Merge branch 'snakemake' into 'master'

Adds "snakemake" recipe

See merge request bob/bob.conda!429

conda/ratelimiter/meta.yaml

+{% set version = "1.2.0.post0" %}
+
+package:
+  name: ratelimiter
+  version: {{ version }}
+
+source:
+  fn: ratelimiter-{{ version }}.tar.gz
+  url: https://pypi.io/packages/source/r/ratelimiter/ratelimiter-{{ version }}.tar.gz
+  sha256: 5c395dcabdbbde2e5178ef3f89b568a3066454a6ddc223b76473dac22f89b4f7
+
+build:
+  number: 0
+  noarch: python
+  script: python -m pip install --no-deps --ignore-installed .
+
+requirements:
+  build:
+    - pip
+    - python
+    - setuptools
+  run:
+    - python
+
+test:
+  imports:
+    - ratelimiter
+
+about:
+  home: https://github.com/RazerM/ratelimiter
+  license: Apache-2.0
+  license_family: APACHE
+  license_file: LICENSE
+  summary: Simple Python module providing rate limiting.
+  description: |
+    This package provides the ratelimiter module, which ensures that an operation
+    will not be executed more than a given number of times on a given period.
+    This can prove useful when working with third parties APIs which require
+    for example a maximum of 10 requests per second.
+
+extra:
+  recipe-maintainers:
+    - anjos

conda/snakemake/meta.yaml

+{% set version = "5.5.4" %}
+
+package:
+  name: snakemake
+  version: {{ version }}
+
+source:
+  url: https://pypi.io/packages/source/s/snakemake/snakemake-{{ version }}.tar.gz
+  sha256: 44ef8e4d9850b2480f29ddbcc6d57540be9440d1422366bb3bb68e285377a959
+
+build:
+  noarch: python
+  script: python -m pip install --no-deps --ignore-installed .
+  entry_points:
+    - snakemake = snakemake:main
+    - snakemake-bash-completion = snakemake:bash_completion
+
+requirements:
+  host:
+    - python >=3.5
+    - pip
+    - setuptools
+  run:
+    - python >=3.5
+    - setuptools
+    - wrapt
+    - requests
+    - docutils
+    - pyyaml
+    - datrie
+    - requests >=2.8.1
+    - psutil
+    - ratelimiter
+    - configargparse
+    - appdirs
+    - jsonschema
+    - gitpython
+    - jinja2
+    - pygraphviz
+    - networkx >=2.0
+    - dropbox >=7.2.1
+    - pygments
+    # nice optionals not included with the default package
+    #- ftputil >=3.2
+    #- filechunkio >=1.6
+    #- pysftp >=0.2.8
+    #- aioeasywebdav
+    #- pandas  #not required "required"
+    #- python-irodsclient
+    #- google-cloud-storage
+    #- boto3
+
+test:
+  imports:
+    - snakemake
+  commands:
+    - export GIT\_PYTHON_REFRESH=warn
+    - snakemake --version
+    - snakemake --version | grep "{{ version }}"
+
+about:
+  home: https://snakemake.readthedocs.io
+  license: MIT
+  summary: A popular workflow management system aiming at full in-silico reproducibility.
+  description: |
+    Snakemake is a workflow management system that aims to reduce the
+    complexity of creating workflows by providing a fast and comfortable
+    execution environment, together with a clean and modern specification
+    language in python style. Snakemake workflows are essentially Python
+    scripts extended by declarative code to define rules. Rules describe how to
+    create output files from input files. This installation is copied from
+    bioconda and contains a more or less "packed" setup, with most used
+    functionality.
+
+extra:
+  skip-lints:
+    - uses_setuptools  # uses pkg_resoures during run time
+  recipe-maintainers:
+    - anjos

python.txt

@@ -22,5 +22,7 @@ conda/nodeenv
 conda/pre-commit
 conda/pytest-qt
 conda/ddt
+conda/ratelimiter
+conda/snakemake
 conda/bob-devel
 conda/beat-devel