:
-  commands:
-    - test -d $PREFIX/include/blitz        # [unix]
-    - test -e $PREFIX/lib/libblitz.a       # [unix]
-    - test -e $PREFIX/lib/libblitz.so      # [linux]
-    - test -e $PREFIX/lib/libblitz.dylib   # [osx]
-    - conda inspect linkages -p $PREFIX libblitz  # [not win]
-    - conda inspect objects -p $PREFIX libblitz  # [osx]
-
-about:
-  home: https://sourceforge.net/projects/blitz
-  license: LGPL 3
-  summary: A C++ class library for scientific computing which provides performance on par with Fortran 77/90
-
-extra:
-  recipe-maintainers:
-    - 183amir
-    - anjos

conda/libsvm/bld.bat

-nmake /f Makefile.win clean all
-if errorlevel 1 exit 1
-
-REM Install step
-copy windows\libsvm.dll %LIBRARY_LIB%\libsvm.dll
-if errorlevel 1 exit 1
-xcopy windows\*.exe %LIBRARY_BIN%\
-if errorlevel 1 exit 1
-copy svm.h %LIBRARY_INC%\svm.h
-if errorlevel 1 exit 1

conda/libsvm/build.sh

-#!/bin/bash
-
-if [[ `uname` == 'Darwin' ]]; then
-	sed -i '' 's/-soname/-install_name/g' Makefile
-	sed -i '' 's/libsvm.so.$(SHVER)/libsvm.$(SHVER).dylib/g' Makefile
-fi
-make all
-make lib
-# there is no make check or something similar and no make install
-
-mkdir -p $PREFIX/share/licenses/libsvm $PREFIX/lib $PREFIX/include $PREFIX/bin
-install -m644 svm.h $PREFIX/include/svm.h
-install -m644 COPYRIGHT $PREFIX/share/licenses/libsvm/LICENSE
-install -m755 svm-train $PREFIX/bin/
-install -m755 svm-scale $PREFIX/bin/
-install -m755 svm-predict $PREFIX/bin/
-if [[ `uname` == 'Darwin' ]]; then
-	install -m644 libsvm.2.dylib $PREFIX/lib/
-	ln -s libsvm.2.dylib $PREFIX/lib/libsvm.dylib
-else
-	install -m644 libsvm.so.2 $PREFIX/lib/
-	ln -s libsvm.so.2 $PREFIX/lib/libsvm.so
-fi

conda/libsvm/meta.yaml

-{% set version = "3.24" %}
-{% set flatversion = version.replace(".", "") %}
-{% set sha256 = "3ba1ac74ee08c4dd57d3a9e4a861ffb57dab88c6a33fd53eac472fc84fbb2a8f" %}
-
-package:
-  name: libsvm
-  version: {{ version }}
-
-source:
-  fn: libsvm-{{ flatversion }}.tar.gz
-  url: https://github.com/cjlin1/libsvm/archive/v{{ flatversion }}.tar.gz
-  sha256: {{ sha256 }}
-
-  patches:
-    - win32.patch  # [win32]
-
-build:
-  number: 0
-  run_exports:
-    - {{ pin_subpackage('libsvm', max_pin='x.x') }}
-  features:
-    - vc9   # [win and py27]
-    - vc10  # [win and py34]
-    - vc14  # [win and py35]
-
-requirements:
-  build:
-    - python  # [win]
-    - {{ compiler('c') }}
-    - {{ compiler('cxx') }}
-
-test:
-  requires:
-    - python {{ environ['PY_VER'] + '*' }}                    # [win]
-
-  commands:
-    - test -e $PREFIX/include/svm.h                           # [unix]
-    - test -e $PREFIX/lib/libsvm.so                           # [linux]
-    - test -e $PREFIX/lib/libsvm.so.2                         # [linux]
-    - test -e $PREFIX/lib/libsvm.dylib                        # [osx]
-    - test -e $PREFIX/lib/libsvm.2.dylib                      # [osx]
-    - svm-train | grep 'Usage'                                # [unix]
-    - svm-scale | grep 'Usage'                                # [unix]
-    - svm-predict | grep 'Usage'                              # [unix]
-    - svm-train | find "Usage"                                # [win]
-    - svm-scale | find "Usage"                                # [win]
-    - svm-predict | find "Usage"                              # [win]
-    - if not exist %PREFIX%\\Library\\lib\\libsvm.dll exit 1  # [win]
-    - conda inspect linkages -p $PREFIX libsvm  # [not win]
-    - conda inspect objects -p $PREFIX libsvm  # [osx]
-
-about:
-  home: https://github.com/cjlin1/libsvm
-  license: BSD 3-Clause
-  summary: A simple, easy-to-use, and efficient software for SVM classification and regression.
-
-extra:
-  recipe-maintainers:
-    - 183amir
-    - patricksnape
-    - anjos

conda/libsvm/win32.patch

---- Makefile.win
-+++ Makefile.win
-@@ -7,3 +7,3 @@
- CXX = cl.exe
--CFLAGS = /nologo /O2 /EHsc /I. /D _WIN64 /D _CRT_SECURE_NO_DEPRECATE
-+CFLAGS = /nologo /O2 /EHsc /I. /D _WIN32 /D _CRT_SECURE_NO_DEPRECATE
- TARGET = windows

conda/pytest-qt/meta.yaml

-{% set name = "pytest-qt" %}
-{% set version = "3.2.2" %}
-{% set file_ext = "tar.gz" %}
-{% set hash_type = "sha256" %}
-{% set hash_value = "f6ecf4b38088ae1092cbd5beeaf714516d1f81f8938626a2eac546206cdfe7fa" %}
-
-package:
-  name: '{{ name|lower }}'
-  version: '{{ version }}'
-
-source:
-  fn: '{{ name }}-{{ version }}.{{ file_ext }}'
-  url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/{{ name }}-{{ version }}.{{ file_ext }}
-  '{{ hash_type }}': '{{ hash_value }}'
-
-build:
-  number: 1
-  script: "{{ PYTHON }} -m pip install . --no-deps --ignore-installed --no-cache-dir"
-
-requirements:
-  host:
-    - pip
-    - python
-    - setuptools
-    - setuptools_scm
-  run:
-    - python
-    - pytest >=2.7.0
-
-test:
-  requires:
-    - pyqt 5.*
-    - pytest
-  imports:
-    - pytestqt
-  commands:
-    - py.test --help
-
-about:
-  home: http://github.com/pytest-dev/pytest-qt
-  license: MIT
-  license_family: MIT
-  summary: pytest support for PyQt and PySide applications
-  doc_url: http://pytest-qt.readthedocs.io/en/latest/
-  dev_url: https://github.com/pytest-dev/pytest-qt
-
-extra:
-  recipe-maintainers: sgaist

conda/schema/meta.yaml

-{% set version = "0.7.2" %}
-
-package:
-  name: schema
-  version: {{ version }}
-
-source:
-  url: https://pypi.io/packages/source/s/schema/schema-{{ version }}.tar.gz
-  sha256: b536f2375b49fdf56f36279addae98bd86a8afbd58b3c32ce363c464bed5fc1c
-
-build:
-  number: 0
-  script: python -m pip install --no-deps --ignore-installed .
-
-requirements:
-  build:
-    - pip
-    - python
-    - setuptools
-
-  run:
-    - python
-    - contextlib2 >=0.5.5
-
-test:
-  requires:
-    - mock
-    - pytest
-    - setuptools
-
-  source_files:
-    - test_schema.py
-    - LICENSE-MIT
-
-  imports:
-    - schema
-
-  commands:
-    - python -c 'import pkg_resources; pkg_resources.require("schema")'
-    - pytest test_schema.py
-
-about:
-  home: https://github.com/keleshev/schema
-  license: MIT License
-  summary: 'Simple data validation library'
-
-extra:
-  recipe-maintainers:
-    - anjos

conda/sox/build.sh

-#!/bin/bash
-
-# provide --disable-stack-protector so that it doesn't link against gcc
-./configure --prefix=$PREFIX --exec-prefix=$PREFIX --disable-stack-protector
-make
-
-if [ "$(uname -s)" == "Darwin" ]; then
-	DYLD_FALLBACK_LIBRARY_PATH=$PREFIX/lib make bindir=. installcheck
-else
-	make bindir=. installcheck
-fi
-
-make install

conda/sox/meta.yaml

-{% set name = "sox" %}
-{% set version = "14.4.2" %}
-
-package:
-  name: {{ name }}
-  version: {{ version }}
-
-source:
-  fn: {{ name }}-{{ version }}.tar.gz
-  url: http://sourceforge.net/projects/sox/files/sox/{{ version }}/sox-{{ version }}.tar.gz
-  md5: d04fba2d9245e661f245de0577f48a33
-
-build:
-  number: 8
-  detect_binary_files_with_prefix: true
-  skip: true  # [win]
-  run_exports:
-    # https://abi-laboratory.pro/tracker/timeline/sox/
-    - {{ pin_subpackage(name, max_pin='x.x.x') }}
-
-requirements:
-  build:
-    - {{ compiler('c') }}
-    - {{ compiler('cxx') }}
-
-  host:
-    - libpng {{ libpng }}
-    - zlib {{ zlib }}
-    - xz {{ xz }}
-
-test:
-  commands:
-    - test -e $PREFIX/include/sox.h      # [unix]
-    - test -e $PREFIX/lib/libsox.a       # [unix]
-    - test -e $PREFIX/lib/libsox.so      # [linux]
-    - test -e $PREFIX/lib/libsox.dylib   # [osx]
-    - otool -L $PREFIX/lib/libsox.dylib  # [osx]
-    - conda inspect linkages -p $PREFIX {{ name }}  # [not win]
-    - conda inspect objects -p $PREFIX {{ name }}  # [osx]
-
-
-about:
-  home: http://sox.sourceforge.net/
-  license: LGPLv2
-  summary: A cross-platform command line utility that can convert various formats of computer audio files in to other formats.
-
-extra:
-  recipe-maintainers:
-    - amohammadi

conda/sphinxcontrib-httpdomain/meta.yaml

-{% set name = "sphinxcontrib-httpdomain" %}
-{% set version = "1.7.0" %}
-
-package:
-  name: {{ name|lower }}
-  version: {{ version }}
-
-source:
-  url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/{{ name }}-{{ version }}.tar.gz
-  sha256: ac40b4fba58c76b073b03931c7b8ead611066a6aebccafb34dc19694f4eb6335
-
-build:
-  number: 2
-  script: "{{ PYTHON }} -m pip install --no-deps --ignore-installed --no-cache-dir ."
-
-requirements:
-  host:
-    - python
-    - pip
-  run:
-    - python
-    - sphinx >=1.5
-    - six
-
-test:
-  imports:
-    - sphinxcontrib.httpdomain
-
-about:
-  home: https://github.com/sphinx-contrib/httpdomain
-  license: BSD-2-Clause
-  license_family: BSD
-  license_file: LICENSE
-  summary: 'Sphinx domain for describing HTTP APIs'
-  description: |
-    This contrib extension, `sphinxcontrib.httpdomain¡, provides a Sphinx domain
-     for describing HTTP APIs.
-  doc_url: https://sphinxcontrib-httpdomain.readthedocs.io/en/stable/
-  dev_url: https://github.com/sphinx-contrib/httpdomain
-
-extra:
-  recipe-maintainers:
-    - anjos

conda/sphinxcontrib-programoutput/meta.yaml

-{% set name = "sphinxcontrib-programoutput" %}
-{% set version = "0.16" %}
-{% set sha256 = "0caaa216d0ad8d2cfa90a9a9dba76820e376da6e3152be28d10aedc09f82a3b0" %}
-
-package:
-  name: {{ name|lower }}
-  version: {{ version }}
-
-source:
-  fn: {{ name }}-{{ version }}.tar.gz
-  url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/{{ name }}-{{ version }}.tar.gz
-  sha256: {{ sha256 }}
-
-build:
-  number: 1
-  script: "{{ PYTHON }} -m pip install --no-deps --ignore-installed --no-cache-dir ."
-
-requirements:
-  build:
-    - python
-    - pip
-    - sphinx
-
-  run:
-    - python
-    - sphinx
-
-test:
-  imports:
-    - sphinxcontrib.programoutput
-
-about:
-  home: https://bitbucket.org/birkenfeld/sphinx-contrib
-  license: BSD 2-clause
-  license_family: BSD
-  license_file: LICENSE
-  summary: 'Sphinx extension to include program output'
-
-  description: |
-    A Sphinx extension to literally insert the output of arbitrary commands