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Commit 87554107 authored by Amir MOHAMMADI's avatar Amir MOHAMMADI
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Merge branch 'python36'

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.gitlab-ci.yml
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...@@ -142,31 +142,6 @@ deploy_linux_27: ...@@ -142,31 +142,6 @@ deploy_linux_27:
- conda-linux - conda-linux
# Linux + Python 3.4: Builds and tests
build_linux_34:
<<: *build_job
variables: &linux_34_build_variables
PYTHON_VERSION: "3.4"
tags:
- conda-linux
test_linux_34:
<<: *test_job
variables: *linux_34_build_variables
dependencies:
- build_linux_34
tags:
- conda-linux
wheels_linux_34:
<<: *wheels_job
variables: *linux_34_build_variables
dependencies:
- build_linux_34
tags:
- conda-linux
# Linux + Python 3.5: Builds, tests and uploads wheel # Linux + Python 3.5: Builds, tests and uploads wheel
build_linux_35: build_linux_35:
<<: *build_job <<: *build_job
...@@ -200,6 +175,31 @@ docs_linux_35: ...@@ -200,6 +175,31 @@ docs_linux_35:
- conda-linux - conda-linux
# Linux + Python 3.6: Builds and tests
build_linux_36:
<<: *build_job
variables: &linux_36_build_variables
PYTHON_VERSION: "3.6"
tags:
- conda-linux
test_linux_36:
<<: *test_job
variables: *linux_36_build_variables
dependencies:
- build_linux_36
tags:
- conda-linux
wheels_linux_36:
<<: *wheels_job
variables: *linux_36_build_variables
dependencies:
- build_linux_36
tags:
- conda-linux
# Mac OSX + Python 2.7: Builds and tests # Mac OSX + Python 2.7: Builds and tests
build_macosx_27: build_macosx_27:
<<: *build_job <<: *build_job
...@@ -225,51 +225,51 @@ wheels_macosx_27: ...@@ -225,51 +225,51 @@ wheels_macosx_27:
- conda-macosx - conda-macosx
# Mac OSX + Python 3.4: Builds and tests # Mac OSX + Python 3.5: Builds and tests
build_macosx_34: build_macosx_35:
<<: *build_job <<: *build_job
variables: &macosx_34_build_variables variables: &macosx_35_build_variables
PYTHON_VERSION: "3.4" PYTHON_VERSION: "3.5"
tags: tags:
- conda-macosx - conda-macosx
test_macosx_34: test_macosx_35:
<<: *test_job <<: *test_job
variables: *macosx_34_build_variables variables: *macosx_35_build_variables
dependencies: dependencies:
- build_macosx_34 - build_macosx_35
tags: tags:
- conda-macosx - conda-macosx
wheels_macosx_34: wheels_macosx_35:
<<: *wheels_job <<: *wheels_job
variables: *macosx_34_build_variables variables: *macosx_35_build_variables
dependencies: dependencies:
- build_macosx_34 - build_macosx_35
tags: tags:
- conda-macosx - conda-macosx
# Mac OSX + Python 3.5: Builds and tests # Mac OSX + Python 3.6: Builds and tests
build_macosx_35: build_macosx_36:
<<: *build_job <<: *build_job
variables: &macosx_35_build_variables variables: &macosx_36_build_variables
PYTHON_VERSION: "3.5" PYTHON_VERSION: "3.6"
tags: tags:
- conda-macosx - conda-macosx
test_macosx_35: test_macosx_36:
<<: *test_job <<: *test_job
variables: *macosx_35_build_variables variables: *macosx_36_build_variables
dependencies: dependencies:
- build_macosx_35 - build_macosx_36
tags: tags:
- conda-macosx - conda-macosx
wheels_macosx_35: wheels_macosx_36:
<<: *wheels_job <<: *wheels_job
variables: *macosx_35_build_variables variables: *macosx_36_build_variables
dependencies: dependencies:
- build_macosx_35 - build_macosx_36
tags: tags:
- conda-macosx - conda-macosx
MANIFEST.in
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include LICENSE README.rst bootstrap-buildout.py buildout.cfg develop.cfg requirements.txt version.txt include LICENSE README.rst buildout.cfg develop.cfg requirements.txt version.txt
recursive-include doc conf.py *.rst recursive-include doc conf.py *.rst
recursive-include bob *.cpp *.h recursive-include bob *.cpp *.h
README.rst
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...@@ -7,6 +7,8 @@ ...@@ -7,6 +7,8 @@
:target: https://www.idiap.ch/software/bob/docs/latest/bob/bob.math/master/index.html :target: https://www.idiap.ch/software/bob/docs/latest/bob/bob.math/master/index.html
.. image:: https://gitlab.idiap.ch/bob/bob.math/badges/master/build.svg .. image:: https://gitlab.idiap.ch/bob/bob.math/badges/master/build.svg
:target: https://gitlab.idiap.ch/bob/bob.math/commits/master :target: https://gitlab.idiap.ch/bob/bob.math/commits/master
.. image:: https://gitlab.idiap.ch/bob/bob.math/badges/master/coverage.svg
:target: https://gitlab.idiap.ch/bob/bob.math/commits/master
.. image:: https://img.shields.io/badge/gitlab-project-0000c0.svg .. image:: https://img.shields.io/badge/gitlab-project-0000c0.svg
:target: https://gitlab.idiap.ch/bob/bob.math :target: https://gitlab.idiap.ch/bob/bob.math
.. image:: http://img.shields.io/pypi/v/bob.math.svg .. image:: http://img.shields.io/pypi/v/bob.math.svg
...@@ -26,11 +28,10 @@ Bob_. This package contains Bob's math functionality. ...@@ -26,11 +28,10 @@ Bob_. This package contains Bob's math functionality.
Installation Installation
------------ ------------
Follow our `installation`_ instructions. Then, using the Python interpreter Complete Bob's `installation`_ instructions. Then, to install this pacakge,
provided by the distribution, bootstrap and buildout this package:: run::
$ python bootstrap-buildout.py $ conda install bob.math
$ ./bin/buildout
Contact Contact
......
bootstrap-buildout.py deleted 100644 → 0
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− 210
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##############################################################################
#
# Copyright (c) 2006 Zope Foundation and Contributors.
# All Rights Reserved.
#
# This software is subject to the provisions of the Zope Public License,
# Version 2.1 (ZPL). A copy of the ZPL should accompany this distribution.
# THIS SOFTWARE IS PROVIDED "AS IS" AND ANY AND ALL EXPRESS OR IMPLIED
# WARRANTIES ARE DISCLAIMED, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
# WARRANTIES OF TITLE, MERCHANTABILITY, AGAINST INFRINGEMENT, AND FITNESS
# FOR A PARTICULAR PURPOSE.
#
##############################################################################
"""Bootstrap a buildout-based project
Simply run this script in a directory containing a buildout.cfg.
The script accepts buildout command-line options, so you can
use the -c option to specify an alternate configuration file.
"""
import os
import shutil
import sys
import tempfile
from optparse import OptionParser
__version__ = '2015-07-01'
# See zc.buildout's changelog if this version is up to date.
tmpeggs = tempfile.mkdtemp(prefix='bootstrap-')
usage = '''\
[DESIRED PYTHON FOR BUILDOUT] bootstrap.py [options]
Bootstraps a buildout-based project.
Simply run this script in a directory containing a buildout.cfg, using the
Python that you want bin/buildout to use.
Note that by using --find-links to point to local resources, you can keep
this script from going over the network.
'''
parser = OptionParser(usage=usage)
parser.add_option("--version",
action="store_true", default=False,
help=("Return bootstrap.py version."))
parser.add_option("-t", "--accept-buildout-test-releases",
dest='accept_buildout_test_releases',
action="store_true", default=False,
help=("Normally, if you do not specify a --version, the "
"bootstrap script and buildout gets the newest "
"*final* versions of zc.buildout and its recipes and "
"extensions for you. If you use this flag, "
"bootstrap and buildout will get the newest releases "
"even if they are alphas or betas."))
parser.add_option("-c", "--config-file",
help=("Specify the path to the buildout configuration "
"file to be used."))
parser.add_option("-f", "--find-links",
help=("Specify a URL to search for buildout releases"))
parser.add_option("--allow-site-packages",
action="store_true", default=False,
help=("Let bootstrap.py use existing site packages"))
parser.add_option("--buildout-version",
help="Use a specific zc.buildout version")
parser.add_option("--setuptools-version",
help="Use a specific setuptools version")
parser.add_option("--setuptools-to-dir",
help=("Allow for re-use of existing directory of "
"setuptools versions"))
options, args = parser.parse_args()
if options.version:
print("bootstrap.py version %s" % __version__)
sys.exit(0)
######################################################################
# load/install setuptools
try:
from urllib.request import urlopen
except ImportError:
from urllib2 import urlopen
ez = {}
if os.path.exists('ez_setup.py'):
exec(open('ez_setup.py').read(), ez)
else:
exec(urlopen('https://bootstrap.pypa.io/ez_setup.py').read(), ez)
if not options.allow_site_packages:
# ez_setup imports site, which adds site packages
# this will remove them from the path to ensure that incompatible versions
# of setuptools are not in the path
import site
# inside a virtualenv, there is no 'getsitepackages'.
# We can't remove these reliably
if hasattr(site, 'getsitepackages'):
for sitepackage_path in site.getsitepackages():
# Strip all site-packages directories from sys.path that
# are not sys.prefix; this is because on Windows
# sys.prefix is a site-package directory.
if sitepackage_path != sys.prefix:
sys.path[:] = [x for x in sys.path
if sitepackage_path not in x]
setup_args = dict(to_dir=tmpeggs, download_delay=0)
if options.setuptools_version is not None:
setup_args['version'] = options.setuptools_version
if options.setuptools_to_dir is not None:
setup_args['to_dir'] = options.setuptools_to_dir
ez['use_setuptools'](**setup_args)
import setuptools
import pkg_resources
# This does not (always?) update the default working set. We will
# do it.
for path in sys.path:
if path not in pkg_resources.working_set.entries:
pkg_resources.working_set.add_entry(path)
######################################################################
# Install buildout
ws = pkg_resources.working_set
setuptools_path = ws.find(
pkg_resources.Requirement.parse('setuptools')).location
# Fix sys.path here as easy_install.pth added before PYTHONPATH
cmd = [sys.executable, '-c',
'import sys; sys.path[0:0] = [%r]; ' % setuptools_path +
'from setuptools.command.easy_install import main; main()',
'-mZqNxd', tmpeggs]
find_links = os.environ.get(
'bootstrap-testing-find-links',
options.find_links or
('http://downloads.buildout.org/'
if options.accept_buildout_test_releases else None)
)
if find_links:
cmd.extend(['-f', find_links])
requirement = 'zc.buildout'
version = options.buildout_version
if version is None and not options.accept_buildout_test_releases:
# Figure out the most recent final version of zc.buildout.
import setuptools.package_index
_final_parts = '*final-', '*final'
def _final_version(parsed_version):
try:
return not parsed_version.is_prerelease
except AttributeError:
# Older setuptools
for part in parsed_version:
if (part[:1] == '*') and (part not in _final_parts):
return False
return True
index = setuptools.package_index.PackageIndex(
search_path=[setuptools_path])
if find_links:
index.add_find_links((find_links,))
req = pkg_resources.Requirement.parse(requirement)
if index.obtain(req) is not None:
best = []
bestv = None
for dist in index[req.project_name]:
distv = dist.parsed_version
if _final_version(distv):
if bestv is None or distv > bestv:
best = [dist]
bestv = distv
elif distv == bestv:
best.append(dist)
if best:
best.sort()
version = best[-1].version
if version:
requirement = '=='.join((requirement, version))
cmd.append(requirement)
import subprocess
if subprocess.call(cmd) != 0:
raise Exception(
"Failed to execute command:\n%s" % repr(cmd)[1:-1])
######################################################################
# Import and run buildout
ws.add_entry(tmpeggs)
ws.require(requirement)
import zc.buildout.buildout
if not [a for a in args if '=' not in a]:
args.append('bootstrap')
# if -c was provided, we push it back into args for buildout' main function
if options.config_file is not None:
args[0:0] = ['-c', options.config_file]
zc.buildout.buildout.main(args)
shutil.rmtree(tmpeggs)
doc/conf.py
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...@@ -231,7 +231,6 @@ autodoc_member_order = 'bysource' ...@@ -231,7 +231,6 @@ autodoc_member_order = 'bysource'
autodoc_default_flags = [ autodoc_default_flags = [
'members', 'members',
'undoc-members', 'undoc-members',
'inherited-members',
'show-inheritance', 'show-inheritance',
] ]
......
doc/py_api.rst
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...@@ -22,8 +22,8 @@ Summary ...@@ -22,8 +22,8 @@ Summary
bob.math.kullback_leibler bob.math.kullback_leibler
bob.math.linsolve bob.math.linsolve
bob.math.linsolve_cg_sympos bob.math.linsolve_cg_sympos
bob.math.linsolve_sympos bob.math.linsolve_sympos
bob.math.norminv bob.math.norminv
bob.math.pavx bob.math.pavx
bob.math.pavxWidth bob.math.pavxWidth
bob.math.pavxWidthHeight bob.math.pavxWidthHeight
...@@ -35,3 +35,4 @@ Details ...@@ -35,3 +35,4 @@ Details
.. automodule:: bob.math .. automodule:: bob.math
:members: :members:
:inherited-members:
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