Don't use pip, install from our conda channel

install/from-scratch.sh

@@ -48,6 +48,7 @@ ${CONDA} create --yes -n ${NAME} \
   cmake \
   coverage \
   cython=0.24.1 \
+  cyvlfeat=0.4.5 \
   dask=0.11.0 \
   docopt \
   ffmpeg=2.8.10 \
@@ -55,6 +56,7 @@ ${CONDA} create --yes -n ${NAME} \
   libgcc=4.8.5 \
   giflib=5.1.4 \
   hdf5=1.8.17 \
+  ipdb=0.10.2 \
   ipython \
   jpeg=8d \
   libblitz=0.10 \
@@ -63,6 +65,10 @@ ${CONDA} create --yes -n ${NAME} \
   libsvm=3.21 \
   libtiff=4.0.6 \
   matplotlib=1.5.3 \
+  menpo=0.7.7 \
+  menpofit=0.4.1 \
+  menpowidgets=0.2.1p3 \
+  mne=0.13.1 \
   nose=1.3.7 \
   numexpr=2.6.1 \
   numpy=1.11.1 \
@@ -70,8 +76,11 @@ ${CONDA} create --yes -n ${NAME} \
   opencv=3 \
   pillow=3.3.1 \
   pip=8.1.2 \
+  pkgtools=0.7.3 \
   pkg-config \
   psutil=4.3.1 \
+  pyedflib=0.1.6 \
+  schema=0.6.5 \
   scikit-image=0.12.3 \
   scikit-learn=0.17.1 \
   scipy=0.18.1 \
@@ -84,25 +93,5 @@ ${CONDA} create --yes -n ${NAME} \
   virtualenv \
   vlfeat=0.9.20
 
-echo "[>>] Pip-installing extra dependencies in environment ${NAME} for ${PYTHON_VERSION}..."
-source ${BASEDIR}/bin/activate ${NAME}
-
-# Cyvlfeat requires special instructions
-cyvlfeat=git+https://github.com/menpo/cyvlfeat@v0.4.5
-if [ "$(uname)" == "Linux" ]; then
-  CFLAGS="-I${CONDA_PREFIX}/include" LDFLAGS="-L${CONDA_PREFIX}/lib -lvl -Wl,-rpath=${CONDA_PREFIX}/lib" pip --no-cache-dir install ${cyvlfeat}
-else
-  CFLAGS="-I${CONDA_PREFIX}/include" LDFLAGS="-L${CONDA_PREFIX}/lib -lvl" pip --no-cache-dir install ${cyvlfeat}
-fi
-
-pip --no-cache-dir install \
-  git+https://github.com/menpo/menpo@v0.7.5 \
-  git+https://github.com/menpo/menpofit@v0.4.1 \
-  schema \
-  pyedflib \
-  mne \
-  ipdb \
-  pkgtools
-
 echo "[>>] Bye!"
 exit 0