[beat/bob-devel] Updates to base software stack (closes #57)

conda/beat-devel/meta.yaml

@@ -26,7 +26,7 @@ requirements:
     - python-graphviz 0.8.4
     - pyzmq 17.1.2
     - simplejson 3.16.0
-    - sphinxcontrib-programoutput 0.11
+    - sphinxcontrib-programoutput 0.14
     - sphinxcontrib-httpdomain 1.7.0
     - psycopg2 2.7.6.1
   run:

conda/bob-devel/meta.yaml

@@ -2,8 +2,8 @@
 {% set nopin = ['ca-certificates', 'certifi', 'openssl', 'libstdcxx-ng', 'libgcc-ng', 'libcxx', 'libcxxabi'] %}
 package:
   name: bob-devel
-  # please update the version of beat-devel and update bob-devel's version there
-  # as well in the same merge request.
+  # please update the version of beat-devel and update bob-devel's version
+  # there as well in the same merge request.
   version: 2019.08.08
 
 build:
@@ -17,9 +17,9 @@ build:
 requirements:
   host:
     - python {{ python }}
-    # IMPORTANT: To update this list, create a conda environment with all the below
-    # packages without any pinning. Once the environment is resolved, observe those
-    # versions and put them here.
+    # IMPORTANT: To update this list, create a conda environment with all the
+    # below packages without any pinning. Once the environment is resolved,
+    # observe those versions and put them here.
 
     # Dependency list of bob packages. Everything is pinned to allow for better
     # reproducibility.
@@ -29,7 +29,7 @@ requirements:
     - click-plugins 1.1.1
     - cmake 3.14.0
     - coverage 4.5.3
-    - cyvlfeat 0.4.6
+    - cyvlfeat 0.5.1
     - docopt 0.6.2
     # to make sure we get ffmpeg from our own channel which has more codecs
     - ffmpeg 4.0 hadceb68_1  # [linux]
@@ -47,22 +47,22 @@ requirements:
     - libsvm 3.22
     - libtiff 4.0.10
     - matplotlib 3.1.0
-    - menpo 0.8.1
-    - menpofit 0.5.0
+    - menpo 0.9.1
+    - menpofit 0.6.1
     - mkl 2019.4
-    - mne 0.15.2
-    - mr.developer 1.38
+    - mne 0.18.1
+    - mr.developer 2.0.0
     - nose 1.3.7
     - numpy 1.16.4
     - opencv 3.4.2
     - pillow 6.1.0
     - pkg-config 0.29.2
-    - pyedflib 0.1.11
+    - pyedflib 0.1.14
     - cudatoolkit 9.0  # [linux]
     - pytorch 1.1.0  # [linux]
     - pyyaml 5.1.1
     - requests 2.22.0
-    - schema 0.6.8
+    - schema 0.7.0
     - scikit-image 0.15.0
     - scikit-learn 0.21.2
     - scipy 1.2.1
@@ -76,9 +76,10 @@ requirements:
     - tensorflow 1.14.0
     - torchvision 0.3.0  # [linux]
     - vlfeat 0.9.21
-    - zc.buildout 2.12.2
+    - zc.buildout 2.13.2
     - zc.recipe.egg 2.0.7
-    # beat-devel direct dependencies that leak to bob-devel as indirect dependencies:
+    # beat-devel direct dependencies that leak to bob-devel as indirect
+    # dependencies:
     - termcolor 1.1.0
     # semi-supported dependencies (drop them if they conflict):
     - dlib 19.7