Commit 256fe604 authored by André Anjos's avatar André Anjos 💬

Merge branch 'snakemake' into 'master'

Adds "snakemake" recipe

See merge request bob/bob.conda!429
parents e6964e53 9ca99b85
Pipeline #32815 passed with stage
in 48 minutes and 31 seconds
{% set version = "1.2.0.post0" %}
package:
name: ratelimiter
version: {{ version }}
source:
fn: ratelimiter-{{ version }}.tar.gz
url: https://pypi.io/packages/source/r/ratelimiter/ratelimiter-{{ version }}.tar.gz
sha256: 5c395dcabdbbde2e5178ef3f89b568a3066454a6ddc223b76473dac22f89b4f7
build:
number: 0
noarch: python
script: python -m pip install --no-deps --ignore-installed .
requirements:
build:
- pip
- python
- setuptools
run:
- python
test:
imports:
- ratelimiter
about:
home: https://github.com/RazerM/ratelimiter
license: Apache-2.0
license_family: APACHE
license_file: LICENSE
summary: Simple Python module providing rate limiting.
description: |
This package provides the ratelimiter module, which ensures that an operation
will not be executed more than a given number of times on a given period.
This can prove useful when working with third parties APIs which require
for example a maximum of 10 requests per second.
extra:
recipe-maintainers:
- anjos
{% set version = "5.5.4" %}
package:
name: snakemake
version: {{ version }}
source:
url: https://pypi.io/packages/source/s/snakemake/snakemake-{{ version }}.tar.gz
sha256: 44ef8e4d9850b2480f29ddbcc6d57540be9440d1422366bb3bb68e285377a959
build:
noarch: python
script: python -m pip install --no-deps --ignore-installed .
entry_points:
- snakemake = snakemake:main
- snakemake-bash-completion = snakemake:bash_completion
requirements:
host:
- python >=3.5
- pip
- setuptools
run:
- python >=3.5
- setuptools
- wrapt
- requests
- docutils
- pyyaml
- datrie
- requests >=2.8.1
- psutil
- ratelimiter
- configargparse
- appdirs
- jsonschema
- gitpython
- jinja2
- pygraphviz
- networkx >=2.0
- dropbox >=7.2.1
- pygments
# nice optionals not included with the default package
#- ftputil >=3.2
#- filechunkio >=1.6
#- pysftp >=0.2.8
#- aioeasywebdav
#- pandas #not required "required"
#- python-irodsclient
#- google-cloud-storage
#- boto3
test:
imports:
- snakemake
commands:
- export GIT\_PYTHON_REFRESH=warn
- snakemake --version
- snakemake --version | grep "{{ version }}"
about:
home: https://snakemake.readthedocs.io
license: MIT
summary: A popular workflow management system aiming at full in-silico reproducibility.
description: |
Snakemake is a workflow management system that aims to reduce the
complexity of creating workflows by providing a fast and comfortable
execution environment, together with a clean and modern specification
language in python style. Snakemake workflows are essentially Python
scripts extended by declarative code to define rules. Rules describe how to
create output files from input files. This installation is copied from
bioconda and contains a more or less "packed" setup, with most used
functionality.
extra:
skip-lints:
- uses_setuptools # uses pkg_resoures during run time
recipe-maintainers:
- anjos
......@@ -22,5 +22,7 @@ conda/nodeenv
conda/pre-commit
conda/pytest-qt
conda/ddt
conda/ratelimiter
conda/snakemake
conda/bob-devel
conda/beat-devel
Markdown is supported
0%
or
You are about to add 0 people to the discussion. Proceed with caution.
Finish editing this message first!
Please register or to comment