[qa] Autoupdate pre-commit and apply on all files.

.pre-commit-config.yaml

doc/code_samples/pipeline_example.py

src/bob/bio/base/algorithm/__init__.py

src/bob/bio/base/database/csv_database.py

src/bob/bio/base/database/database.py

src/bob/bio/base/database/filelist/__init__.py

src/bob/bio/base/database/filelist/models.py

src/bob/bio/base/database/filelist/query.py

src/bob/bio/base/extractor/Extractor.py

src/bob/bio/base/pipelines/entry_points.py

src/bob/bio/base/pipelines/pipelines.py

src/bob/bio/base/pipelines/score_post_processor.py

src/bob/bio/base/pipelines/score_writers.py

src/bob/bio/base/pipelines/wrappers.py

src/bob/bio/base/preprocessor/Preprocessor.py

src/bob/bio/base/script/commands.py

src/bob/bio/base/script/pipeline_transform.py

src/bob/bio/base/script/resources.py

src/bob/bio/base/transformers/__init__.py

src/bob/bio/base/transformers/extractor.py