update install scripts to use our own channel

install/from-scratch.sh

@@ -22,51 +22,64 @@ if [ -d ${BASEDIR}/envs/${NAME} ]; then
   fi
 fi
 
+if [ "$(uname)" == "Linux" ] && [ ${PYTHON_VERSION} == "2.7" ]; then
+    CAFFE=caffe
+else
+    CAFFE=
+fi
+
+# This is needed for toolchain. Since we just use 64-bit, I am not checking if
+# the system is 32 bit.
+export ARCH=64
+
 # For a complete list of dependencies, please read:
 # https://gitlab.idiap.ch/bob/bob/wikis/Dependencies
 echo "[>>] Creating environment ${NAME} for python ${PYTHON_VERSION} with bob dependencies..."
-${CONDA} create --yes -n ${NAME} --override-channels -c conda-forge -c defaults python=$PYTHON_VERSION \
-  boost \
+${CONDA} create --yes -n ${NAME} \
+  --override-channels \
+  -c https://www.idiap.ch/software/bob/conda \
+  -c defaults \
+  python=$PYTHON_VERSION \
+  anaconda=4.2.0 \
+  boost=1.61 \
+  ${CAFFE} \
   cmake \
   coverage \
-  cython \
-  dask \
+  cython=0.24.1 \
+  dask=0.11.0 \
   docopt \
-  ffmpeg \
-  giflib \
-  hdf5 \
-  ipdb \
+  ffmpeg=2.8.10 \
+  gcc=4.8.5 \
+  libgcc=4.8.5 \
+  giflib=5.1.4 \
+  hdf5=1.8.17 \
   ipython \
-  jpeg \
-  libblitz \
-  libmatio \
-  libpng \
-  libsvm \
-  libtiff \
-  matplotlib=1 \
-  nose \
-  numexpr \
-  numpy \
+  jpeg=8d \
+  libblitz=0.10 \
+  libmatio=1.5 \
+  libpng=1.6.22 \
+  libsvm=3.21 \
+  libtiff=4.0.6 \
+  matplotlib=1.5.3 \
+  nose=1.3.7 \
+  numexpr=2.6.1 \
+  numpy=1.11 \
   opencv=3 \
-  pillow \
-  pip \
+  pillow=3.3.1 \
+  pip=8.1.2 \
   pkg-config \
-  psutil \
-  scikit-image \
-  scikit-learn \
-  scipy \
-  sox \
-  sphinx \
+  psutil=4.3.1 \
+  scikit-image=0.12.3 \
+  scikit-learn=0.17.1 \
+  scipy=0.18.1 \
+  sox=14.4.2 \
+  sphinx=1.4.6 \
   sphinx_rtd_theme \
-  sqlalchemy \
+  sqlalchemy=1.0.13 \
   tensorflow \
+  toolchain \
   virtualenv \
-  vlfeat
-
-# Commented out while @amohammadi fixes it in conda-forge
-#if [ "$(uname)" == "Linux" ] && [ ${PYTHON_VERSION} == "2.7" ]; then
-#    ${CONDA} install --yes -n ${NAME} --override-channels -c conda-forge -c defaults caffe
-#fi
+  vlfeat=0.9.20
 
 echo "[>>] Pip-installing extra dependencies in environment ${NAME} for ${PYTHON_VERSION}..."
 source ${BASEDIR}/bin/activate ${NAME}
@@ -76,7 +89,7 @@ cyvlfeat=git+https://github.com/menpo/cyvlfeat@v0.4.5
 if [ "$(uname)" == "Linux" ]; then
   CFLAGS="-I${CONDA_PREFIX}/include" LDFLAGS="-L${CONDA_PREFIX}/lib -lvl -Wl,-rpath=${CONDA_PREFIX}/lib" pip --no-cache-dir install ${cyvlfeat}
 else
-  CFLAGS="-I${CONDA_PREFIX}/include -mmacosx-version-min=10.9" LDFLAGS="-L${CONDA_PREFIX}/lib -lvl -Wl,-headerpad_max_install_names" pip --no-cache-dir install ${cyvlfeat}
+  CFLAGS="-I${CONDA_PREFIX}/include" LDFLAGS="-L${CONDA_PREFIX}/lib -lvl" pip --no-cache-dir install ${cyvlfeat}
 fi
 
 pip --no-cache-dir install \
@@ -84,7 +97,8 @@ pip --no-cache-dir install \
   git+https://github.com/menpo/menpofit@v0.4.1 \
   schema \
   pyedflib \
-  mne
+  mne \
+  ipdb
 
 echo "[>>] Bye!"
 exit 0