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bob
bob.bio.base
Commits
10f2493c
Commit
10f2493c
authored
8 years ago
by
Amir Mohammadi
Committed by
Tiago de Freitas Pereira
8 years ago
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Revert "use the File.load method if possible."
This reverts commit
11a7e229
.
parent
753d3f93
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1 merge request
!37
Issue 8 remove database configuration
Changes
2
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2 changed files
bob/bio/base/tools/FileSelector.py
+0
-4
0 additions, 4 deletions
bob/bio/base/tools/FileSelector.py
bob/bio/base/tools/preprocessor.py
+3
-7
3 additions, 7 deletions
bob/bio/base/tools/preprocessor.py
with
3 additions
and
11 deletions
bob/bio/base/tools/FileSelector.py
+
0
−
4
View file @
10f2493c
...
...
@@ -110,10 +110,6 @@ class FileSelector:
"""
Returns the list of original data that can be used for preprocessing.
"""
return
self
.
database
.
original_file_names
(
self
.
database
.
all_files
(
groups
=
groups
))
def
original_data_list_files
(
self
,
groups
=
None
):
"""
Returns the list of original data that can be used for preprocessing.
"""
return
(
self
.
database
.
all_files
(
groups
=
groups
),
self
.
database
.
original_directory
,
self
.
database
.
original_extension
)
def
annotation_list
(
self
,
groups
=
None
):
"""
Returns the list of annotations objects.
"""
return
self
.
database
.
all_files
(
groups
=
groups
)
...
...
This diff is collapsed.
Click to expand it.
bob/bio/base/tools/preprocessor.py
+
3
−
7
View file @
10f2493c
...
...
@@ -42,7 +42,7 @@ def preprocess(preprocessor, groups = None, indices = None, allow_missing_files
fs
=
FileSelector
.
instance
()
# get the file lists
data_files
,
original_directory
,
original_extension
=
fs
.
original_data_list
_files
(
groups
=
groups
)
data_files
=
fs
.
original_data_list
(
groups
=
groups
)
preprocessed_data_files
=
fs
.
preprocessed_data_list
(
groups
=
groups
)
# select a subset of keys to iterate
...
...
@@ -60,16 +60,12 @@ def preprocess(preprocessor, groups = None, indices = None, allow_missing_files
# iterate over the selected files
for
i
in
index_range
:
preprocessed_data_file
=
preprocessed_data_files
[
i
]
file_object
=
data_files
[
i
]
file_name
=
file_object
.
make_path
(
original_directory
,
original_extension
)
file_name
=
data_files
[
i
]
# check for existence
if
not
utils
.
check_file
(
preprocessed_data_file
,
force
,
1000
):
logger
.
debug
(
"
... Processing original data file
'
%s
'"
,
file_name
)
if
hasattr
(
file_object
,
'
load
'
):
data
=
file_object
.
load
(
original_directory
,
original_extension
)
else
:
data
=
preprocessor
.
read_original_data
(
file_name
)
data
=
preprocessor
.
read_original_data
(
file_name
)
# create output directory before reading the data file (is sometimes required, when relative directories are specified, especially, including a .. somewhere)
bob
.
io
.
base
.
create_directories_safe
(
os
.
path
.
dirname
(
preprocessed_data_file
))
...
...
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