[qa] Auto-update precommit and apply on all files.

.pre-commit-config.yaml

@@ -2,23 +2,23 @@
 # See https://pre-commit.com/hooks.html for more hooks
 repos:
   - repo: https://github.com/psf/black
-    rev: 22.10.0
+    rev: 22.12.0
     hooks:
       - id: black
   - repo: https://github.com/pycqa/docformatter
-    rev: v1.5.0
+    rev: v1.6.0.rc1
     hooks:
       - id: docformatter
   - repo: https://github.com/pycqa/isort
-    rev: 5.10.1
+    rev: 5.12.0
     hooks:
       - id: isort
   - repo: https://github.com/pycqa/flake8
-    rev: 3.9.2
+    rev: 6.0.0
     hooks:
       - id: flake8
   - repo: https://github.com/pre-commit/mirrors-mypy
-    rev: v0.982
+    rev: v0.991
     hooks:
     - id: mypy
       args: [
@@ -28,12 +28,12 @@ repos:
         --ignore-missing-imports,
       ]
   - repo: https://github.com/asottile/pyupgrade
-    rev: v3.1.0
+    rev: v3.3.1
     hooks:
     - id: pyupgrade
       args: [--py38-plus]
   - repo: https://github.com/pre-commit/pre-commit-hooks
-    rev: v4.3.0
+    rev: v4.4.0
     hooks:
       - id: check-ast
       - id: check-added-large-files

src/bob/io/base/__init__.py

@@ -67,7 +67,6 @@ def open_file(filename) -> np.ndarray:
     ``filename`` : str
       The name of the file to open.
     """
-
     def check_gray(img):
         # Checking for gray scaled images
         if (
@@ -131,7 +130,6 @@ def write_file(filename, data, format="pillow") -> None:
     ``format`` : str
       The format to use to read the file. By default imageio selects the appropriate for you based on the filename and its contents
     """
-
     extension = os.path.splitext(filename)[1]  # get the extension
 
     if extension in hdf5_extensions:
@@ -171,7 +169,6 @@ def load(inputs) -> np.ndarray:
     ``data`` : :py:class:`numpy.ndarray`
       The data loaded from the given ``inputs``.
     """
-
     from collections.abc import Iterable
 
     import numpy
@@ -261,7 +258,6 @@ def _generate_features(reader, paths, same_size=False):
       features and the shape of the first feature. The rest of objects are
       the actual values in features. The features are returned in C order.
     """
-
     shape_determined = False
     for i, path in enumerate(paths):
 

src/bob/io/base/testing_utils.py

@@ -41,7 +41,6 @@ def datafile(f, module=None, path="data"):
     ``filename`` : str
       The full path of the file
     """
-
     resource = __name__ if module is None else module
     final_path = f if path is None else os.path.join(path, f)
     import pkg_resources
@@ -102,7 +101,6 @@ def extension_available(extension):
        def my_test():
          ...
     """
-
     def test_wrapper(test):
         @functools.wraps(test)
         def wrapper(*args, **kwargs):

tests/test_hdf5.py

@@ -15,7 +15,6 @@ from bob.io.base import load, save
 
 def read_write_check(data, numpy_assert=True):
     """Testing loading and save different file types."""
-
     with tempfile.NamedTemporaryFile(prefix="bobtest_", suffix=".hdf5") as f:
         save(data, f.name)
         data2 = load(f.name)