Resolve "The documentation does not mention usage of single configuration files"

Closes #78 (closed)

@andre.anjos, @amohammadi Please verify that I haven't written anything wrong.

If you want to update some of the phrases, please go ahead. Let me see the changes before merging, though.

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• 9b43055e - Documented configuration file as the default way of running experiments; other…

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unmarked as a Work In Progress

changed the description

assigned to @amohammadi

assigned to @mguenther

@mguenther thank you for putting the time to fix this. I have some small comments but besides that this is awesome!

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• 81a2d543 - Fixed documentation

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• 88268621 - Changed example experiment in documentation

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assigned to @amohammadi

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• 830489b3 - Fixed last occurrence of command line option to variable

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resolved all discussions

mentioned in commit e1659aed

Thank you @mguenther

merged