Initial commit

.gitignore

+*~
+*.swp
+*.pyc
+bin
+eggs
+parts
+.installed.cfg
+.mr.developer.cfg
+*.egg-info
+src
+develop-eggs
+sphinx
+test*
+submit*
+log*
+results*
+*.png
+drgan-*

.gitlab-ci.yml

+# This build file heavily uses template features from YAML so it is generic
+# enough for any Bob project. Don't modify it unless you know what you're
+# doing.
+
+
+# Definition of our build pipeline
+stages:
+  - build
+  - test
+  - docs
+  - wheels
+  - deploy
+
+
+# ---------
+# Templates
+# ---------
+
+# Template for the build stage
+# Needs to run on all supported architectures, platforms and python versions
+.build_template: &build_job
+  stage: build
+  before_script:
+    - git clean -ffdx
+    - mkdir _ci
+    - curl --silent "https://gitlab.idiap.ch/bob/bob.admin/raw/master/gitlab/install.sh" > _ci/install.sh
+    - chmod 755 _ci/install.sh
+    - ./_ci/install.sh _ci #updates
+    - ./_ci/before_build.sh
+  script:
+    - ./_ci/build.sh
+  after_script:
+    - ./_ci/after_build.sh
+  artifacts:
+    expire_in: 1 week
+    paths:
+      - _ci/
+      - dist/
+      - sphinx/
+
+
+# Template for the test stage - re-installs from uploaded wheels
+# Needs to run on all supported architectures, platforms and python versions
+.test_template: &test_job
+  stage: test
+  before_script:
+    - ./_ci/install.sh _ci #updates
+    - ./_ci/before_test.sh
+  script:
+    - ./_ci/test.sh
+  after_script:
+    - ./_ci/after_test.sh
+
+
+# Template for the wheel uploading stage
+# Needs to run against one supported architecture, platform and python version
+.wheels_template: &wheels_job
+  stage: wheels
+  environment: intranet
+  only:
+    - master
+    - /^v\d+\.\d+\.\d+([abc]\d*)?$/  # PEP-440 compliant version (tags)
+  before_script:
+    - ./_ci/install.sh _ci #updates
+    - ./_ci/before_wheels.sh
+  script:
+    - ./_ci/wheels.sh
+  after_script:
+    - ./_ci/after_wheels.sh
+
+
+# Template for (latest) documentation upload stage
+# Only one real job needs to do this
+.docs_template: &docs_job
+  stage: docs
+  environment: intranet
+  only:
+    - master
+  before_script:
+    - ./_ci/install.sh _ci #updates
+    - ./_ci/before_docs.sh
+  script:
+    - ./_ci/docs.sh
+  after_script:
+    - ./_ci/after_docs.sh
+
+
+# Template for the deployment stage - re-installs from uploaded wheels
+# Needs to run on a single architecture only
+# Will deploy your package to PyPI and other required services
+# Only runs for tags
+.deploy_template: &deploy_job
+  stage: deploy
+  environment: internet
+  only:
+    - /^v\d+\.\d+\.\d+([abc]\d*)?$/  # PEP-440 compliant version (tags)
+  except:
+    - branches
+  before_script:
+    - ./_ci/install.sh _ci #updates
+    - ./_ci/before_deploy.sh
+  script:
+    - ./_ci/deploy.sh
+  after_script:
+    - ./_ci/after_deploy.sh
+
+
+# -------------
+# Build Targets
+# -------------
+
+# Linux + Python 2.7: Builds, tests, uploads wheel and deploys (if needed)
+build_linux_27:
+  <<: *build_job
+  variables: &linux_27_build_variables
+    PYTHON_VERSION: "2.7"
+    WHEEL_TAG: "py27"
+  tags:
+    - conda-linux
+
+test_linux_27:
+  <<: *test_job
+  variables: *linux_27_build_variables
+  dependencies:
+    - build_linux_27
+  tags:
+    - conda-linux
+
+wheels_linux_27:
+  <<: *wheels_job
+  variables: *linux_27_build_variables
+  dependencies:
+    - build_linux_27
+  tags:
+    - conda-linux
+
+deploy_linux_27:
+  <<: *deploy_job
+  variables: *linux_27_build_variables
+  dependencies:
+    - build_linux_27
+  tags:
+    - conda-linux
+
+
+# Linux + Python 3.5: Builds, tests and uploads wheel
+build_linux_35:
+  <<: *build_job
+  variables: &linux_35_build_variables
+    PYTHON_VERSION: "3.5"
+    WHEEL_TAG: "py3"
+  tags:
+    - conda-linux
+
+test_linux_35:
+  <<: *test_job
+  variables: *linux_35_build_variables
+  dependencies:
+    - build_linux_35
+  tags:
+    - conda-linux
+
+wheels_linux_35:
+  <<: *wheels_job
+  variables: *linux_35_build_variables
+  dependencies:
+    - build_linux_35
+  tags:
+    - conda-linux
+
+docs_linux_35:
+  <<: *docs_job
+  variables: *linux_35_build_variables
+  dependencies:
+    - build_linux_35
+  tags:
+    - conda-linux
+
+
+# Linux + Python 3.6: Builds and tests
+build_linux_36:
+  <<: *build_job
+  variables: &linux_36_build_variables
+    PYTHON_VERSION: "3.6"
+    WHEEL_TAG: "py3"
+  tags:
+    - conda-linux
+
+test_linux_36:
+  <<: *test_job
+  variables: *linux_36_build_variables
+  dependencies:
+    - build_linux_36
+  tags:
+    - conda-linux
+
+
+# Mac OSX + Python 2.7: Builds and tests
+build_macosx_27:
+  <<: *build_job
+  variables: &macosx_27_build_variables
+    PYTHON_VERSION: "2.7"
+    WHEEL_TAG: "py27"
+  tags:
+    - conda-macosx
+
+test_macosx_27:
+  <<: *test_job
+  variables: *macosx_27_build_variables
+  dependencies:
+    - build_macosx_27
+  tags:
+    - conda-macosx
+
+
+# Mac OSX + Python 3.5: Builds and tests
+build_macosx_35:
+  <<: *build_job
+  variables: &macosx_35_build_variables
+    PYTHON_VERSION: "3.5"
+    WHEEL_TAG: "py3"
+  tags:
+    - conda-macosx
+
+test_macosx_35:
+  <<: *test_job
+  variables: *macosx_35_build_variables
+  dependencies:
+    - build_macosx_35
+  tags:
+    - conda-macosx
+
+
+# Mac OSX + Python 3.6: Builds and tests
+build_macosx_36:
+  <<: *build_job
+  variables: &macosx_36_build_variables
+    PYTHON_VERSION: "3.6"
+    WHEEL_TAG: "py3"
+  tags:
+    - conda-macosx
+
+test_macosx_36:
+  <<: *test_job
+  variables: *macosx_36_build_variables
+  dependencies:
+    - build_macosx_36
+  tags:
+    - conda-macosx

LICENSE

+Copyright (c) 2018 Idiap Research Institute, http://www.idiap.ch/
+Written by Your Name <your.email@idiap.ch>
+
+Redistribution and use in source and binary forms, with or without
+modification, are permitted provided that the following conditions are met:
+
+1. Redistributions of source code must retain the above copyright notice, this
+list of conditions and the following disclaimer.
+
+2. Redistributions in binary form must reproduce the above copyright notice,
+this list of conditions and the following disclaimer in the documentation
+and/or other materials provided with the distribution.
+
+3. Neither the name of the copyright holder nor the names of its contributors
+may be used to endorse or promote products derived from this software without
+specific prior written permission.
+
+THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND
+ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
+WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
+DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE
+FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL
+DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
+SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
+CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY,
+OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE
+OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
\ No newline at end of file

MANIFEST.in

+include README.rst buildout.cfg develop.cfg COPYING version.txt requirements.txt
+recursive-include doc *.py *.rst

README.rst

+.. vim: set fileencoding=utf-8 :
+.. Mon 29 Jan 11:17:09 CET 2018
+
+.. image:: https://img.shields.io/badge/docs-stable-yellow.svg
+   :target: https://www.idiap.ch/software/bob/docs/bob/bob.ip.pytorch_extractor/stable/index.html
+.. image:: https://img.shields.io/badge/docs-latest-orange.svg
+   :target: https://www.idiap.ch/software/bob/docs/bob/bob.ip.pytorch_extractor/master/index.html
+.. image:: https://gitlab.idiap.ch/bob/bob.ip.pytorch_extractor/badges/master/build.svg
+   :target: https://gitlab.idiap.ch/bob/bob.ip.pytorch_extractor/commits/master
+.. image:: https://gitlab.idiap.ch/bob/bob.ip.pytorch_extractor/badges/master/coverage.svg
+   :target: https://gitlab.idiap.ch/bob/bob.ip.pytorch_extractor/commits/master
+.. image:: https://img.shields.io/badge/gitlab-project-0000c0.svg
+   :target: https://gitlab.idiap.ch/bob/bob.ip.pytorch_extractor
+.. image:: https://img.shields.io/pypi/v/bob.ip.pytorch_extractor.svg
+   :target: https://pypi.python.org/pypi/bob.ip.pytorch_extractor
+
+
+=========
+ Pytorch feature extractor
+=========
+
+This package is part of the signal-processing and machine learning toolbox
+Bob_. <SHORTINTRO>
+
+
+Installation
+------------
+
+Complete Bob's `installation`_ instructions. Then, to install this package,
+run::
+
+  $ conda install bob.ip.pytorch_extractor
+
+
+Contact
+-------
+
+For questions or reporting issues to this software package, contact our
+development `mailing list`_.
+
+
+.. Place your references here:
+.. _bob: https://www.idiap.ch/software/bob
+.. _installation: https://www.idiap.ch/software/bob/install
+.. _mailing list: https://www.idiap.ch/software/bob/discuss

buildout.cfg

+; vim: set fileencoding=utf-8 :
+; Mon 29 Jan 11:16:29 CET 2018
+
+[buildout]
+parts = scripts
+develop = .
+eggs = bob.ip.pytorch_extractor
+extensions = bob.buildout
+newest = false
+verbose = true
+
+[scripts]
+recipe = bob.buildout:scripts
+dependent-scripts = true
\ No newline at end of file

doc/conf.py

+#!/usr/bin/env python
+# vim: set fileencoding=utf-8 :
+
+import os
+import sys
+import glob
+import pkg_resources
+
+
+# -- General configuration -----------------------------------------------------
+
+# If your documentation needs a minimal Sphinx version, state it here.
+needs_sphinx = '1.3'
+
+# Add any Sphinx extension module names here, as strings. They can be extensions
+# coming with Sphinx (named 'sphinx.ext.*') or your custom ones.
+extensions = [
+    'sphinx.ext.todo',
+    'sphinx.ext.coverage',
+    'sphinx.ext.ifconfig',
+    'sphinx.ext.autodoc',
+    'sphinx.ext.autosummary',
+    'sphinx.ext.doctest',
+    'sphinx.ext.graphviz',
+    'sphinx.ext.intersphinx',
+    'sphinx.ext.napoleon',
+    'sphinx.ext.viewcode',
+    #'matplotlib.sphinxext.plot_directive'
+    ]
+
+import sphinx
+if sphinx.__version__ >= "1.4.1":
+    extensions.append('sphinx.ext.imgmath')
+    imgmath_image_format = 'svg'
+else:
+    extensions.append('sphinx.ext.pngmath')
+
+# Be picky about warnings
+nitpicky = True
+
+# Ignores stuff we can't easily resolve on other project's sphinx manuals
+nitpick_ignore = []
+
+# Allows the user to override warnings from a separate file
+if os.path.exists('nitpick-exceptions.txt'):
+    for line in open('nitpick-exceptions.txt'):
+        if line.strip() == "" or line.startswith("#"):
+            continue
+        dtype, target = line.split(None, 1)
+        target = target.strip()
+        try: # python 2.x
+            target = unicode(target)
+        except NameError:
+            pass
+        nitpick_ignore.append((dtype, target))
+
+# Always includes todos
+todo_include_todos = True
+
+# Generates auto-summary automatically
+autosummary_generate = True
+
+# Create numbers on figures with captions
+numfig = True
+
+# If we are on OSX, the 'dvipng' path maybe different
+dvipng_osx = '/opt/local/libexec/texlive/binaries/dvipng'
+if os.path.exists(dvipng_osx): pngmath_dvipng = dvipng_osx
+
+# Add any paths that contain templates here, relative to this directory.
+templates_path = ['_templates']
+
+# The suffix of source filenames.
+source_suffix = '.rst'
+
+# The encoding of source files.
+#source_encoding = 'utf-8-sig'
+
+# The master toctree document.
+master_doc = 'index'
+
+# General information about the project.
+project = u'bob.ip.pytorch_extractor'
+import time
+copyright = u'%s, Idiap Research Institute' % time.strftime('%Y')
+
+# Grab the setup entry
+distribution = pkg_resources.require(project)[0]
+
+# The version info for the project you're documenting, acts as replacement for
+# |version| and |release|, also used in various other places throughout the
+# built documents.
+#
+# The short X.Y version.
+version = distribution.version
+# The full version, including alpha/beta/rc tags.
+release = distribution.version
+
+# The language for content autogenerated by Sphinx. Refer to documentation
+# for a list of supported languages.
+#language = None
+
+# There are two options for replacing |today|: either, you set today to some
+# non-false value, then it is used:
+#today = ''
+# Else, today_fmt is used as the format for a strftime call.
+#today_fmt = '%B %d, %Y'
+
+# List of patterns, relative to source directory, that match files and
+# directories to ignore when looking for source files.
+exclude_patterns = ['links.rst']
+
+# The reST default role (used for this markup: `text`) to use for all documents.
+#default_role = None
+
+# If true, '()' will be appended to :func: etc. cross-reference text.
+#add_function_parentheses = True
+
+# If true, the current module name will be prepended to all description
+# unit titles (such as .. function::).
+#add_module_names = True
+
+# If true, sectionauthor and moduleauthor directives will be shown in the
+# output. They are ignored by default.
+#show_authors = False
+
+# The name of the Pygments (syntax highlighting) style to use.
+pygments_style = 'sphinx'
+
+# A list of ignored prefixes for module index sorting.
+#modindex_common_prefix = []
+
+# Some variables which are useful for generated material
+project_variable = project.replace('.', '_')
+short_description = u''
+owner = [u'Idiap Research Institute']
+
+
+# -- Options for HTML output ---------------------------------------------------
+
+# The theme to use for HTML and HTML Help pages.  See the documentation for
+# a list of builtin themes.
+import sphinx_rtd_theme
+html_theme = 'sphinx_rtd_theme'
+
+# Theme options are theme-specific and customize the look and feel of a theme
+# further.  For a list of options available for each theme, see the
+# documentation.
+#html_theme_options = {}
+
+# Add any paths that contain custom themes here, relative to this directory.
+html_theme_path = [sphinx_rtd_theme.get_html_theme_path()]
+
+# The name for this set of Sphinx documents.  If None, it defaults to
+# "<project> v<release> documentation".
+#html_title = None
+
+# A shorter title for the navigation bar.  Default is the same as html_title.
+#html_short_title = project_variable
+
+# The name of an image file (relative to this directory) to place at the top
+# of the sidebar.
+html_logo = 'img/logo.png'
+
+# The name of an image file (within the static path) to use as favicon of the
+# docs.  This file should be a Windows icon file (.ico) being 16x16 or 32x32
+# pixels large.
+html_favicon = 'img/favicon.ico'
+
+# Add any paths that contain custom static files (such as style sheets) here,
+# relative to this directory. They are copied after the builtin static files,
+# so a file named "default.css" will overwrite the builtin "default.css".
+#html_static_path = ['_static']
+
+# If not '', a 'Last updated on:' timestamp is inserted at every page bottom,
+# using the given strftime format.
+#html_last_updated_fmt = '%b %d, %Y'
+
+# If true, SmartyPants will be used to convert quotes and dashes to
+# typographically correct entities.
+#html_use_smartypants = True
+
+# Custom sidebar templates, maps document names to template names.
+#html_sidebars = {}
+
+# Additional templates that should be rendered to pages, maps page names to
+# template names.
+#html_additional_pages = {}
+
+# If false, no module index is generated.
+#html_domain_indices = True
+
+# If false, no index is generated.
+#html_use_index = True
+
+# If true, the index is split into individual pages for each letter.
+#html_split_index = False
+
+# If true, links to the reST sources are added to the pages.
+#html_show_sourcelink = True
+
+# If true, "Created using Sphinx" is shown in the HTML footer. Default is True.
+#html_show_sphinx = True
+
+# If true, "(C) Copyright ..." is shown in the HTML footer. Default is True.
+#html_show_copyright = True
+
+# If true, an OpenSearch description file will be output, and all pages will
+# contain a <link> tag referring to it.  The value of this option must be the
+# base URL from which the finished HTML is served.
+#html_use_opensearch = ''
+
+# This is the file name suffix for HTML files (e.g. ".xhtml").
+#html_file_suffix = None
+
+# Output file base name for HTML help builder.
+htmlhelp_basename = project_variable + u'_doc'
+
+
+# -- Post configuration --------------------------------------------------------
+
+# Included after all input documents
+rst_epilog = """
+.. |project| replace:: Bob
+.. |version| replace:: %s
+.. |current-year| date:: %%Y
+""" % (version,)
+
+# Default processing flags for sphinx
+autoclass_content = 'class'
+autodoc_member_order = 'bysource'
+autodoc_default_flags = [
+  'members',
+  'undoc-members',
+  'show-inheritance',
+  ]
+
+# For inter-documentation mapping:
+from bob.extension.utils import link_documentation, load_requirements
+sphinx_requirements = "extra-intersphinx.txt"
+if os.path.exists(sphinx_requirements):
+  intersphinx_mapping = link_documentation(
+      additional_packages=['python','numpy'] + \
+          load_requirements(sphinx_requirements)
+          )
+else:
+  intersphinx_mapping = link_documentation()
+
+
+# We want to remove all private (i.e. _. or __.__) members
+# that are not in the list of accepted functions
+accepted_private_functions = ['__array__']
+
+def member_function_test(app, what, name, obj, skip, options):
+  # test if we have a private function
+  if len(name) > 1 and name[0] == '_':
+    # test if this private function should be allowed
+    if name not in accepted_private_functions:
+      # omit privat functions that are not in the list of accepted private functions
+      return skip
+    else:
+      # test if the method is documented
+      if not hasattr(obj, '__doc__') or not obj.__doc__:
+        return skip
+  return False
+
+def setup(app):
+  app.connect('autodoc-skip-member', member_function_test)

setup.py

+#!/usr/bin/env python
+# vim: set fileencoding=utf-8 :
+# Andre Anjos <andre.anjos@idiap.ch>
+# Mon 16 Apr 08:18:08 2012 CEST
+#
+# Copyright (C) Idiap Research Institute, Martigny, Switzerland
+#
+# This program is free software: you can redistribute it and/or modify
+# it under the terms of the GNU General Public License as published by
+# the Free Software Foundation, version 3 of the License.
+#
+# This program is distributed in the hope that it will be useful,
+# but WITHOUT ANY WARRANTY; without even the implied warranty of
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+# GNU General Public License for more details.
+#
+# You should have received a copy of the GNU General Public License
+# along with this program. If not, see <http://www.gnu.org/licenses/>.
+
+# This file contains the python (distutils/setuptools) instructions so your
+# package can be installed on **any** host system. It defines some basic
+# information like the package name for instance, or its homepage.
+#
+# It also defines which other packages this python package depends on and that
+# are required for this package's operation. The python subsystem will make
+# sure all dependent packages are installed or will install them for you upon
+# the installation of this package.
+#
+# The 'buildout' system we use here will go further and wrap this package in
+# such a way to create an isolated python working environment. Buildout will
+# make sure that dependencies which are not yet installed do get installed, but
+# **without** requiring administrative privileges on the host system. This
+# allows you to test your package with new python dependencies w/o requiring
+# administrative interventions.
+
+from setuptools import setup
+
+# The only thing we do in this file is to call the setup() function with all
+# parameters that define our package.
+setup(
+
+    # This is the basic information about your project. Modify all this
+    # information before releasing code publicly.
+    name = 'bob.ip.pytorch_extractor',
+    version = open("version.txt").read().rstrip(),
+    description = 'Extract features from images using (C)NN built with pyTorch',
+    url = 'https://gitlab.idiap.ch/heusch/bob.ip.pytorch_extractor',
+    license = 'BSD',
+    author = 'Guillaume Heusch',
+    author_email = 'guillaume.heusch@idiap.ch',
+    keywords = 'pytorch',
+
+    # If you have a better, long description of your package, place it on the
+    # 'doc' directory and then hook it here
+    long_description = open('README.rst').read(),
+
+    # This line is required for any distutils based packaging.
+    include_package_data = True,
+
+    # This line defines which packages should be installed when you "install"
+    # this package. All packages that are mentioned here, but are not installed
+    # on the current system will be installed locally and only visible to the
+    # scripts of this package. Don't worry - You won't need administrative
+    # privileges when using buildout.
+    install_requires = [
+        'setuptools',
+        'docopt',
+    ],
+
+    entry_points = {
+
+      # scripts should be declared using this entry:
+      'console_scripts': [
+      ],
+
+
+   },
+
+    # Classifiers are important if you plan to distribute this package through
+    # PyPI. You can find the complete list of classifiers that are valid and
+    # useful here (http://pypi.python.org/pypi?%3Aaction=list_classifiers).
+    classifiers = [
+      'Framework :: PyTorch',
+      'Development Status :: 3 - Alpha',
+      'Intended Audience :: Developers',
+      'License :: OSI Approved ::  BSD License',
+      'Natural Language :: English',
+      'Programming Language :: Python',
+      'Topic :: Scientific/Engineering :: Artificial Intelligence',
+    ],
+)

version.txt

+0.0.1