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WIP: First attempt to approach the issue

Tiago de Freitas Pereira requested to merge big-issue-106 into master
  1. Removed the loading and saving functions via HDF5 in the C++ and in the python API

  2. Implemented the methods to_dict and from_dict for the Machine

  3. Test cases

  4. [black]

BIC and GFK machines are still missing

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