Move required wheels into from-scratch (closes #30)
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assigned to @amohammadi
@andre.anjos:
[>>] Pip-installing extra dependencies in environment bob-devel-py27 for 2.7... Collecting cyvlfeat Downloading cyvlfeat-0.4.5.zip (521kB) 100% |████████████████████████████████| 522kB 5.4MB/s Installing collected packages: cyvlfeat Running setup.py install for cyvlfeat ... done Successfully installed cyvlfeat-0+unknown Collecting menpo Downloading menpo-0.7.6.tar.gz (2.4MB) 100% |████████████████████████████████| 2.4MB 11.4MB/s Collecting menpofit Downloading menpofit-0.3.0.tar.gz (92kB) 100% |████████████████████████████████| 102kB 9.9MB/s Collecting schema Downloading schema-0.6.5-py2.py3-none-any.whl Collecting pyedflib Downloading pyEDFlib-0.1.6.tar.gz (1.1MB) 100% |████████████████████████████████| 1.1MB 12.6MB/s Collecting mne Downloading mne-0.13.1.tar.gz (5.2MB) 100% |████████████████████████████████| 5.2MB 11.1MB/s Requirement already satisfied: numpy<2.0,>=1.10 in /local/conda/envs/bob-devel-py27/lib/python2.7/site-packages (from menpo) Requirement already satisfied: scipy<1.0,>=0.16 in /local/conda/envs/bob-devel-py27/lib/python2.7/site-packages (from menpo) Collecting matplotlib<2.0,>=1.4 (from menpo) Downloading matplotlib-1.5.3-cp27-cp27mu-manylinux1_x86_64.whl (13.7MB) 100% |████████████████████████████████| 13.7MB 9.7MB/s Requirement already satisfied: pillow<4.0,>=3.0 in /local/conda/envs/bob-devel-py27/lib/python2.7/site-packages (from menpo) Collecting pathlib==1.0 (from menpo) Downloading pathlib-1.0.tar.gz (49kB) 100% |████████████████████████████████| 51kB 18.6MB/s Collecting scikit-learn<0.18,>=0.17 (from menpofit) Downloading scikit_learn-0.17.1-cp27-cp27mu-manylinux1_x86_64.whl (17.6MB) 100% |████████████████████████████████| 17.6MB 11.3MB/s Requirement already satisfied: python-dateutil in /local/conda/envs/bob-devel-py27/lib/python2.7/site-packages (from matplotlib<2.0,>=1.4->menpo) Requirement already satisfied: cycler in /local/conda/envs/bob-devel-py27/lib/python2.7/site-packages/cycler-0.10.0-py2.7.egg (from matplotlib<2.0,>=1.4->menpo) Requirement already satisfied: pytz in /local/conda/envs/bob-devel-py27/lib/python2.7/site-packages (from matplotlib<2.0,>=1.4->menpo) Requirement already satisfied: pyparsing!=2.0.0,!=2.0.4,!=2.1.2,>=1.5.6 in /local/conda/envs/bob-devel-py27/lib/python2.7/site-packages (from matplotlib<2.0,>=1.4->menpo) Requirement already satisfied: six>=1.5 in /local/conda/envs/bob-devel-py27/lib/python2.7/site-packages (from python-dateutil->matplotlib<2.0,>=1.4->menpo) Installing collected packages: matplotlib, pathlib, menpo, scikit-learn, menpofit, schema, pyedflib, mne Found existing installation: matplotlib 2.0.0rc2 Uninstalling matplotlib-2.0.0rc2: Successfully uninstalled matplotlib-2.0.0rc2 Found existing installation: pathlib 1.0.1 DEPRECATION: Uninstalling a distutils installed project (pathlib) has been deprecated and will be removed in a future version. This is due to the fact that uninstalling a distutils project will only partially uninstall the project. Uninstalling pathlib-1.0.1: Successfully uninstalled pathlib-1.0.1 Running setup.py install for pathlib ... done Running setup.py install for menpo ... error Complete output from command /local/conda/envs/bob-devel-py27/bin/python -u -c "import setuptools, tokenize;__file__='/local/tmp/pip-build-MAw58y/menpo/setup.py';f=getattr(tokenize, 'open', open)(__file__);code=f.read().replace('\r\n' , '\n');f.close();exec(compile(code, __file__, 'exec'))" install --record /tmp/pip-OAjZph-record/install-record.txt --single-version-externally-managed --compile: running install running build running build_py creating build creating build/lib.linux-x86_64-2.7 creating build/lib.linux-x86_64-2.7/menpo copying menpo/__init__.py -> build/lib.linux-x86_64-2.7/menpo copying menpo/compatibility.py -> build/lib.linux-x86_64-2.7/menpo ... UPDATING build/lib.linux-x86_64-2.7/menpo/_version.py set build/lib.linux-x86_64-2.7/menpo/_version.py to '0.7.6' running build_ext building 'menpo.external.skimage._warps_cy' extension creating build/temp.linux-x86_64-2.7 creating build/temp.linux-x86_64-2.7/menpo creating build/temp.linux-x86_64-2.7/menpo/external creating build/temp.linux-x86_64-2.7/menpo/external/skimage gcc -pthread -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -I/local/conda/envs/bob-devel-py27/lib/python2.7/site-packages/numpy/core/include -I/local/conda/envs/bob-devel-py27/include/python2.7 -c menpo/external/skimage/_warps_cy.cpp -o build/temp.linux-x86_64-2.7/menpo/external/skimage/_warps_cy.o -Wno-unused-function cc1plus: warning: command line option ‘-Wstrict-prototypes’ is valid for C/ObjC but not for C++ In file included from /local/conda/envs/bob-devel-py27/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1777:0, from /local/conda/envs/bob-devel-py27/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:18, from /local/conda/envs/bob-devel-py27/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4, from menpo/external/skimage/_warps_cy.cpp:468: /local/conda/envs/bob-devel-py27/lib/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it by " \ ^ g++ -pthread -shared -L/local/conda/envs/bob-devel-py27/lib -Wl,-rpath=/local/conda/envs/bob-devel-py27/lib,--no-as-needed build/temp.linux-x86_64-2.7/menpo/external/skimage/_warps_cy.o -L/local/conda/envs/bob-devel-py27/lib -lpython2.7 -o build/lib.linux-x86_64-2.7/menpo/external/skimage/_warps_cy.so building 'menpo.transform.piecewiseaffine.fastpwa' extension creating build/temp.linux-x86_64-2.7/menpo/transform creating build/temp.linux-x86_64-2.7/menpo/transform/piecewiseaffine creating build/temp.linux-x86_64-2.7/menpo/transform/piecewiseaffine/fastpwa gcc -pthread -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -I/local/conda/envs/bob-devel-py27/lib/python2.7/site-packages/numpy/core/include -I/local/conda/envs/bob-devel-py27/include/python2.7 -c menpo/transform/piecewiseaffine/fastpwa.cpp -o build/temp.linux-x86_64-2.7/menpo/transform/piecewiseaffine/fastpwa.o -Wno-unused-function cc1plus: warning: command line option ‘-Wstrict-prototypes’ is valid for C/ObjC but not for C++ In file included from /local/conda/envs/bob-devel-py27/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1777:0, from /local/conda/envs/bob-devel-py27/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:18, from /local/conda/envs/bob-devel-py27/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4, from menpo/transform/piecewiseaffine/fastpwa.cpp:469: /local/conda/envs/bob-devel-py27/lib/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it by " \ ^ menpo/transform/piecewiseaffine/fastpwa.cpp:471:27: fatal error: ./fastpwa/pwa.h: No such file or directory compilation terminated. error: command 'gcc' failed with exit status 1 ---------------------------------------- Command "/local/conda/envs/bob-devel-py27/bin/python -u -c "import setuptools, tokenize;__file__='/local/tmp/pip-build-MAw58y/menpo/setup.py';f=getattr(tokenize, 'open', open)(__file__);code=f.read().replace('\r\n', '\n');f.close();exec(compile(code, __file__, 'exec'))" install --record /tmp/pip-OAjZph-record/install-record.txt --single-version-externally-managed --compile" failed with error code 1 in /local/tmp/pip-build-MAw58y/menpo/mentioned in commit 95b43804
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