Add pre-commit

.gitignore

@@ -12,3 +12,4 @@ develop-eggs
 sphinx
 dist
 record.txt
+build

.pre-commit-config.yaml

+# See https://pre-commit.com for more information
+# See https://pre-commit.com/hooks.html for more hooks
+repos:
+  - repo: https://github.com/timothycrosley/isort
+    rev: 5.8.0
+    hooks:
+    - id: isort
+      args: [--sl, --line-length, "88"]
+  - repo: https://github.com/psf/black
+    rev: 20.8b1
+    hooks:
+      - id: black
+  - repo: https://gitlab.com/pycqa/flake8
+    rev: 3.9.0
+    hooks:
+      - id: flake8
+  - repo: https://github.com/pre-commit/pre-commit-hooks
+    rev: v3.4.0
+    hooks:
+      - id: check-ast
+      - id: check-case-conflict
+      - id: trailing-whitespace
+      - id: end-of-file-fixer
+      - id: debug-statements
+      - id: check-added-large-files
+  - repo: local
+    hooks:
+      - id: sphinx-build
+        name: sphinx build
+        entry: python -m sphinx.cmd.build
+        args: [-a, -E, -W, doc, sphinx]
+        language: system
+        files: ^doc/
+        types: [file]
+        pass_filenames: false
+      - id: sphinx-doctest
+        name: sphinx doctest
+        entry: python -m sphinx.cmd.build
+        args: [-a, -E, -b, doctest, doc, sphinx]
+        language: system
+        files: ^doc/
+        types: [file]
+        pass_filenames: false

MANIFEST.in

 include README.rst bootstrap-buildout.py buildout.cfg develop.cfg COPYING version.txt requirements.txt
 recursive-include doc *.py *.rst
-recursive-include bob/bio/gmm/test/data *.hdf5 *-dev 
+recursive-include bob/bio/gmm/test/data *.hdf5 *-dev

doc/index.rst

@@ -12,7 +12,7 @@ This package is part of the ``bob.bio`` packages, which provide open source tool
 In this package, algorithms for executing experiments based on Gaussian Mixture Models are provided, including scripts to run the training procedures of the Expectation-Maximization loops in parallel.
 
 For more detailed information about the structure of the ``bob.bio`` packages, please refer to the documentation of :ref:`bob.bio.base <bob.bio.base>`.
-Particularly, the installation of this and other ``bob.bio`` packages, please read the :ref:`bob.bio.base.installation`.
+Particularly, the installation of this and other ``bob.bio`` packages, please read the installation_.
 
 In the following, we provide more detailed information about the particularities of this package only.
 

doc/links.rst

+.. author: Yannick Dayer <yannick.dayer@idiap.ch>
+.. date: Wed 16 Jun 2021 13:50:12 UTC+02
+
+.. This file contains all links we use for documentation in a centralized place
+
+.. _idiap: http://www.idiap.ch
+.. _gitlab: http://gitlab.idiap.ch/bob
+.. _bob: http://www.idiap.ch/software/bob
+.. _installation: https://www.idiap.ch/software/bob/install

test-requirements.txt

 bob.db.atnt  # for test purposes
-bob.io.image # for test purposes
\ No newline at end of file
+bob.io.image # for test purposes

version.txt

-4.0.1b0
\ No newline at end of file
+4.0.1b0