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Issue 8 remove database configuration

Tiago de Freitas Pereira requested to merge issue-8-remove-database-configuration into master

This merge request sediments what we have discussed along the week. Basically I removed bob.bio.db package and move the BioDatabase and BioFile classes to bob.bio.base. I will branch the bob.nightlies to better do the integration tests.

I will leave this merge request open, just to not forget

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