diff --git a/.gitignore b/.gitignore
index 0292b483070c732cdf5d978d50f2c5fb7d22c6be..eb85b01c9a9584092ccfbc64d33b461b79825c19 100644
--- a/.gitignore
+++ b/.gitignore
@@ -7,21 +7,21 @@
*.pyc
*.egg-info
.nfs*
-.coverage
+.coverage*
*.DS_Store
.envrc
coverage.xml
test_results.xml
junit-coverage.xml
-environment.yaml
html/
build/
doc/api/
dist/
cache/
-venv/
+.venv/
_citools/
_work/
.mypy_cache/
.pytest_cache/
+changelog.md
.pixi/
diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml
index 33ba40b6553c65c38298a4cdb2d22005bc7ea7fa..e83d3a931f91d5124d7c9f123161c437607cb039 100644
--- a/.gitlab-ci.yml
+++ b/.gitlab-ci.yml
@@ -4,4 +4,4 @@
include:
- project: software/dev-profile
- file: /gitlab/python.yml
+ file: /gitlab/pixi.yml
diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml
index 3cc867fac796880e62b14b1e365ee43ed542920e..d760e8d333cd079bbb42e8c1a59111d8b4c9576f 100644
--- a/.pre-commit-config.yaml
+++ b/.pre-commit-config.yaml
@@ -24,13 +24,18 @@ repos:
- id: check-added-large-files
- id: check-toml
- id: check-yaml
- exclude: conda/meta.yaml
+ - id: check-json
- id: debug-statements
- id: check-case-conflict
- id: trailing-whitespace
- id: end-of-file-fixer
- id: debug-statements
- repo: https://github.com/fsfe/reuse-tool
- rev: v3.0.1
+ rev: v3.0.2
hooks:
- id: reuse
+ exclude: |
+ (?x)(
+ ^.pixi/|
+ ^.pixi.lock|
+ )
diff --git a/conda/meta.yaml b/conda/meta.yaml
deleted file mode 100644
index 7921d8cb4122385137d9a46ac632b8ccb2db1263..0000000000000000000000000000000000000000
--- a/conda/meta.yaml
+++ /dev/null
@@ -1,64 +0,0 @@
-# Copyright © 2022 Idiap Research Institute <contact@idiap.ch>
-#
-# SPDX-License-Identifier: BSD-3-Clause
-
-{% set data = load_file_data(RECIPE_DIR + '/../pyproject.toml') %}
-
-package:
- name: {{ data['project']['name'] }}
- version: {{ environ.get('PACKAGE_VERSION', environ.get('GIT_DESCRIBE_TAG')) }}
-
-source:
- path: ..
-
-build:
- noarch: python
- number: {{ environ.get('NEXT_BUILD_NUMBER', 0) }}
- run_exports:
- - {{ pin_subpackage(data['project']['name']) }}
- script:
- - "{{ PYTHON }} -m pip install {{ SRC_DIR }} -vv"
-
-requirements:
- host:
- - python >=3.10
- - pip
- - hatchling
- - versioningit
- run:
- - python >=3.10
- - pip
- # conda/mamba ecosystem dependencies
- - conda
- - conda-build
- - mamba
- - boa
- # things we depend on
- - click >=8
- - tomli
- - tomlkit
- - cookiecutter
- - packaging
- - pyyaml
- - gitpython
- - python-gitlab
- - python-dateutil
- - pytz
- - xdg
-
-test:
- source_files:
- - tests
- imports:
- - {{ data['project']['name'].replace('-','_') }}
- commands:
- - pytest -sv tests
- requires:
- - pytest {{ pytest }}
- - git
-
-about:
- home: {{ data['project']['urls']['homepage'] }}
- summary: {{ data['project']['description'] }}
- license: {{ data['project']['license'] }}
- license_family: BSD
diff --git a/doc/api.rst b/doc/api.rst
index dd98683e92d124c94d09cde2f29f0f80ed78a5e5..003abb183c022c27e1d03c69964f02c3ce27ea86 100644
--- a/doc/api.rst
+++ b/doc/api.rst
@@ -17,11 +17,8 @@ This section includes information for using the Python API of
idiap_devtools
idiap_devtools.click
- idiap_devtools.conda
idiap_devtools.logging
- idiap_devtools.profile
idiap_devtools.python
- idiap_devtools.update_pins
idiap_devtools.utils
.. autosummary::
diff --git a/doc/develop.rst b/doc/develop.rst
deleted file mode 100644
index 845e773a2d4ac0914e092a1fd87b676d82d45802..0000000000000000000000000000000000000000
--- a/doc/develop.rst
+++ /dev/null
@@ -1,203 +0,0 @@
-.. Copyright © 2022 Idiap Research Institute <contact@idiap.ch>
-..
-.. SPDX-License-Identifier: BSD-3-Clause
-
-.. _idiap-devtools.develop:
-
-===============================
- Local development of packages
-===============================
-
-We recommend you create isolated virtual environments using mamba_ (conda_) to
-develop existing or new projects, then pip_ install development requirements
-over that mamba_ environment. We offer guidance of two variants for installing
-dependencies: one exclusively using Python packages, and a second which
-installs most dependencies as conda_ packages (being able to better handle
-non-Python dependencies such as Nvidia CUDA-compiled packages). In both cases,
-the top-level package (or packages) is (are) always installed on the
-development environment through pip_ (with `the --editable option <pip-e_>`_).
-
-.. note::
-
- Pip_ may be configured with command-line options as shown below, but equally
- through environment variables, or `configuration files <pip-config_>`_. We
- leave to the developer's discretion the decision on how to best manage their
- own use of pip_.
-
-
-.. note::
-
- You may develop software against different development (c.f.
- :ref:`idiap-devtools.install.setup.profile`). In the context of these
- instructions, we assume your development profile is located at
- ``../profile``.
-
-.. tab:: pip
-
- In this variant, the latest (beta) versions of internally developed
- dependencies are fetched from our local package registry if applicable.
- Furthermore, external dependencies are fetched from PyPI and respect
- versions used on the continuous integration (CI) server. It is useful to
- reproduce bugs reported on the CI, during test builds:
-
- .. code:: sh
-
- $ git clone <PACKAGE-URL> # e.g. git clone git@gitlab.idiap.ch/software/clapp
- $ cd <PACKAGE> # e.g. cd clapp
- $ mamba create -n dev python=3.10 pip
- $ conda activate dev
- (dev) $ pip install --pre --index-url https://token:<YOUR-GITLAB-TOKEN>@gitlab.idiap.ch/api/v4/groups/software/-/packages/pypi/simple --extra-index-url https://pypi.org/simple --constraint ../profile/python/pip-constraints.txt --editable '.[qa,doc,test]'
- (dev) $ # `dev` environment is now ready, just develop
-
- .. note::
-
- If you need to install *private* packages developed through GitLab, you
- must `generate a personal token <gitlab-token_>`_ with at least access to
- the package registry (currently implemented through the ``read_api``
- privilege).
-
- Otherwise, you may suppress ``token:<YOUR-GITLAB-TOKEN>@`` from the
- index-url option above.
-
- .. tip::
-
- Optionally, you may create a standard Python virtual environment (instead of
- a conda_ virtual environment) with either venv_ or virtualenv_, and then
- apply the same instructions above to locally install dependencies and the
- package itself.
-
- The Python version in this case will match that used to create the virtual
- environment.
-
-
-.. tab:: conda
-
- In this variant, the latest (beta) versions of internally developed
- dependencies are fetched from our local conda (beta) package registry, if
- applicable. Furthermore, external dependencies are fetched from conda-forge_
- and respect versions used on the continuous integration (CI) server. It is
- useful to reproduce bugs reported on the CI, during conda-package test
- builds, or to install further non-Python dependencies required for package
- development (e.g. Nvidia CUDA-enabled packages):
-
- .. code:: sh
-
- $ git clone <PACKAGE>
- $ cd <PACKAGE>
- $ mamba run -n idiap-devtools --live-stream devtool env -vv .
- $ mamba env create -n dev -f environment.yaml
- $ conda activate dev
- (dev) $ pip install --no-build-isolation --no-dependencies --editable .
- (dev) $ # `dev` environment is now ready, just develop
-
- .. note::
-
- The application ``devtool env`` uses the ``conda`` API to parse your
- package's recipe (typically at ``conda/meta.yaml``) and
- ``pyproject.toml``, and then to search dependencies (including those for
- quality-assurance, documentation and tests, which may be not listed on
- ``conda/meta.yaml``). The installation respects CI constraints
- established on your chosen profile.
-
-
-After that step, your package will be installed and ready for use inside the
-``dev`` environment. You must activate the virtual environment everytime you
-want to further develop the package, or simply deactivate it when you branch
-off to another activity.
-
-With the development environment active, you can optionally test the package
-installation by either building its Sphinx documentation, doctests, running its
-test suite, or the quality assurance (pre-commit) checks:
-
-.. code:: sh
-
- $ conda activate dev
- (dev) $ pre-commit run --all-files # quality assurance
- (dev) $ pytest -sv tests/ # test units
- (dev) $ sphinx-build doc sphinx # documentation
- (dev) $ sphinx-build doctest doc sphinx # doctests
-
-
-Developing multiple existing packages simultaneously
-----------------------------------------------------
-
-It may happen that you may want to develop several packages against each other
-for your project. This is the case if you are changing a high-level package
-``package-a``, that in turn depends on functionality on ``package-b`` you may
-also need to adapt. While you change ``package-b``, you want to verify how
-these changes work on ``package-a``. The procedure to accomodate this is
-similar to the above, except you will git-clone and pip-install more packages:
-
-
-.. tab:: pip
-
- In this variant, the latest (beta) versions of internally developed
- dependencies are fetched from our local package registry if applicable.
- Furthermore, external dependencies are fetched from PyPI and respect
- versions used on the continuous integration (CI) server.
-
- To setup your environment, you must install packages in reverse dependence
- order, with the top-level package (``package-a`` in this example), being
- installed **by last**.
-
- .. code:: sh
-
- $ git clone <PACKAGE-A>
- $ cd <PACKAGE-A>
- $ git clone <PACKAGE-B> src/<PACKAGE-B>
- $ mamba create -n dev python=3.10 pip
- # get the constraints for the "target" development environment.
- # this is just an example:
- $ curl -O constraints.txt https://gitlab.idiap.ch/software/dev-profile/-/raw/main/python/pip-constraints.txt
- $ conda activate dev
- (dev) $ for pkg in "src/package-b" "."; do pip install --pre --index-url https://token:<YOUR-GITLAB-TOKEN>@gitlab.idiap.ch/api/v4/groups/software/-/packages/pypi/simple --extra-index-url https://pypi.org/simple --constraint constraints.txt --editable "${pkg}[qa,doc,test]"; done
- (dev) $ # `dev` environment is now ready, just develop
-
-
-.. tab:: conda
-
- In this variant, the latest (beta) versions of internally developed
- dependencies are fetched from our local conda (beta) package registry, if
- applicable. Furthermore, external dependencies are fetched from conda-forge_
- and respect versions used on the continuous integration (CI) server. It is
- useful to reproduce bugs reported on the CI, during conda-package test
- builds:
-
- .. code:: sh
-
- $ git clone <PACKAGE-A>
- $ cd <PACKAGE-A>
- $ git clone <PACKAGE-B> src/<PACKAGE-B>
- $ mamba run -n idiap-devtools --live-stream devtool env -vv src/package-b .
- $ mamba env create -n dev -f environment.yaml
- $ conda activate dev
- (dev) $ for pkg in "src/package-b" "."; do pip install --no-build-isolation --no-dependencies --editable "${pkg}"
- (dev) $ # `dev` environment is now ready, just develop
-
-
-Installing all constrained packages
------------------------------------
-
-If you plan to develop many packages together, it may be faster to first
-pre-install all (constrained) packages, to then pip-install all the individual
-packages. Because the mamba_ (or conda_) ecosystem is a superset of Python
-packages, we only provide this option:
-
-
-.. code:: sh
-
- $ mamba run -n idiap-devtools --live-stream devtool fullenv -vv
- $ mamba env create -n dev -f environment.yaml
- $ conda activate dev
- (dev) $ for pkg in "src/*"; do pip install --no-build-isolation --no-dependencies --editable "${pkg}"
-
-
-Creating new packages
----------------------
-
-To create a new package, use our `cookiecutter template
-<cookiecutter-template_>`_ and associated instructions. Do **not** copy
-another package source code, or no Xmas gifts for you...
-
-
-.. include:: links.rst
diff --git a/doc/index.rst b/doc/index.rst
index 2d241b45e87f541d0751646f5ecdd2be22b80702..0ffc07f4a8e7495c103352c94e07e5c0b794ebf4 100644
--- a/doc/index.rst
+++ b/doc/index.rst
@@ -11,7 +11,8 @@
.. todolist::
This package contains a set of small utilities to support development of Python
-packages through GitLab. It is targetted for package development at Idiap.
+packages through GitLab. It is targetted for package development at Idiap,
+however some of the commands provided can benefit a larger audience.
Documentation
@@ -21,7 +22,6 @@ Documentation
:maxdepth: 2
install
- develop
release
cli
api
diff --git a/doc/install.rst b/doc/install.rst
index 3c9122c6a77d2956d3dde070cd9e9b6378f6a7ae..e6317dfc77dd72c1e58f4c793f8f3a1fd6955f44 100644
--- a/doc/install.rst
+++ b/doc/install.rst
@@ -8,42 +8,45 @@
Installation
==============
-First install mamba_ or conda (preferably via mambaforge_, as it is already
-setup to use conda-forge_ as its main distribution channel). Then, create a
-new environment, containing this package:
+Installation may follow one of two paths: deployment or development. Choose the
+relevant tab for details on each of those installation paths.
-.. tab:: mamba/conda (RECOMMENDED)
+.. tab:: Deployment (pixi)
- .. code-block:: sh
+ Use pixi_ to add this package as a dependence:
- # installs the latest release on conda-forge:
- mamba create -n idiap-devtools idiap-devtools
+ .. code:: sh
- # OR, installs the latest development code:
- mamba create -n idiap-devtools -c https://www.idiap.ch/software/biosignal/conda/label/beta idiap-devtools
+ pixi add idiap-devtools
-.. tab:: pip
+.. tab:: Development
- .. warning::
+ Checkout the repository, and then use pixi_ to setup a full development
+ environment:
- While this is possible for testing purposes, it is **not recommended**,
- as this package depends on conda/mamba for some of its functionality. If
- you decide to do so, create a new conda/mamba environment, and
- pip-install this package on it.
+ .. code:: sh
- .. code-block:: sh
+ git clone git@gitlab.idiap.ch:software/idiap-devtools
+ pixi install --frozen
- # creates the new environment
- mamba create -n idiap-devtools python=3 pip conda mamba conda-build boa
- conda activate idiap-devtools
+ .. tip::
- # installs the latest release on PyPI:
- pip install idiap-devtools
+ The ``--frozen`` flag will ensure that the latest lock-file available
+ with sources is used. If you'd like to update the lock-file to the
+ latest set of compatible dependencies, remove that option.
- # OR, installs the latest development code:
- pip install git+https://gitlab.idiap.ch/software/idiap-devtools
+ If you use `direnv to setup your pixi environment
+ <https://pixi.sh/latest/features/environment/#using-pixi-with-direnv>`_
+ when you enter the directory containing this package, you can use a
+ ``.envrc`` file similar to this:
+
+ .. code:: sh
+
+ watch_file pixi.lock
+ export PIXI_FROZEN="true"
+ eval "$(pixi shell-hook)"
.. _idiap-devtools.install.running:
@@ -53,35 +56,11 @@ Running
This package contains a single command-line executable named ``devtool``, which
in turn contains subcommands with various actions. To run the main
-command-line tool, you must first activate the environment where it is
-installed in, and then call it on the command-line:
-
-.. code-block:: sh
-
- conda activate idiap-devtools
- devtool --help
- conda deactivate # to go back to the previous state
-
-
-It is possible to use the command ``mamba run`` (or ``conda run``, if you
-installed miniforge) to, instead, automatically prefix the execution of
-``devtool`` with an environment activation, and follow it with a deactivation.
-This allows to compact the above form into a "one-liner":
+command-line tool, use ``pixi run``:
.. code-block:: sh
- mamba run -n idiap-devtools --live-stream devtool --help
-
-
-.. warning::
-
- The ``devtool`` application requires that ``mamba``/``conda`` are available
- on the environment it executes. When using ``mamba``/``conda`` to create
- new environments, ensure you are using the mamba executable **from the
- ``base`` environment**. Creating new environments as sub-environments of
- the ``idiap-devtools`` environment may have surprising effects. A way to do
- this is to first activate the ``base`` environment, and then create the new
- environment.
+ pixi run devtool --help
.. _idiap-devtools.install.setup:
@@ -89,52 +68,6 @@ This allows to compact the above form into a "one-liner":
Setup
-----
-.. _idiap-devtools.install.setup.profile:
-
-Setting up Development Profiles
-===============================
-
-Development profiles contain a set of constants that are useful for developing,
-and interacting with projects from a particular GitLab group, or groups. They
-may contain webserver addresses, and both Python and conda installation
-constraints (package pinnings). Development profiles are GitLab repositories,
-organized in a specific way, and potentially used by various development,
-continuous integration, and administrative tools. Some examples:
-
-* Software's group: https://gitlab.idiap.ch/software/dev-profile
-* Biosignal's group: https://gitlab.idiap.ch/biosignal/software/dev-profile
-* Bob's group: https://gitlab.idiap.ch/bob/dev-profile
-
-While developing using the command-line utility ``devtool``, one or more
-commands may require you pass the base directory of a development profile.
-
-You may set a number of development shortcuts by configuring the section
-``[profiles]`` on the file ``~/.config/idiap-devtools.toml``, like so:
-
-.. code-block:: toml
-
- [profiles]
- default = "software"
- software = "~/dev-profiles/software"
- biosignal = "~/dev-profiles/biosignal"
- bob = "~/dev-profiles/bob"
- custom = "~/dev-profiles/custom-profile"
-
-.. note::
-
- The location of the configuration file respects ``${XDG_CONFIG_HOME}``,
- which defaults to ``~/.config`` in typical UNIX-style operating systems.
-
-The special ``default`` entry refers to one of the other entries in this
-section, and determines the default profile to use, if none is passed on the
-command-line. All other entries match name to a local directory where the
-profile is available.
-
-Development profiles are typically shared via GitLab as independent
-repositories. In this case, **it is your job to clone and ensure the profile
-is kept up-to-date with your group's development requirements.**
-
-
.. _idiap-devtools.install.setup.gitlab:
Automated GitLab interaction
diff --git a/doc/links.rst b/doc/links.rst
index 09bee18e897fc6978082a039b786c68a39c78d36..f9720d365b7dd95b2e29acf420b8bcb93609f48c 100644
--- a/doc/links.rst
+++ b/doc/links.rst
@@ -5,19 +5,14 @@
.. place re-used URLs here, then include this file
.. on your other RST sources.
-.. _conda: https://conda.io
.. _idiap: http://www.idiap.ch
.. _python: http://www.python.org
-.. _mamba: https://mamba.readthedocs.io/en/latest/index.html
-.. _mambaforge: https://github.com/conda-forge/miniforge#mambaforge
-.. _conda-forge: https://conda-forge.org
+.. _pip: https://pip.pypa.io/en/stable/
+.. _uv: https://github.com/astral-sh/uv
+.. _rye: https://github.com/astral-sh/rye
+.. _poetry: https://python-poetry.org
+.. _pixi: https://pixi.sh
.. _venv: https://docs.python.org/3/library/venv.html
.. _virtualenv: https://virtualenv.pypa.io/en/latest/
.. _gitlab-token: https://docs.gitlab.com/ee/user/profile/personal_access_tokens.html
-.. _cookiecutter: https://cookiecutter.readthedocs.io
-.. _cookiecutter-template: https://gitlab.idiap.ch/software/cookiecutter-idiap-pypackage
.. _semantic version numbers: https://semver.org
-
-.. _pip: https://pip.pypa.io/en/stable/
-.. _pip-e: https://pip.pypa.io/en/stable/cli/pip_install/#cmdoption-e
-.. _pip-config: https://pip.pypa.io/en/stable/topics/configuration/
diff --git a/doc/release.rst b/doc/release.rst
index 595d0845e41ea6ff81929004ee1c7af4a76e35e7..6fa6a47f90f0ab4258f9e63e649d384d72d78eb9 100644
--- a/doc/release.rst
+++ b/doc/release.rst
@@ -29,9 +29,7 @@ Use the ``--help`` flag in each command to learn more about each phase.
Pipelines for stable and non-stable (a.k.a. beta) packages may differ w.r.t.
deployment locations for various artefacts (e.g. packages and
- documentation), but also w.r.t. requirements for the version of the profile
- to be used (e.g. tagged versions non-tagged). You should check the target
- development profile CI instructions for details.
+ documentation).
Create the Changelogs
diff --git a/pixi.lock b/pixi.lock
index c80fba294aef8001dbd587d2d7c4cafe2b9d42ba..a07d8b6fb4b5933495143bc84737c9ecc7d2dd6e 100644
--- a/pixi.lock
+++ b/pixi.lock
@@ -1,27 +1,224 @@
-version: 4
+version: 5
environments:
+ build-ci:
+ channels:
+ - url: https://conda.anaconda.org/conda-forge/
+ packages:
+ linux-64:
+ - conda: https://conda.anaconda.org/conda-forge/linux-64/_libgcc_mutex-0.1-conda_forge.tar.bz2
+ - conda: https://conda.anaconda.org/conda-forge/linux-64/_openmp_mutex-4.5-2_gnu.tar.bz2
+ - conda: https://conda.anaconda.org/conda-forge/noarch/anyio-4.3.0-pyhd8ed1ab_0.conda
+ - conda: https://conda.anaconda.org/conda-forge/noarch/backports-1.0-pyhd8ed1ab_3.conda
+ - conda: https://conda.anaconda.org/conda-forge/noarch/backports.tarfile-1.0.0-pyhd8ed1ab_1.conda
+ - conda: https://conda.anaconda.org/conda-forge/linux-64/brotli-python-1.1.0-py312h30efb56_1.conda
+ - conda: https://conda.anaconda.org/conda-forge/linux-64/bzip2-1.0.8-hd590300_5.conda
+ - conda: https://conda.anaconda.org/conda-forge/linux-64/ca-certificates-2024.2.2-hbcca054_0.conda
+ - conda: https://conda.anaconda.org/conda-forge/noarch/certifi-2024.2.2-pyhd8ed1ab_0.conda
+ - conda: https://conda.anaconda.org/conda-forge/linux-64/cffi-1.16.0-py312hf06ca03_0.conda
+ - conda: https://conda.anaconda.org/conda-forge/noarch/charset-normalizer-3.3.2-pyhd8ed1ab_0.conda
+ - conda: https://conda.anaconda.org/conda-forge/noarch/click-8.1.7-unix_pyh707e725_0.conda
+ - conda: https://conda.anaconda.org/conda-forge/linux-64/cmarkgfm-0.8.0-py312h98912ed_3.conda
+ - conda: https://conda.anaconda.org/conda-forge/linux-64/cryptography-42.0.7-py312hbcc2302_0.conda
+ - conda: https://conda.anaconda.org/conda-forge/linux-64/dbus-1.13.6-h5008d03_3.tar.bz2
+ - conda: https://conda.anaconda.org/conda-forge/noarch/distlib-0.3.8-pyhd8ed1ab_0.conda
+ - conda: https://conda.anaconda.org/conda-forge/noarch/docutils-0.21.2-pyhd8ed1ab_0.conda
+ - conda: https://conda.anaconda.org/conda-forge/noarch/editables-0.5-pyhd8ed1ab_0.conda
+ - conda: https://conda.anaconda.org/conda-forge/noarch/exceptiongroup-1.2.0-pyhd8ed1ab_2.conda
+ - conda: https://conda.anaconda.org/conda-forge/linux-64/expat-2.6.2-h59595ed_0.conda
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- noarch: python
- url: https://conda.anaconda.org/conda-forge/noarch/xdg-6.0.0-pyhd8ed1ab_0.conda
- sha256: d42e6523ae7b552faf24f0b9a8d6ad95f41720fccdaa1be548abd2ece5c095e0
- md5: b484cd48062264f3cc16b58572c21411
- depends:
- - python >=3.6
- license: ISC
- purls:
- - pkg:pypi/xdg
- size: 9808
- timestamp: 1677532487640
- kind: conda
name: xz
version: 5.2.6
@@ -4710,35 +4275,6 @@ packages:
license_family: MIT
size: 89141
timestamp: 1641346969816
-- kind: conda
- name: yaml-cpp
- version: 0.8.0
- build: h13dd4ca_0
- subdir: osx-arm64
- url: https://conda.anaconda.org/conda-forge/osx-arm64/yaml-cpp-0.8.0-h13dd4ca_0.conda
- sha256: e65a52fb1c9821ba3a7a670d650314f8ff983865e77ba9f69f74e0906844943d
- md5: e783a232972a5c7dca549111e63a78b2
- depends:
- - libcxx >=15.0.7
- license: MIT
- license_family: MIT
- size: 130329
- timestamp: 1695712959746
-- kind: conda
- name: yaml-cpp
- version: 0.8.0
- build: h59595ed_0
- subdir: linux-64
- url: https://conda.anaconda.org/conda-forge/linux-64/yaml-cpp-0.8.0-h59595ed_0.conda
- sha256: a65bb5284369e548a15a44b14baf1f7ac34fa4718d7d987dd29032caba2ecf20
- md5: 965eaacd7c18eb8361fd12bb9e7a57d7
- depends:
- - libgcc-ng >=12
- - libstdcxx-ng >=12
- license: MIT
- license_family: MIT
- size: 204867
- timestamp: 1695710312002
- kind: conda
name: zipp
version: 3.17.0
diff --git a/pyproject.toml b/pyproject.toml
index 44d7c0c7fd2b69e6a88915aabe0e98ba3fafc728..8ab0054a520231e6c8fdf7d15ae3523e31fc22dc 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -24,16 +24,13 @@ classifiers = [
]
dependencies = [
"click>=8",
- "cookiecutter",
"gitpython",
"packaging",
"python-dateutil",
"python-gitlab",
"pytz",
- "pyyaml",
"tomli",
"tomlkit",
- "xdg",
]
[project.urls]
@@ -64,24 +61,22 @@ platforms = ["linux-64", "osx-arm64"]
[tool.pixi.dependencies]
click = ">=8"
-cookiecutter = "*"
gitpython = "*"
packaging = "*"
python-dateutil = "*"
python-gitlab = "*"
pytz = "*"
-pyyaml = "*"
tomli = "*"
tomlkit = "*"
-xdg = "*"
-# conda/mamba ecosystem dependencies
-conda = "*"
-conda-build = "*"
-mamba = "*"
-boa = "*"
-[tool.pixi.pypi-dependencies]
-idiap-devtools = { path = ".", editable = true, extras = ["qa", "doc", "test"] }
+[tool.pixi.feature.self.pypi-dependencies]
+idiap-devtools = { path = ".", editable = true }
+
+[tool.pixi.feature.py311.dependencies]
+python = "~=3.11.0"
+
+[tool.pixi.feature.py312.dependencies]
+python = "~=3.12.0"
[tool.pixi.feature.qa.dependencies]
pre-commit = "*"
@@ -91,6 +86,7 @@ reuse = "*"
[tool.pixi.feature.qa.tasks]
qa-install = "pre-commit install"
qa = "pre-commit run --all-files"
+qa-ci = "pre-commit run --all-files --show-diff-on-failure --verbose"
[tool.pixi.feature.doc.dependencies]
sphinx = "*"
@@ -102,7 +98,9 @@ sphinx-inline-tabs = "*"
sphinx-click = "*"
[tool.pixi.feature.doc.tasks]
-doc = "rm -rf doc/api && rm -rf html && sphinx-build -aEW doc html"
+doc-clean = "rm -rf doc/api && rm -rf html"
+doc = "sphinx-build -aEW doc html"
+doctest = "sphinx-build -aEb doctest doc html/doctest"
[tool.pixi.feature.test.dependencies]
pytest = "*"
@@ -115,8 +113,25 @@ pdbpp = "*"
test = "pytest -sv tests/"
test-ci = "pytest -sv --cov-report 'html:html/coverage' --cov-report 'xml:coverage.xml' --junitxml 'junit-coverage.xml' --ignore '.profile' tests/"
+[tool.pixi.feature.build.dependencies]
+hatch = "*"
+versioningit = "*"
+twine = "*"
+
+[tool.pixi.feature.build.tasks]
+build = "hatch build"
+check = "twine check dist/*"
+upload = "twine upload dist/*"
+
+[tool.pixi.feature.dev.dependencies]
+pdbpp = "*"
+uv = "*"
+
[tool.pixi.environments]
-default = { features = [ "qa", "doc", "test", "debug" ] }
+default = { features = ["qa", "build", "doc", "test", "dev", "py312", "self", "debug"] }
+qa-ci = { features = ["qa", "py312"] }
+build-ci = { features = ["build", "py312"] }
+test-ci-alternative = { features = ["test", "py311", "self"] }
[tool.hatch.version]
source = "versioningit"
diff --git a/src/idiap_devtools/click.py b/src/idiap_devtools/click.py
index 96d1d0e741eb45a0134b7d77b75833c73aef7e90..ab4c7c9c4ef65852538da217ab88a8e94812c06b 100644
--- a/src/idiap_devtools/click.py
+++ b/src/idiap_devtools/click.py
@@ -7,8 +7,6 @@ import typing
import click
-from .profile import get_profile_path
-
def verbosity_option(
logger: logging.Logger,
@@ -168,37 +166,3 @@ class PreserveIndentCommand(click.Command):
formatter.write_paragraph()
for line in self.description.split("\n"):
formatter.write_text(line)
-
-
-def validate_profile(_: click.Context, __: str, value: str) -> str:
- """Call back for click doing a profile name validation.
-
- Arguments:
-
- _: current command context
-
- __: The option being validated
-
- value: The value set for the option
-
-
- Returns
- -------
- The validated option value
- """
- profile_path = get_profile_path(value)
- if profile_path is None:
- raise click.BadParameter(
- "You have not provided a development profile path "
- "(-P/--profile) option or set the `default' profile at "
- "your configuration file. I need one of these to "
- "load my development constants"
- )
-
- if not (profile_path / "profile.toml").exists():
- raise click.BadParameter(
- f"Error while attempting to load the profile `{value}' from "
- f"`{str(profile_path / 'profile.toml')}' - file does not exist!"
- )
-
- return value
diff --git a/src/idiap_devtools/conda.py b/src/idiap_devtools/conda.py
deleted file mode 100644
index 83c00e30f0ba6d6d9c5549320d01486e1ad6fa4c..0000000000000000000000000000000000000000
--- a/src/idiap_devtools/conda.py
+++ /dev/null
@@ -1,119 +0,0 @@
-# Copyright © 2022 Idiap Research Institute <contact@idiap.ch>
-#
-# SPDX-License-Identifier: BSD-3-Clause
-
-import contextlib
-import copy
-import logging
-import pathlib
-import typing
-
-from .utils import uniq
-
-logger = logging.getLogger(__name__)
-
-
-@contextlib.contextmanager
-def root_logger_protection():
- """Protect the root logger against spurious (conda) manipulation.
-
- Still to verify: conda does some operations on loggers at import, so
- we may need to put the import inside this context manager too.
- """
- root_logger = logging.getLogger()
- level = root_logger.level
- handlers = copy.copy(root_logger.handlers)
-
- yield
-
- root_logger.setLevel(level)
- root_logger.handlers = handlers
-
-
-def make_conda_config(
- options: dict[str, typing.Any],
-) -> typing.Any:
- """Create a conda configuration for a build merging various sources.
-
- This function will use the conda-build API to construct a configuration by
- merging different sources of information.
-
-
- Arguments:
-
- options: A dictionary (typically read from a condarc YAML file) that
- contains build and channel options
-
- Returns
- -------
- A dictionary containing the merged configuration, as produced by
- conda-build API's ``get_or_merge_config()`` function.
- """
-
- with root_logger_protection():
- import conda_build.api
-
- from conda.utils import url_path
-
- retval = conda_build.api.get_or_merge_config(None, **options)
-
- retval.channel_urls = []
-
- for url in options["channels"]:
- # allow people to specify relative or absolute paths to local channels
- # These channels still must follow conda rules - they must have the
- # appropriate platform-specific subdir (e.g. win-64)
- url_ = pathlib.Path(url)
- if url_.is_dir():
- if not url_.is_absolute():
- url = str(url_.resolve())
- with root_logger_protection():
- url = url_path(url)
- retval.channel_urls.append(url)
-
- return retval
-
-
-def use_mambabuild():
- """Inject mamba solver to conda build API to speed up resolves."""
- # only importing this module will do the job.
-
- with root_logger_protection():
- from boa.cli.mambabuild import prepare
-
- prepare()
-
-
-def get_rendered_metadata(recipe_dir, config):
- """Render the recipe and returns the interpreted YAML file."""
- with root_logger_protection():
- import conda_build.api
-
- # use mambabuild instead
- use_mambabuild()
- return conda_build.api.render(recipe_dir, config=config)
-
-
-def get_parsed_recipe(metadata):
- """Render the recipe and returns the interpreted YAML file."""
- with root_logger_protection():
- return metadata[0][0].get_rendered_recipe_text()
-
-
-def remove_pins(deps):
- """Return dependencies without their pinned versions."""
- return [ll.split()[0] for ll in deps]
-
-
-def parse_dependencies(recipe_dir, config) -> tuple[str, list[str]]:
- """Parse dependencies in a meta.yaml file."""
- metadata = get_rendered_metadata(recipe_dir, config)
- recipe = get_parsed_recipe(metadata)
- requirements = []
- for section in ("build", "host"):
- requirements += remove_pins(recipe.get("requirements", {}).get(section, []))
- # we don't remove pins for the rest of the recipe
- requirements += recipe.get("requirements", {}).get("run", [])
- requirements += recipe.get("test", {}).get("requires", [])
-
- return recipe["package"]["name"], uniq(requirements)
diff --git a/src/idiap_devtools/gitlab/release.py b/src/idiap_devtools/gitlab/release.py
index 7e777a7e75f795010055e17d11b548559956542e..2f87d5e390c6894de661b829ca33eb3039c852a7 100644
--- a/src/idiap_devtools/gitlab/release.py
+++ b/src/idiap_devtools/gitlab/release.py
@@ -14,10 +14,6 @@ import packaging.requirements
import packaging.version
import tomlkit
-from git import Repo
-
-from idiap_devtools.profile import Profile
-
logger = logging.getLogger(__name__)
@@ -56,10 +52,14 @@ def _update_readme(
}
# matches the graphical badge in the readme's text with the given version
- doc_image_re = re.compile(r"docs\-(" + "|".join(variants) + r")\-", re.VERBOSE)
+ doc_image_re = re.compile(
+ r"docs\-(" + "|".join(variants) + r")\-", re.VERBOSE | re.IGNORECASE
+ )
# matches all other occurrences we need to handle
- branch_re = re.compile(r"/(" + "|".join(variants) + r")", re.VERBOSE)
+ branch_re = re.compile(
+ r"/(" + "|".join(variants) + r")", re.VERBOSE | re.IGNORECASE
+ )
new_contents = []
for line in contents.splitlines():
@@ -85,179 +85,30 @@ def _update_readme(
return "\n".join(new_contents) + "\n"
-def _pin_versions_of_packages_list(
- packages_list: list[str],
- dependencies_versions: list[packaging.requirements.Requirement],
-) -> list[str]:
- """Add its version to each package according to a dictionary of versions.
-
- Modifies ``packages_list`` in-place.
-
- Iterates over ``packages_list`` and sets the version to be the corresponding
- one in ``dependencies_versions``.
-
- Edge cases:
-
- **Package not in ``dependencies_versions``**: The package will not be
- pinned.
-
- **Package already has version specifier**: Raises a ``ValueError``.
-
- Arguments:
-
- packages_list: The packages to pin.
-
- dependencies_versions: All the known packages with their desired version
- pinning.
-
- Raises
- ------
- ``ValueError`` if a version in ``dependencies_versions`` conflicts with
- an already present pinning in ``packages_list``.
- """
-
- # Check that there is not the same dependency twice in the pins
- seen = set()
- for d in dependencies_versions:
- if d.name in seen:
- raise NotImplementedError(
- "Pinning with more than one specification per dependency not"
- "supported."
- )
- seen.add(d.name)
-
- # Make it easier to retrieve the dependency pin for each package.
- dependencies_dict = {d.name: d for d in dependencies_versions}
-
- results = []
-
- # package is the dependency we want to pin
- for pkg_id, package in enumerate(packages_list):
- results.append(package)
-
- # Get the dependency package version specifier if already present.
- pkg_req = packaging.requirements.Requirement(package)
-
- if pkg_req.url is not None:
- logger.warning(
- "Ignoring dependency '%s' as it is specified with a url (%s).",
- pkg_req.name,
- pkg_req.url,
- )
-
- # Retrieve this dependency's constraint Requirement object
- desired_pin = dependencies_dict.get(pkg_req.name)
-
- if desired_pin is None:
- logger.warning(
- "Dependency '%s' is not available in constraints. Skipping "
- "pinning. Consider adding this package to your dev-profile "
- "constraints file.",
- pkg_req.name,
- )
- continue
-
- # A Requirement is composed of:
- # name[extras]@ url ; marker
- # Or
- # name[extras]specifier; marker
- # Where extras and marker are optional
-
- # The following handles those different fields
-
- if desired_pin.url is not None:
- logger.info(
- "Pinning of %s will be done with a URL (%s).",
- pkg_req.name,
- desired_pin.url,
- )
- else:
- # Build the 'specs' field
- if not desired_pin.specifier:
- logger.warning(
- "Dependency '%s' has no version specifier in constraints "
- "'%s'. Skipping pinning.",
- pkg_req.name,
- desired_pin,
- )
- continue
-
- # If version specifiers are already present in that dependency
- if pkg_req.specifier:
- raise ValueError(
- f"You cannot specify a version for the dependency {pkg_req}"
- )
- specs_str = str(desired_pin.specifier)
-
- # Build the 'marker' field
- if pkg_req.marker is not None:
- raise ValueError(
- f"You can not specify a marker for the dependency {pkg_req}! "
- f"({pkg_req.marker})"
- )
- marker_str = ""
- if desired_pin.marker is not None:
- marker_str = f"; {desired_pin.marker}"
-
- # Build the 'extras' field
- if len(pkg_req.extras) > 0:
- raise ValueError(
- f"You can not specify extras for the dependency {pkg_req}! "
- f"({pkg_req.extras})"
- )
-
- extras_str = ""
- if len(desired_pin.extras) > 0:
- extras_str = f"[{','.join(desired_pin.extras)}]"
-
- # Assemble the dependency specification in one string
- if desired_pin.url is not None:
- final_str = "".join(
- (
- pkg_req.name,
- extras_str,
- "@ ",
- desired_pin.url,
- " ",
- marker_str,
- )
- )
- else:
- final_str = "".join((pkg_req.name, extras_str, specs_str, marker_str))
-
- # Replace the package specification with the pinned version
- packages_list[pkg_id] = str(packaging.requirements.Requirement(final_str))
- logger.debug("Package pinned: %s", packages_list[pkg_id])
-
- return packages_list
-
-
def _update_pyproject(
contents: str,
version: str,
default_branch: str,
update_urls: bool,
- profile: Profile | None = None,
) -> str:
"""Update contents of pyproject.toml to make it release/latest ready.
- - Sets the project.version field to the given version.
- - Pins the dependencies version to the ones in the given dev-profile.
- - Saves the dev-profile's url and commit in the pyproject.toml.
+ - Sets the project.version field to the given version, if the version is
+ not dynamic.
- Updates the documentation URLs to point specifically to the given version.
- Arguments:
-
- contents: Text of the ``pyproject.toml`` file from a package
+ Parameters
+ ----------
+ contents
+ Text of the ``pyproject.toml`` file from a package
+ version
+ Format of the version string is '#.#.#'
+ default_branch
+ The name of the default project branch to use
+ update_urls
+ If set to ``True``, then also updates the relevant URL links
+ considering the version number provided at ``version``.
- version: Format of the version string is '#.#.#'
-
- default_branch: The name of the default project branch to use
-
- update_urls: If set to ``True``, then also updates the relevant URL
- links considering the version number provided at ``version``.
-
- profile: Used to retrieve and note the current dev-profile commit.
Returns
-------
@@ -275,102 +126,46 @@ def _update_pyproject(
}
data = tomlkit.loads(contents)
+ project = data.setdefault("project", {})
- if re.match(packaging.version.VERSION_PATTERN, version, re.VERBOSE) is not None:
+ if "version" in project.get("dynamic", []):
+ logger.info("Not setting project version on pyproject.toml as it is dynamic")
+
+ elif (
+ re.match(
+ packaging.version.VERSION_PATTERN,
+ version,
+ re.VERBOSE | re.IGNORECASE,
+ )
+ is not None
+ ):
logger.info(
"Updating pyproject.toml version from '%s' to '%s'",
data.get("project", {}).get("version", "unknown version"),
version,
)
- data["project"]["version"] = version
+ project["version"] = version
else:
logger.info(
- "Not setting project version on pyproject.toml as it is "
+ f"Not setting project version on pyproject.toml as it is "
f"not PEP-440 compliant (given value: `{version}')"
)
- # Pinning of the dependencies packages version
- if profile is not None:
- dependencies_pins = profile.python_constraints()
-
- # Main dependencies
- logger.info("Pinning versions of dependencies.")
- pkg_deps = data.get("project", {}).get("dependencies", [])
- (
- _pin_versions_of_packages_list(
- packages_list=pkg_deps,
- dependencies_versions=dependencies_pins,
- ),
+ if update_urls:
+ # matches all other occurrences we need to handle
+ branch_re = re.compile(
+ r"/(" + "|".join(variants) + r")", re.VERBOSE | re.IGNORECASE
)
- # Optional dependencies
- opt_pkg_deps = data.get("project", {}).get("optional-dependencies", [])
- for pkg_group in opt_pkg_deps:
- logger.info(
- "Pinning versions of optional dependencies group `%s`.",
- pkg_group,
- )
- _pin_versions_of_packages_list(
- packages_list=opt_pkg_deps[pkg_group],
- dependencies_versions=dependencies_pins,
- )
-
- # Registering dev-profile version
- logger.info("Annotating pyproject with current dev-profile commit.")
- logger.debug("Using dev-profile at '%s'", profile._basedir) # noqa: SLF001
- profile_repo = Repo(profile._basedir) # noqa: SLF001
- if profile_repo.is_dirty():
- raise RuntimeError(
- "dev-profile was modified and is dirty! Unable to ensure a "
- "commit corresponds to the current state of that repository. "
- "Please commit and push your changes."
- )
- logger.debug("Fetching origin of dev-profile.")
- profile_repo.remotes.origin.fetch()
- logger.debug("Checking that the local commits are available on origin.")
- commits_ahead = [c for c in profile_repo.iter_commits("origin/main..HEAD")]
- if len(commits_ahead) != 0:
- raise RuntimeError(
- "Local commits of dev-profile were not pushed to origin!\n"
- f"(dev-profile HEAD is {len(commits_ahead)} commits ahead of "
- "origin).\n "
- "Please 'git push' your modifications or revert them.\n"
- "We enforce this so a dev-profile version can always be "
- "retrieved."
- )
- logger.debug("Checking we are up to date with origin.")
- commits_behind = [c for c in profile_repo.iter_commits("HEAD..origin/main")]
- if len(commits_behind) != 0:
- logger.warning(
- "Your local dev-profile is not up to date with the origin "
- "remote. It is fine as long as you know what you are doing, "
- "but you should consider 'git pull' the latest changes.\n"
- "(dev-profile HEAD is %d commits behind origin)",
- len(commits_behind),
+ # sets the various URLs
+ urls = project.setdefault("urls", {})
+ docurl = urls.get("documentation")
+ if (docurl is not None) and (branch_re.search(docurl) is not None):
+ replacement = (
+ f"/v{version}" if version is not None else f"/{default_branch}"
)
- # Actually add the dev-profile commit hash to pyproject.toml
- data["profile"] = tomlkit.table()
- data["profile"].add(
- "repository_url",
- tomlkit.item(profile_repo.remotes.origin.url).indent(4),
- )
- data["profile"].add(
- "commit_hash",
- tomlkit.item(profile_repo.commit("HEAD").hexsha).indent(4),
- )
-
- if not update_urls:
- return tomlkit.dumps(data)
-
- # matches all other occurrences we need to handle
- branch_re = re.compile(r"/(" + "|".join(variants) + r")", re.VERBOSE)
-
- # sets the various URLs
- url = data["project"].get("urls", {}).get("documentation")
- if (url is not None) and (branch_re.search(url) is not None):
- replacement = "/v%s" % version if version is not None else f"/{default_branch}"
- data["project"]["urls"]["documentation"] = branch_re.sub(replacement, url)
+ urls["documentation"] = branch_re.sub(replacement, docurl)
return tomlkit.dumps(data)
@@ -397,10 +192,11 @@ def get_latest_tag_name(
return None
# create list of tags' names but ignore the first 'v' character in each name
# also filter out non version tags
+ version_pattern_re = re.compile(
+ packaging.version.VERSION_PATTERN, re.VERBOSE | re.IGNORECASE
+ )
tag_names = [
- tag.name[1:]
- for tag in latest_tags
- if re.match(packaging.version.VERSION_PATTERN, tag.name[1:])
+ tag.name[1:] for tag in latest_tags if version_pattern_re.match(tag.name)
]
if not tag_names: # no tags were found.
return None
@@ -668,7 +464,6 @@ def release_package(
tag_name: str,
tag_comments: str,
dry_run: bool = False,
- profile: Profile | None = None,
) -> int | None:
"""Release a package.
@@ -676,20 +471,16 @@ def release_package(
such as ``README.md`` and ``pyproject.toml`` will be updated according to
the release procedures.
-
- Arguments:
-
- gitpkg: gitlab package object
-
- tag_name: The name of the release tag
-
- tag_comments_list: New annotations for this tag in a form of list
-
- dry_run: If ``True``, nothing will be committed or pushed to GitLab
-
- profile: An instance of :class:`idiap_devtools.profile.Profile` used to
- retrieve the specifiers to pin the package's dependencies in
- ``pyproject.toml``.
+ Parameters
+ ----------
+ gitpkg
+ gitlab package object
+ tag_name
+ The name of the release tag
+ tag_comments_list
+ New annotations for this tag in a form of list
+ dry_run
+ If ``True``, nothing will be committed or pushed to GitLab
Returns
-------
@@ -721,7 +512,6 @@ def release_package(
version=version_number,
default_branch=gitpkg.default_branch,
update_urls=True,
- profile=profile,
)
if dry_run:
d = _get_differences(
@@ -733,7 +523,7 @@ def release_package(
update_files_at_default_branch(
gitpkg,
{"README.md": readme_contents, "pyproject.toml": pyproject_contents},
- "Increased stable version to %s" % version_number,
+ f"Increased stable version to {version_number}",
dry_run,
)
@@ -777,7 +567,7 @@ def release_package(
"README.md": readme_contents_orig,
"pyproject.toml": pyproject_contents_latest,
},
- "Increased latest version to %s [skip ci]" % next_version_number,
+ f"Increased latest version to {next_version_number} [skip ci]",
dry_run,
)
if dry_run:
diff --git a/src/idiap_devtools/profile.py b/src/idiap_devtools/profile.py
deleted file mode 100644
index b226971f5c104214510b1a7301359dcda4520950..0000000000000000000000000000000000000000
--- a/src/idiap_devtools/profile.py
+++ /dev/null
@@ -1,331 +0,0 @@
-# Copyright © 2022 Idiap Research Institute <contact@idiap.ch>
-#
-# SPDX-License-Identifier: BSD-3-Clause
-
-import io
-import pathlib
-import typing
-
-import packaging.requirements
-import tomli
-import xdg
-import yaml
-
-from .logging import setup
-
-logger = setup(__name__)
-
-OLD_USER_CONFIGURATION = xdg.xdg_config_home() / "devtools.toml"
-"""The previous default location for the user configuration file."""
-
-USER_CONFIGURATION = xdg.xdg_config_home() / "idiap-devtools.toml"
-"""The default location for the user configuration file."""
-
-
-def load(directory: pathlib.Path) -> dict[str, typing.Any]:
- """Load a profile TOML file, returns a dictionary with contents."""
- with (directory / "profile.toml").open("rb") as f:
- return tomli.load(f)
-
-
-def get_profile_path(name: str | pathlib.Path) -> pathlib.Path | None:
- """Return the local directory of the named profile.
-
- If the input name corresponds to an existing directory, then that is
- returned. Otherwise, we lookup the said name inside the user
- configuration. If one exists, then the path pointed by that variable is
- returned. Otherwise, an exception is raised.
-
-
- Arguments:
-
- name: The name of the local profile to return - can be either an
- existing path, or any name from the user configuration file.
-
-
- Returns
- -------
- Either ``None``, if the profile cannot be found, or a verified path, if
- one is found.
- """
- path = pathlib.Path(name)
-
- if path.exists() and path.is_dir():
- logger.debug(f"Returning path to profile {str(path)}...")
- return path
-
- # makes the user move the configuration file quickly!
- if OLD_USER_CONFIGURATION.exists():
- raise RuntimeError(
- f"Move your configuration from "
- f"{str(OLD_USER_CONFIGURATION)} to {str(USER_CONFIGURATION)}, "
- f"and then re-run this application."
- )
-
- # if you get to this point, then no local directory with that name exists
- # check the user configuration for a specific key
- if USER_CONFIGURATION.exists():
- logger.debug(f"Loading user-configuration from {str(USER_CONFIGURATION)}...")
- with USER_CONFIGURATION.open("rb") as f:
- usercfg = tomli.load(f)
- else:
- usercfg = {}
-
- if name == "default":
- value = usercfg.get("profiles", {}).get("default", None)
- if value is None:
- return None
- name = value
-
- value = usercfg.get("profiles", {}).get(name, None)
- if value is None:
- logger.warning(
- f"Requested profile `{name}' is not an existing directory "
- f"or an existing profile key (may be you forgot to clone "
- f"the relevant repository or setup your configuration file?)"
- )
- return None
-
- return pathlib.Path(value).expanduser()
-
-
-class Profile:
- """A class representing the development profile.
-
- Arguments:
-
- path: The name of the local profile to return - can be either an
- existing path, or any name from the user configuration file.
- """
-
- data: dict[str, typing.Any] #: A readout of the ``profile.toml`` file
- _basedir: pathlib.Path
-
- def __init__(self, name: str | pathlib.Path):
- basedir = get_profile_path(name)
- if basedir is None:
- raise FileNotFoundError(
- f"Cannot find `profile.toml' in the input "
- f"profile path or key: `{name}' (resolved to `{basedir}')"
- )
- self._basedir = basedir
- logger.info(
- f"Loading development profile from `{name}' "
- f"(resolved to `{basedir}')..."
- )
- with (self._basedir / "profile.toml").open("rb") as f:
- self.data = tomli.load(f)
-
- def conda_config(
- self, python: str, public: bool, stable: bool
- ) -> typing.Any: # Using Any as type, as either flake8, mypy, or sphinx
- # will complain about conda otherwise. Will anyway be fixed when
- # resolving https://gitlab.idiap.ch/software/idiap-devtools/-/issues/3
- """Build the conda-configuration to use based on the profile.
-
- Arguments:
-
- python: The python version in the format "X.Y" (e.g. "3.11" or
- "3.12")
-
- private: Set to ``True`` if we should use private channels/indexes
- to lookup dependencies. Should be ``False`` otherwise
-
- stable: Set to ``True`` if we should only consider stable versions
- of packages, as opposed to pre-release ones (beta packages). Set
- to ``False`` otherwise.
-
- return_type:
- conda_build.config.Config: A dictionary containing the merged
- configuration, as produced by conda-build API's
- get_or_merge_config() function.
- """
-
- baserc = self.data.get("conda", {}).get("baserc")
- if baserc is None:
- condarc_options: dict[str, typing.Any] = dict(show_channel_urls=True)
- else:
- f = io.BytesIO(self.data["conda"]["baserc"].encode())
- condarc_options = yaml.load(f, Loader=yaml.FullLoader)
-
- channel_data = self.data.get("conda", {}).get("channels")
- privacy_key = "public" if public else "private"
- stability_key = "stable" if stable else "beta"
- if channel_data is not None:
- channels = channel_data[privacy_key][stability_key]
- else:
- channels = ["conda-forge"]
-
- condarc_options["channels"] = channels
-
- # incorporate constraints, if there are any
- constraints = self.data.get("conda", {}).get("constraints")
- if constraints is not None:
- constraints_path = self._basedir / pathlib.Path(constraints)
- condarc_options["variant_config_files"] = str(constraints_path)
-
- # detect append-file, if any
- copy_files = self.data.get("conda", {}).get("build-copy")
- if copy_files is not None:
- append_file = [k for k in copy_files if k.endswith("recipe_append.yaml")]
- if append_file:
- condarc_options["append_sections_file"] = str(
- self._basedir / append_file[0]
- )
-
- condarc_options["python"] = python
-
- conda_build_copy = self.data.get("conda", {}).get("build-copy", [])
- append_file = [k for k in conda_build_copy if k != constraints]
- append_file = append_file[0] if append_file else None
-
- from .conda import make_conda_config
-
- return make_conda_config(condarc_options)
-
- def python_indexes(self, public: bool, stable: bool) -> list[str]:
- """Return Python indexes to be used according to the current profile.
-
- Arguments:
-
- private: Set to ``True`` if we should use private channels/indexes
- to lookup dependencies. Should be ``False`` otherwise
-
- stable: Set to ``True`` if we should only consider stable versions
- of packages, as opposed to pre-release ones (beta packages). Set
- to ``False`` otherwise.
- """
- indexes = self.data.get("python", {}).get("indexes")
- privacy_key = "public" if public else "private"
- stability_key = "stable" if stable else "beta"
- if indexes is not None:
- return indexes[privacy_key][stability_key]
-
- return [] if stable else ["--pre"]
-
- def get(
- self, key: str | typing.Iterable[str], default: typing.Any = None
- ) -> typing.Any:
- """Read the contents of a certain toml profile variable."""
-
- if isinstance(key, str):
- return self.data.get(key, default)
-
- # key is a tuple of strings, iterate over the dictionary
- d = self.data
- for level in key:
- d = d.get(level)
- if d is None:
- return default
- return d
-
- def get_path(
- self,
- key: str | typing.Iterable[str],
- default: None | pathlib.Path = None,
- ) -> pathlib.Path | None:
- """Read the contents of path from the profile and resolves it.
-
- This function will search for a given profile key, consider it points
- to a path (relative or absolute) and will return that resolved path to
- the caller.
-
- Arguments:
-
- key: The key, pointing to the variable inside ``profile.toml`` that
- contains the datafile to be _load_conda_packages
-
- default: The value to return to the caller by default, if the key
- does not exist within the profile.
-
-
- Returns
- -------
- The selected profile file path, or the contents of ``default``
- otherwise.
- """
-
- path = self.get(key)
-
- if path is None:
- return default
-
- if isinstance(path, dict):
- raise KeyError(f"Key {key} does not correspond to a path")
-
- ppath = pathlib.Path(path)
-
- if not ppath.is_absolute():
- ppath = self._basedir / ppath
-
- return ppath
-
- def get_file_contents(
- self, key: str | typing.Iterable[str], default: None | str = None
- ) -> str | None:
- """Read the contents of a file from the profile.
-
- This function will search for a given profile key, consider it points
- to a filename (relative or absolute) and will read its contents,
- returning them to the caller.
-
- Arguments:
-
- key: The key, pointing to the variable inside ``profile.toml`` that
- contains the datafile to be _load_conda_packages
-
- default: The value to return to the caller by default, if the key
- does not exist within the profile.
-
-
- Returns
- -------
- The contents of the selected profile file, or the contents of
- ``default`` otherwise.
- """
-
- path = self.get_path(key)
- return path.open().read() if path is not None else default
-
- def conda_constraints(self, python: str) -> dict[str, str] | None:
- """Return a list of conda constraints given the current profile.
-
- Arguments:
-
- python: The python version in the format "X.Y" (e.g. "3.9" or
- "3.10")
- """
- content = self.get_file_contents(("conda", "constraints"))
-
- if content is None:
- return None
-
- idx1 = content.find("# AUTOMATIC PARSING START")
- idx2 = content.find("# AUTOMATIC PARSING END")
- content = content[idx1:idx2]
-
- # filter out using conda-build specific markers
- from conda_build.metadata import ns_cfg, select_lines
-
- config = self.conda_config(python, public=True, stable=True)
- content = select_lines(content, ns_cfg(config), variants_in_place=False)
-
- package_pins = yaml.safe_load(content)
-
- package_names_map = package_pins.pop("package_names_map")
-
- return {
- f"{package_names_map.get(p, p)}": f"{str(v[0]).split(' ')[0]}"
- for p, v in package_pins.items()
- }
-
- def python_constraints(
- self,
- ) -> list[packaging.requirements.Requirement] | None:
- """Return a list of Python requirements given the current profile."""
- content = self.get_file_contents(("python", "constraints"))
-
- if content is None:
- return None
-
- return [packaging.requirements.Requirement(k) for k in content.split()]
diff --git a/src/idiap_devtools/scripts/gitlab/badges.py b/src/idiap_devtools/scripts/badges.py
similarity index 97%
rename from src/idiap_devtools/scripts/gitlab/badges.py
rename to src/idiap_devtools/scripts/badges.py
index bdd9ff1545b319c96e6e71c39d378f4211b25473..b4fdadfb74adcee74406ca3830104ae83a2a3549 100644
--- a/src/idiap_devtools/scripts/gitlab/badges.py
+++ b/src/idiap_devtools/scripts/badges.py
@@ -4,8 +4,8 @@
import click
-from ...click import PreserveIndentCommand, verbosity_option
-from ...logging import setup
+from ..click import PreserveIndentCommand, verbosity_option
+from ..logging import setup
logger = setup(__name__.split(".", 1)[0])
@@ -127,8 +127,8 @@ def badges(package, update_readme, dry_run, server, **_) -> None:
import gitlab
- from ...gitlab import get_gitlab_instance
- from ...gitlab.release import update_files_at_default_branch
+ from ..gitlab import get_gitlab_instance
+ from ..gitlab.release import update_files_at_default_branch
if dry_run:
click.secho("!!!! DRY RUN MODE !!!!", fg="yellow", bold=True)
diff --git a/src/idiap_devtools/scripts/gitlab/changelog.py b/src/idiap_devtools/scripts/changelog.py
similarity index 97%
rename from src/idiap_devtools/scripts/gitlab/changelog.py
rename to src/idiap_devtools/scripts/changelog.py
index a464ad12c5ec2f7f622da15408a456f006aaac59..65bea518f3dae6abf4c0ec5064730f02efae765b 100644
--- a/src/idiap_devtools/scripts/gitlab/changelog.py
+++ b/src/idiap_devtools/scripts/changelog.py
@@ -6,8 +6,8 @@ import sys
import click
-from ...click import PreserveIndentCommand, verbosity_option
-from ...logging import setup
+from ..click import PreserveIndentCommand, verbosity_option
+from ..logging import setup
logger = setup(__name__.split(".", 1)[0])
@@ -105,8 +105,8 @@ def changelog(target, output, mode, since, **_) -> None:
import datetime
import pathlib
- from ...gitlab import get_gitlab_instance
- from ...gitlab.changelog import (
+ from ..gitlab import get_gitlab_instance
+ from ..gitlab.changelog import (
get_last_tag_date,
parse_date,
write_tags_with_commits,
diff --git a/src/idiap_devtools/scripts/cli.py b/src/idiap_devtools/scripts/cli.py
index de8593b816adfd512c8ee69bce8aeed75092693c..7c33c7301d054e86b68dd2546517319a9c526600 100644
--- a/src/idiap_devtools/scripts/cli.py
+++ b/src/idiap_devtools/scripts/cli.py
@@ -5,11 +5,17 @@
import click
from ..click import AliasedGroup
-from .env import env
-from .fullenv import fullenv
-from .gitlab import gitlab
-from .pixi import pixi
-from .update_pins import update_pins
+from ..logging import setup
+from .badges import badges
+from .changelog import changelog
+from .getpath import getpath
+from .jobs import jobs
+from .lasttag import lasttag
+from .release import release
+from .runners import runners
+from .settings import settings
+
+logger = setup(__name__.split(".", 1)[0])
@click.group(
@@ -17,13 +23,24 @@ from .update_pins import update_pins
context_settings=dict(help_option_names=["-?", "-h", "--help"]),
)
@click.version_option()
-def cli():
- """Idiap development tools - see available commands below."""
+def cli() -> None:
+ """Commands that interact directly with GitLab.
+
+ Commands defined here are supposed to interact with gitlab, and
+ add/modify/remove resources on it directly.
+
+ To avoid repetitive asking, create a configuration file as indicated
+ at :ref:`idiap-devtools.install.setup.gitlab` section of the user
+ guide.
+ """
pass
-cli.add_command(env)
-cli.add_command(fullenv)
-cli.add_command(gitlab)
-cli.add_command(pixi)
-cli.add_command(update_pins)
+cli.add_command(changelog)
+cli.add_command(release)
+cli.add_command(badges)
+cli.add_command(runners)
+cli.add_command(jobs)
+cli.add_command(getpath)
+cli.add_command(lasttag)
+cli.add_command(settings)
diff --git a/src/idiap_devtools/scripts/env.py b/src/idiap_devtools/scripts/env.py
deleted file mode 100644
index 77ea04c994cb08a847a85931599a645ad131d98a..0000000000000000000000000000000000000000
--- a/src/idiap_devtools/scripts/env.py
+++ /dev/null
@@ -1,440 +0,0 @@
-# Copyright © 2022 Idiap Research Institute <contact@idiap.ch>
-#
-# SPDX-License-Identifier: BSD-3-Clause
-
-import pathlib
-import sys
-import typing
-
-import click
-
-from ..click import PreserveIndentCommand, validate_profile, verbosity_option
-from ..logging import setup
-from ..profile import Profile
-
-logger = setup(__name__.split(".", 1)[0])
-
-
-def _load_conda_packages(
- meta: list[pathlib.Path], conda_config: typing.Any
-) -> tuple[list[pathlib.Path], list[str], list[str]]:
- """Load dependence packages by scanning conda recipes.
-
- Input entries in ``meta`` may correspond to various types of entries, out
- of which, we will not ignore in this function:
-
- * A full path to a ``meta.yaml`` file that will be scanned
- * A project directory containing a conda recipe at ``conda/meta.yaml``
- * The name of a conda package to install (condition: does not contain a
- path separator nor exists as a file or directory in the filesystem)
-
-
- Arguments:
-
- meta: List of directories, conda recipes and conda package names to parse.
-
- conda_config: Profile-dependent conda configuration to use for
- determining packages to install and constraints.
-
-
- Returns
- -------
- A list of non-consumed elements from the ``meta`` list, the list of
- parsed package names, and finally the list of dependencies from the
- parsed recipes.
- """
-
- import os
-
- from .. import conda, utils
-
- consumed = []
- parsed_packages = []
- conda_packages = []
-
- for m in meta:
- if m.name == "meta.yaml":
- # user has passed the full path to the file
- # we can consume this from the input list
- recipe_dir = str(m.parent)
- logger.info(f"Parsing conda recipe at {recipe_dir}...")
- pkg_name, pkg_deps = conda.parse_dependencies(recipe_dir, conda_config)
- logger.info(f"Added {len(pkg_deps)} packages from package '{pkg_name}'")
- parsed_packages.append(pkg_name)
- conda_packages += pkg_deps
- consumed.append(m)
-
- elif (m / "conda" / "meta.yaml").exists():
- # it is the root of a project
- # may need to parse it for python packages later on
- recipe_dir = str(m / "conda")
- logger.info(f"Parsing conda recipe at {recipe_dir}...")
- pkg_name, pkg_deps = conda.parse_dependencies(recipe_dir, conda_config)
- logger.info(f"Added {len(pkg_deps)} packages from package '{pkg_name}'")
- parsed_packages.append(pkg_name)
- conda_packages += pkg_deps
-
- elif not m.exists() and os.sep not in str(m):
- # it is a conda package name, add to list of packages to install
- # we can consume this from the input list
- logger.info(f"Adding conda package {m}...")
- conda_packages.append(str(m))
- consumed.append(m)
-
- meta = [k for k in meta if k not in consumed]
-
- # we should install all packages that have not been parsed yet
- conda_packages = [k for k in conda_packages if k not in parsed_packages]
-
- # now we sort and make it unique
- conda_packages = utils.uniq(sorted(conda_packages))
-
- logger.info(
- f"Adding {len(conda_packages)} conda packages to installation plan",
- )
- return meta, parsed_packages, conda_packages
-
-
-def _load_python_packages(
- the_profile: Profile,
- python: str,
- meta: list[pathlib.Path],
- conda_pkgs: list[str],
-) -> tuple[list[pathlib.Path], list[str], list[str]]:
- """Load dependence packages by scanning Python recipes.
-
- Input entries in ``meta`` may correspond to various types of entries, out
- of which, we will not ignore in this function:
-
- * A full path to a ``pyproject.toml`` file that will be scanned
- * A project directory containing a Python project declaration at
- ``pyproject.toml``
-
-
- Arguments:
-
- the_profile: The current development profile, that will be looked up
- for conda-to-Python package name translations.
-
- python: The version of Python to load conda constraints for
-
- meta: List of directories, and Python project definitions to scan
-
- conda_pkgs: List of conda packages that either have been parsed, or
- are dependencies of parsed recipes. We must **not** install Python
- equivalents for those.
-
-
- Returns
- -------
- A list of non-consumed elements from the ``meta`` list, the list of
- pure-Python dependencies from the parsed recipes, that are not at
- ``conda_pkgs`` and have no conda equivalents, and finally, an extension
- to the list of conda packages that can be installed that way.
- """
-
- from .. import python as pyutils
- from .. import utils
-
- parsed_packages = [k.split(" ", 1)[0] for k in conda_pkgs]
- to_python = the_profile.get(("conda", "to_python"), {})
- parsed_packages = [to_python.get(k, k) for k in parsed_packages]
-
- consumed = []
- python_packages = []
-
- for m in meta:
- if m.name == "pyproject.toml":
- # user has passed the full path to the file
- # we can consume this from the input list
- logger.info(f"Parsing Python package at {str(m)}...")
- pkg_name, pkg_deps = pyutils.dependencies_from_pyproject_toml(m)
- logger.info(
- f"Added {len(pkg_deps)} Python packages from package '{pkg_name}'",
- )
- parsed_packages.append(pkg_name)
- python_packages += pkg_deps
- consumed.append(m)
-
- elif (m / "pyproject.toml").exists():
- # it is the root of a project
- proj = m / "pyproject.toml"
- logger.info(f"Parsing Python package at {str(proj)}...")
- pkg_name, pkg_deps = pyutils.dependencies_from_pyproject_toml(proj)
- logger.info(
- f"Added {len(pkg_deps)} Python packages from package '{pkg_name}'",
- )
- parsed_packages.append(pkg_name)
- python_packages += pkg_deps
- consumed.append(m)
-
- meta = [k for k in meta if k not in consumed]
-
- # if there are equivalent conda-pinned packages, we should prefer them
- # instead of pure-Python versions without any constraints
- conda_constraints = the_profile.conda_constraints(python)
- if conda_constraints is None:
- conda_constraints = {}
-
- constrained = [k for k in python_packages if k.specifier]
- unconstrained = [k for k in python_packages if not k.specifier]
-
- has_conda = [
- f"{k.name} {conda_constraints[k.name]}"
- for k in unconstrained
- if k.name in conda_constraints
- ]
- no_conda = [k for k in unconstrained if k.name not in conda_constraints]
-
- # we should install all packages that have not been parsed yet, and have no
- # conda equivalent via Python/pip
- python_packages_str = [
- str(k) for k in constrained + no_conda if k.name not in parsed_packages
- ]
-
- # now we sort and make it unique
- python_packages_str = utils.uniq(sorted(python_packages_str))
-
- has_conda = utils.uniq(sorted(has_conda))
-
- logger.info(
- f"Adding {len(python_packages_str)} Python and {len(has_conda)} conda "
- f"packages to installation plan",
- )
- return meta, python_packages_str, has_conda
-
-
-def _simplify_conda_plan(deps: list[str]) -> list[str]:
- """Simplifies the conda package plan by removing reduntant entries."""
- from .. import utils
-
- pins_striped = [k.split()[0] for k in deps if len(k.split()) > 1]
- no_pins = [k for k in deps if len(k.split()) == 1]
-
- keep_no_pins = [k for k in no_pins if k not in pins_striped]
-
- full_pins = [k for k in deps if len(k.split()) > 1]
- return utils.uniq(sorted(keep_no_pins + full_pins))
-
-
-def _add_missing_conda_pins(
- the_profile: Profile, python: str, deps: list[str]
-) -> list[str]:
- """Add pins to unpinned packages, to respect the profile."""
-
- from .. import utils
-
- pinned_packages = the_profile.conda_constraints(python)
-
- if pinned_packages is None:
- return deps
-
- no_pins = [k for k in deps if len(k.split()) == 1 and k in pinned_packages]
-
- no_change = [k for k in deps if k not in no_pins]
-
- new_pins = [f"{k} {v}" for k, v in pinned_packages.items() if k in no_pins]
-
- return utils.uniq(sorted(no_change + new_pins))
-
-
-@click.command(
- cls=PreserveIndentCommand,
- epilog="""
-Examples:
-
- 1. Creates a conda environment installation plan for developing the currently
- checked-out package, and the development profile in ``../profile``:
-
- .. code:: sh
-
- $ git clone <package>
- $ cd <package>
- $ conda activate base
- (base) devtool env -vv .
- (base) $ mamba env create -n dev -f environment.yaml
- (base) $ conda activate dev
- (dev) $ pip install --no-build-isolation --no-dependencies --editable .
-
- You may, of course, hand-edit the output file ``environment.yaml`` to
- adjust for details, add conda or Python packages you'd like to complement
- your work environment. An example would be adding debuggers such as
- ``ipdb`` to the installation plan before calling ``mamba env create``.
-
- 2. By default, we use the native Python version of your conda installation
- as the Python version to use for the newly created environment. You may
- select a different one with `--python=X.Y'. You may also set the output
- filename with ``--output=name.yaml``, if the default does not please you:
-
- .. code:: sh
-
- $ conda activate base
- (base) devtool env -vv --python=3.12 --output=whatever-i-like.yaml .
-
- 3. To develop multiple packages you checked out, just add the meta package
- files of all packages you wish to consider, then pip-install the packages
- on teh top of the created environment, in reverse dependence order
- (e.g. package A depends on B):
-
- .. code:: sh
-
- $ mkdir dev-dir
- $ cd dev-dir
- $ git clone <repo-of-B> src/B
- $ git clone <repo-of-A> src/A
- $ conda activate base
- (base) $ devtool env -vv src/*
- (base) $ mamba env create -n dev -f environment.yaml
- (base) $ conda activate dev
- (dev) $ pip install --no-build-isolation --no-dependencies --editable "src/B"
- (dev) $ pip install --no-build-isolation --no-dependencies --editable "src/A"
-
-""",
-)
-@click.argument(
- "meta",
- nargs=-1,
- required=True,
- type=click.Path(path_type=pathlib.Path),
-)
-@click.option(
- "-P",
- "--profile",
- default="default",
- show_default=True,
- callback=validate_profile,
- help="Directory containing the development profile (and a file named "
- "profile.toml), or the name of a configuration key pointing to the "
- "development profile to use",
-)
-@click.option(
- "-p",
- "--python",
- default=("%d.%d" % sys.version_info[:2]),
- show_default=True,
- help="Version of python to build the environment for",
-)
-@click.option(
- "-u/-U",
- "--public/--no-public",
- default=True,
- help="Set this to **include** private channels/indexes on your plan. "
- "For conda packages in this case, you **must** execute this within the "
- "Idiap intranet.",
-)
-@click.option(
- "-s/-S",
- "--stable/--no-stable",
- default=False,
- help="Set this to **exclude** beta channels from your build",
-)
-@click.option(
- "-o",
- "--output",
- default="environment.yaml",
- show_default=True,
- help="The name of the environment plan file",
- type=click.Path(path_type=pathlib.Path),
-)
-@verbosity_option(logger=logger)
-def env(
- meta,
- profile,
- python,
- public,
- stable,
- output,
- **_,
-) -> None:
- """Create a development environment for one or more projects.
-
- The environment is created by scanning conda's ``meta.yaml`` and Python
- ``pyproject.toml`` files for all input projects. All input that is not an
- existing file path, is considered a supplemental conda package to be
- installed. The environment is dumped to disk in the form of a
- conda-installable YAML environment. The user may edit this file to add
- Python packages that may be of interest.
-
- To interpret ``meta.yaml`` files found on the input directories, this
- command uses the conda render API to discover all profile- constrained and
- unconstrained packages to add to the new environment.
- """
-
- import shutil
-
- import yaml
-
- # 1. loads profile data
- the_profile = Profile(profile)
-
- # 2. loads all conda package data, reset "meta" to remove consumed entries
- conda_config = the_profile.conda_config(python, public, stable)
- leftover_meta, conda_parsed, conda_packages = _load_conda_packages(
- meta, conda_config
- )
- # 3. loads all python package data, reset "meta" to remove consumed entries
- (
- leftover_meta,
- python_packages,
- extra_conda_packages,
- ) = _load_python_packages(
- the_profile, python, leftover_meta, conda_parsed + conda_packages
- )
-
- # At this point, there shouldn't be anything else to consume
- if leftover_meta:
- logger.error(
- f"Ended parsing with unconsumed entries from the command-line: "
- f"{' ,'.join(str(leftover_meta))}"
- )
-
- # Adds python on the required version
- conda_packages.append(f"python {python}")
- conda_packages += extra_conda_packages
-
- # Always append pip, if that is not the case already
- # we need it for the own package installation later on
- conda_packages.append("pip")
-
- # Performs "easy" simplification: if a package appears in two entries,
- # however one of them is a pin, keep only the pin
- conda_packages = _simplify_conda_plan(conda_packages)
-
- # Adds missing pins
- conda_packages = _add_missing_conda_pins(the_profile, python, conda_packages)
-
- # Write package installation plan, in YAML format
- data: dict[str, typing.Any] = dict(channels=conda_config.channels)
-
- if python_packages:
- conda_packages.append(
- dict( # type: ignore
- pip=the_profile.python_indexes(public, stable) + python_packages
- )
- )
-
- data["dependencies"] = conda_packages
-
- # backup previous installation plan, if one exists
- if output.exists():
- backup = output.parent / (output.name + "~")
- shutil.copy(output, backup)
-
- with output.open("w") as f:
- import math
-
- yaml.dump(data, f, width=math.inf)
-
- click.echo(
- "Run the following commands to create and prepare your development environment:"
- )
- install_cmds = [
- f"mamba env create --force -n dev -f {output}",
- "conda activate dev",
- ]
- for k in meta:
- install_cmds.append(
- f"pip install --no-build-isolation --no-dependencies --editable {k}",
- )
- for k in install_cmds:
- click.secho(k, fg="yellow", bold=True)
diff --git a/src/idiap_devtools/scripts/fullenv.py b/src/idiap_devtools/scripts/fullenv.py
deleted file mode 100644
index d60977255e7d9bad01eed519b0f923f44ad99956..0000000000000000000000000000000000000000
--- a/src/idiap_devtools/scripts/fullenv.py
+++ /dev/null
@@ -1,152 +0,0 @@
-# Copyright © 2022 Idiap Research Institute <contact@idiap.ch>
-#
-# SPDX-License-Identifier: BSD-3-Clause
-
-import pathlib
-import sys
-
-import click
-
-from ..click import PreserveIndentCommand, validate_profile, verbosity_option
-from ..logging import setup
-
-logger = setup(__name__.split(".", 1)[0])
-
-
-@click.command(
- cls=PreserveIndentCommand,
- epilog="""
-Examples:
-
- 1. Creates a development environment with all constrained packages (assumes
- the ``default`` profile is configured):
-
- .. code:: sh
-
- $ conda activate base
- (base) $ devtool fullenv -vv
- (base) $ mamba env create -n dev -f environment.yaml
- (base) $ conda activate dev
-
- 2. Creates a development environment with a specific profile:
-
- .. code:: sh
-
- $ conda activate base
- (base) $ devtool fullenv -vv -P ../profile
- (base) $ mamba env create -n dev -f environment.yaml
- (base) $ conda activate dev
-
-
- .. tip::
-
- You may hand-edit the output file ``environment.yaml`` to adjust for
- details, add conda or Python packages you'd like to complement your work
- environment. An example would be adding debuggers such as ``ipdb`` to
- the installation plan before calling ``mamba env create``.
-
-""",
-)
-@click.option(
- "-P",
- "--profile",
- default="default",
- show_default=True,
- callback=validate_profile,
- help="Directory containing the development profile (and a file named "
- "profile.toml), or the name of a configuration key pointing to the "
- "development profile to use",
-)
-@click.option(
- "-p",
- "--python",
- default=("%d.%d" % sys.version_info[:2]),
- show_default=True,
- help="Version of python to build the environment for",
-)
-@click.option(
- "-Y",
- "--only-python/--no-only-python",
- default=False,
- show_default=True,
- help="Only installs Python packages, and not conda packages "
- "(except for Python itself, and pip)",
-)
-@click.option(
- "-o",
- "--output",
- default="environment.yaml",
- show_default=True,
- help="The name of the environment plan file",
- type=click.Path(path_type=pathlib.Path),
-)
-@verbosity_option(logger=logger)
-def fullenv(
- profile,
- python,
- only_python,
- output,
- **_,
-) -> None:
- """Create a development environment with all constrained packages."""
-
- import shutil
- import typing
-
- import yaml
-
- from ..profile import Profile
-
- the_profile = Profile(profile)
-
- base_environment = dict(python=python, pip=None)
-
- if only_python:
- conda_packages = None
- else:
- conda_packages = the_profile.conda_constraints(python)
-
- if conda_packages is not None:
- conda_packages.update(base_environment)
- else:
- conda_packages = base_environment
-
- python_packages = the_profile.python_constraints()
- if python_packages is None:
- python_packages = []
-
- # filter out all conda packages already in the list
- conda_to_python = the_profile.get(("conda", "to_python"), {})
- python_to_conda = {v: k for k, v in conda_to_python.items() if k != "__ignore__"}
- python_packages = [
- k
- for k in python_packages
- if python_to_conda.get(k.name, k.name) not in conda_packages
- ]
-
- data: dict[str, typing.Any] = dict(channels=["conda-forge"])
-
- data["dependencies"] = sorted(
- [f"{k} {v}" if v is not None else k for k, v in conda_packages.items()]
- )
-
- if python_packages:
- data["dependencies"].append(dict(pip=sorted([str(k) for k in python_packages])))
-
- # backup previous installation plan, if one exists
- if output.exists():
- backup = output.parent / (output.name + "~")
- shutil.copy(output, backup)
-
- with output.open("w") as f:
- yaml.dump(data, f)
-
- click.echo(
- "Run the following commands to create and prepare your development environment:"
- )
- install_cmds = [
- f"mamba env create --force -n dev -f {output}",
- "conda activate dev",
- ]
- for k in install_cmds:
- click.secho(k, fg="yellow", bold=True)
diff --git a/src/idiap_devtools/scripts/gitlab/getpath.py b/src/idiap_devtools/scripts/getpath.py
similarity index 74%
rename from src/idiap_devtools/scripts/gitlab/getpath.py
rename to src/idiap_devtools/scripts/getpath.py
index 93b2a1ce721cb08443c384a2480ab51a31809241..1cbac577d0aaff8567f721cc72db58e3f2581cbf 100644
--- a/src/idiap_devtools/scripts/gitlab/getpath.py
+++ b/src/idiap_devtools/scripts/getpath.py
@@ -4,8 +4,8 @@
import click
-from ...click import PreserveIndentCommand, verbosity_option
-from ...logging import setup
+from ..click import PreserveIndentCommand, verbosity_option
+from ..logging import setup
logger = setup(__name__.split(".", 1)[0])
@@ -15,19 +15,12 @@ logger = setup(__name__.split(".", 1)[0])
epilog="""
Examples:
- 1. Get the file ``profile.toml`` from software/dev-profile's default branch:
-
- .. code:: sh
-
- devtool gitlab getpath software/dev-profile profile.toml
-
-
- 2. Get the directory ``gitlab`` (and eventual sub-directories) from
+ 1. Get the directory ``gitlab`` (and eventual sub-directories) from
software/dev-profile:
.. code:: sh
- devtool gitlab getpath software/dev-profile gitlab
+ devtool getpath software/dev-profile gitlab
""",
)
@@ -48,7 +41,7 @@ def getpath(package, path, output, ref, **_) -> None:
Files are downloaded and stored. Directories are recursed and fully
downloaded to the client.
"""
- from ...gitlab import download_path, get_gitlab_instance
+ from ..gitlab import download_path, get_gitlab_instance
if "/" not in package:
raise RuntimeError('PACKAGE should be specified as "group/name"')
diff --git a/src/idiap_devtools/scripts/gitlab/__init__.py b/src/idiap_devtools/scripts/gitlab/__init__.py
deleted file mode 100644
index ad63e2b3d0ac9520ca43ca2ae359766630e3fa6a..0000000000000000000000000000000000000000
--- a/src/idiap_devtools/scripts/gitlab/__init__.py
+++ /dev/null
@@ -1,42 +0,0 @@
-# Copyright © 2022 Idiap Research Institute <contact@idiap.ch>
-#
-# SPDX-License-Identifier: BSD-3-Clause
-
-import click
-
-from ...click import AliasedGroup
-from ...logging import setup
-from .badges import badges
-from .changelog import changelog
-from .getpath import getpath
-from .jobs import jobs
-from .lasttag import lasttag
-from .release import release
-from .runners import runners
-from .settings import settings
-
-logger = setup(__name__.split(".", 1)[0])
-
-
-@click.group(cls=AliasedGroup)
-def gitlab() -> None:
- """Commands that interact directly with GitLab.
-
- Commands defined here are supposed to interact with gitlab, and
- add/modify/remove resources on it directly.
-
- To avoid repetitive asking, create a configuration file as indicated
- at :ref:`idiap-devtools.install.setup.gitlab` section of the user
- guide.
- """
- pass
-
-
-gitlab.add_command(changelog)
-gitlab.add_command(release)
-gitlab.add_command(badges)
-gitlab.add_command(runners)
-gitlab.add_command(jobs)
-gitlab.add_command(getpath)
-gitlab.add_command(lasttag)
-gitlab.add_command(settings)
diff --git a/src/idiap_devtools/scripts/gitlab/jobs.py b/src/idiap_devtools/scripts/jobs.py
similarity index 93%
rename from src/idiap_devtools/scripts/gitlab/jobs.py
rename to src/idiap_devtools/scripts/jobs.py
index 94ed08f9b1146f31890300f727fe0cf56ec8e86d..7c71fa6a1aa51048e0f914554ce9e7311d8abbe4 100644
--- a/src/idiap_devtools/scripts/gitlab/jobs.py
+++ b/src/idiap_devtools/scripts/jobs.py
@@ -4,8 +4,8 @@
import click
-from ...click import PreserveIndentCommand, verbosity_option
-from ...logging import setup
+from ..click import PreserveIndentCommand, verbosity_option
+from ..logging import setup
logger = setup(__name__.split(".", 1)[0])
@@ -50,7 +50,7 @@ Examples:
@verbosity_option(logger=logger)
def jobs(status, tags, **_) -> None:
"""List jobs on a given runner identified by description."""
- from ...gitlab import get_gitlab_instance
+ from ..gitlab import get_gitlab_instance
gl = get_gitlab_instance()
diff --git a/src/idiap_devtools/scripts/gitlab/lasttag.py b/src/idiap_devtools/scripts/lasttag.py
similarity index 90%
rename from src/idiap_devtools/scripts/gitlab/lasttag.py
rename to src/idiap_devtools/scripts/lasttag.py
index e9dcfa206445bd5e41d391df1fda1709b1411d6d..b651b0f0299555a6f5d1bd1d98c39f657b206a0f 100644
--- a/src/idiap_devtools/scripts/gitlab/lasttag.py
+++ b/src/idiap_devtools/scripts/lasttag.py
@@ -4,8 +4,8 @@
import click
-from ...click import PreserveIndentCommand, verbosity_option
-from ...logging import setup
+from ..click import PreserveIndentCommand, verbosity_option
+from ..logging import setup
logger = setup(__name__.split(".", 1)[0])
@@ -36,8 +36,8 @@ def lasttag(package, **_) -> None:
"""Return the last tag information on a given PACKAGE."""
import gitlab
- from ...gitlab import get_gitlab_instance
- from ...gitlab.changelog import parse_date
+ from ..gitlab import get_gitlab_instance
+ from ..gitlab.changelog import parse_date
if "/" not in package:
raise RuntimeError('PACKAGE should be specified as "group/name"')
diff --git a/src/idiap_devtools/scripts/pixi.py b/src/idiap_devtools/scripts/pixi.py
deleted file mode 100644
index 5038231f019199a5f4a256ce83e5d93a603ca5bd..0000000000000000000000000000000000000000
--- a/src/idiap_devtools/scripts/pixi.py
+++ /dev/null
@@ -1,242 +0,0 @@
-# Copyright © 2022 Idiap Research Institute <contact@idiap.ch>
-#
-# SPDX-License-Identifier: BSD-3-Clause
-
-import pathlib
-import sys
-
-import click
-
-from ..click import PreserveIndentCommand, validate_profile, verbosity_option
-from ..logging import setup
-
-logger = setup(__name__.split(".", 1)[0])
-
-
-@click.command(
- cls=PreserveIndentCommand,
- epilog="""
-Examples:
-
- 1. Creates a **draft** pixi configuration file for a project you just checked
- out:
-
- .. code:: sh
-
- $ devtool pixi -vv .
- $ pixi run python
- ...
- >>>
-
- 2. Creates a draft pixi configuration file for a project you checked out at
- directory my-project:
-
- .. code:: sh
-
- $ devtool pixi -vv my-project
- $ cd my-project
- $ pixi run python
- ...
- >>>
-
- .. tip::
-
- You may hand-edit the output file ``pixi.toml`` to adjust for details,
- add conda or Python packages you'd like to complement your work
- environment. An example would be adding debuggers such as ``pdbpp`` to
- the installation plan.
-
-""",
-)
-@click.argument(
- "project-dir",
- nargs=1,
- required=True,
- type=click.Path(path_type=pathlib.Path),
-)
-@click.option(
- "-P",
- "--profile",
- default="default",
- show_default=True,
- callback=validate_profile,
- help="Directory containing the development profile (and a file named "
- "profile.toml), or the name of a configuration key pointing to the "
- "development profile to use",
-)
-@click.option(
- "-p",
- "--python",
- default=("%d.%d" % sys.version_info[:2]),
- show_default=True,
- help="Version of python to build the environment for",
-)
-@verbosity_option(logger=logger)
-def pixi(
- project_dir,
- profile,
- python,
- **_,
-) -> None:
- """Create a pixi recipe for a project."""
-
- import shutil
-
- import packaging.requirements
-
- from ..profile import Profile
-
- the_profile = Profile(profile)
-
- python_to_conda = {
- v: k
- for k, v in the_profile.data["conda"]["to_python"].items()
- if not k.startswith("__")
- }
-
- version = the_profile.conda_constraints(python)
- assert version is not None
-
- def _make_requirement_dict(requirements: list[str]) -> dict[str, str]:
- retval: dict[str, str] = {}
- for k in requirements:
- pr = packaging.requirements.Requirement(k)
- name = (
- pr.name if pr.name not in python_to_conda else python_to_conda[pr.name]
- )
- if pr.name in version:
- retval[name] = version[name]
- if pr.specifier:
- if name in retval:
- retval[name] = ",".join((retval[name], str(pr.specifier)))
- else:
- retval[name] = str(pr.specifier)
- retval.setdefault(name, "*")
- return retval
-
- # loads the pyproject.toml file (easy)
- pyproject = project_dir / "pyproject.toml"
- if pyproject.exists():
- import tomli
-
- pyproject = tomli.load(pyproject.open("rb"))
- else:
- raise click.ClickException(
- f"Cannot find `pyproject.toml` at directory `{str(project_dir)}`"
- )
-
- # build output TOML pixi file
- config = {}
- config["project"] = dict(
- name=pyproject["project"]["name"],
- authors=[
- f"{k['name']} <{k['email']}>"
- for k in pyproject["project"].get("authors", [])
- + pyproject["project"].get("maintainers", [])
- ],
- description=pyproject["project"]["description"],
- # license=pyproject["project"]["license"]["text"],
- readme="README.md",
- homepage=pyproject["project"]["urls"]["homepage"],
- repository=pyproject["project"]["urls"]["repository"],
- documentation=pyproject["project"]["urls"]["documentation"],
- )
-
- conda_config = the_profile.conda_config(python=python, public=True, stable=True)
- config["project"]["channels"] = conda_config.channels
- config["project"]["platforms"] = ["linux-64", "osx-arm64"]
-
- config["dependencies"] = {"python": python + ".*"}
- config["dependencies"].update(
- _make_requirement_dict(pyproject.get("project", {}).get("dependencies", []))
- )
-
- cmds = []
-
- # setup standardized build procedure
- config.setdefault("feature", {}).setdefault("build", {})["dependencies"] = (
- _make_requirement_dict(pyproject.get("build-system", {}).get("requires", []))
- )
- # add pip so that the build works
- config["feature"]["build"]["dependencies"].update(_make_requirement_dict(["pip"]))
- config["feature"]["build"]["tasks"] = dict(
- build="pip install --no-build-isolation --no-dependencies --editable ."
- )
- config.setdefault("environments", {}).setdefault("default", []).insert(0, "build")
- cmds.append("To install, run: `pixi run build`")
-
- # adds optional features
- for feature, deps in (
- pyproject.get("project", {}).get("optional-dependencies", {}).items()
- ):
- config.setdefault("feature", {}).setdefault(feature, {})["dependencies"] = (
- _make_requirement_dict(deps)
- )
-
- if "pre-commit" in config["feature"][feature]["dependencies"]:
- config["feature"][feature]["tasks"] = {
- "qa": "pre-commit run --all-files",
- "qa-install": "pre-commit install",
- }
- # this feature can be separated from the rest
- config.setdefault("environments", {}).setdefault("default", []).insert(
- 0, feature
- )
- cmds.append("To install pre-commit hook, run: `pixi run qa-install`")
- cmds.append("To run quality-assurance, run: `pixi run qa`")
-
- # if ruff is part of pre-commit configuration, then also add that
- # dependence to the qa stack
- precommit_config = project_dir / ".pre-commit-config.yaml"
- if (
- precommit_config.exists()
- and "ruff" in precommit_config.open().read()
- and "ruff" not in config["feature"][feature]["dependencies"]
- ):
- config["feature"][feature]["dependencies"]["ruff"] = "*"
- config["feature"][feature]["tasks"]["ruff"] = "ruff check"
- cmds.append("To run a simple ruff check, run: `pixi run ruff`")
-
- if "sphinx" in config["feature"][feature]["dependencies"]:
- config["feature"][feature]["tasks"] = {
- "doc": {
- "cmd": "rm -rf doc/api && rm -rf html && sphinx-build -aEW doc html",
- "depends_on": "build",
- }
- }
- # this feature needs to have the package installed
- config.setdefault("environments", {}).setdefault("default", []).insert(
- 0, feature
- )
- cmds.append("To do build docs, run: `pixi run doc`")
-
- if "pytest" in config["feature"][feature]["dependencies"]:
- config["feature"][feature]["tasks"] = {
- "test": {
- "cmd": "pytest -sv tests/",
- "depends_on": "build",
- }
- }
- # this feature needs to have the package installed
- config.setdefault("environments", {}).setdefault("default", []).insert(
- 0, feature
- )
- cmds.append("To do run test, run: `pixi run test`")
-
- # backup previous installation plan, if one exists
- output = project_dir / "pixi.toml"
- if output.exists():
- backup = output.parent / (output.name + "~")
- shutil.copy(output, backup)
-
- with output.open("w") as f:
- import tomlkit
-
- tomlkit.dump(config, f)
- click.secho(
- f"pixi configuration recorded at {str(output)}",
- fg="yellow",
- bold=True,
- )
- for k in cmds:
- click.secho(k, fg="yellow", bold=True)
diff --git a/src/idiap_devtools/scripts/gitlab/release.py b/src/idiap_devtools/scripts/release.py
similarity index 75%
rename from src/idiap_devtools/scripts/gitlab/release.py
rename to src/idiap_devtools/scripts/release.py
index 0c95f6ec9e15a44e2527951c708f867879248682..c52e9467e5fd9c1d9414d6c72653dc489d3b6931 100644
--- a/src/idiap_devtools/scripts/gitlab/release.py
+++ b/src/idiap_devtools/scripts/release.py
@@ -6,11 +6,8 @@ import typing
import click
-from idiap_devtools.click import validate_profile
-from idiap_devtools.profile import Profile, get_profile_path
-
-from ...click import PreserveIndentCommand, verbosity_option
-from ...logging import setup
+from ..click import PreserveIndentCommand, verbosity_option
+from ..logging import setup
logger = setup(__name__.split(".", 1)[0])
@@ -38,41 +35,9 @@ Examples:
devtool gitlab release -vv --dry-run changelog.md
- 3. You may also pin package dependencies upon the release, so that the
- shipped package respects a particular development profile set of pins:
-
- .. code:: sh
-
- devtool gitlab release -vv --pin-dependencies changelog.md
-
- The `default` profile is used, if set on your configuration file.
- Otherwise, you may specify it explicitly like:
-
- .. code:: sh
-
- devtool gitlab release -vv --profile=specific --pin-dependencies changelog.md
-
""",
)
@click.argument("changelog", type=click.File("rt", lazy=False))
-@click.option(
- "-P",
- "--profile",
- default="default",
- show_default=True,
- callback=validate_profile,
- help="Directory containing the development profile (and a file named "
- "profile.toml), or the name of a configuration key pointing to the "
- "development profile to use",
-)
-@click.option(
- "-p",
- "--pin-dependencies/--no-pin-dependencies",
- default=False,
- help="If set, then pin dependencies from the dev-profile on the package "
- "to be released. By default your default dev-profile is used. You may "
- "override this using the --profile option",
-)
@click.option(
"-d",
"--dry-run/--no-dry-run",
@@ -84,8 +49,6 @@ Examples:
@verbosity_option(logger=logger)
def release(
changelog: typing.TextIO,
- profile: str,
- pin_dependencies: bool,
dry_run: bool,
**_,
) -> None:
@@ -95,9 +58,7 @@ def release(
``changelog`` command), this script goes through all packages listed (and
in order):
- * Modifies ``pyproject.toml`` with the new release number and pins the
- dependencies according to the specified profile's constraints (if one
- was specified)
+ * Modifies ``pyproject.toml`` with the new release number
* Sets-up the README links to point to the correct pipeline and
documentation for the package
* Commits, tags and pushes the git project adding the changelog
@@ -108,11 +69,6 @@ def release(
pipeline versions
* Re-commits and pushes the whole with the option ``[ci skip]``.
- N.B.: When the option ``pin-dependencies`` is set, the versions of the
- dependencies in ``pyproject.toml`` will be pinned to those of the Python
- ``constraints.txt`` file available in the select development profile
- (choose using option ``--profile``).
-
The changelog is expected to have the following structure:
.. code:: markdown
@@ -144,8 +100,8 @@ def release(
import packaging.version
- from ...gitlab import get_gitlab_instance
- from ...gitlab.release import (
+ from ..gitlab import get_gitlab_instance
+ from ..gitlab.release import (
get_next_version,
release_package,
wait_for_pipeline_to_finish,
@@ -170,18 +126,6 @@ def release(
bold=True,
)
- # loads profile data
- if pin_dependencies:
- the_profile = Profile(profile)
- logger.info(
- f"Pinning dependencies from profile `{get_profile_path(profile)}'...",
- )
- else:
- the_profile = None
- logger.warning(
- "Not pinning dependencies (use --pin-dependencies to change this).",
- )
-
for pkg_number, (header, line) in enumerate(pkgs):
match = header_re.match(header)
@@ -243,7 +187,6 @@ def release(
tag_name=vtag,
tag_comments=description_text,
dry_run=dry_run,
- profile=the_profile,
)
if not dry_run:
# now, wait for the pipeline to finish, before we can release the
diff --git a/src/idiap_devtools/scripts/gitlab/runners.py b/src/idiap_devtools/scripts/runners.py
similarity index 97%
rename from src/idiap_devtools/scripts/gitlab/runners.py
rename to src/idiap_devtools/scripts/runners.py
index c1786717176336471746edec40ee8338b9c8927e..712df4691a7eff9981f8d75ca8954740eb8e9633 100644
--- a/src/idiap_devtools/scripts/gitlab/runners.py
+++ b/src/idiap_devtools/scripts/runners.py
@@ -6,8 +6,8 @@ import pathlib
import click
-from ...click import AliasedGroup, PreserveIndentCommand, verbosity_option
-from ...logging import setup
+from ..click import AliasedGroup, PreserveIndentCommand, verbosity_option
+from ..logging import setup
logger = setup(__name__.split(".", 1)[0])
@@ -64,8 +64,8 @@ def enable(name, targets, group, dry_run, **_) -> None:
at.
"""
- from ...gitlab import get_gitlab_instance
- from ...gitlab.runners import (
+ from ..gitlab import get_gitlab_instance
+ from ..gitlab.runners import (
get_project,
get_projects_from_file,
get_projects_from_group,
diff --git a/src/idiap_devtools/scripts/gitlab/settings.py b/src/idiap_devtools/scripts/settings.py
similarity index 96%
rename from src/idiap_devtools/scripts/gitlab/settings.py
rename to src/idiap_devtools/scripts/settings.py
index 56fbd72f1befa3ae7b41e6123ea1f24b4751b302..7b97ee52c86a3d90eb790ab89af639e2261328fc 100644
--- a/src/idiap_devtools/scripts/gitlab/settings.py
+++ b/src/idiap_devtools/scripts/settings.py
@@ -7,8 +7,8 @@ import typing
import click
-from ...click import PreserveIndentCommand, verbosity_option
-from ...logging import setup
+from ..click import PreserveIndentCommand, verbosity_option
+from ..logging import setup
logger = setup(__name__.split(".", 1)[0])
@@ -101,8 +101,8 @@ Examples:
def settings(projects, avatar, description, group, archive, dry_run, **_) -> None:
"""Update project settings."""
- from ...gitlab import get_gitlab_instance
- from ...gitlab.runners import (
+ from ..gitlab import get_gitlab_instance
+ from ..gitlab.runners import (
get_project,
get_projects_from_file,
get_projects_from_group,
diff --git a/src/idiap_devtools/scripts/update_pins.py b/src/idiap_devtools/scripts/update_pins.py
deleted file mode 100644
index 962bc8ea4fac3fefa5935f0d621e7a2b8ca6273e..0000000000000000000000000000000000000000
--- a/src/idiap_devtools/scripts/update_pins.py
+++ /dev/null
@@ -1,228 +0,0 @@
-# Copyright © 2022 Idiap Research Institute <contact@idiap.ch>
-#
-# SPDX-License-Identifier: BSD-3-Clause
-
-import sys
-
-import click
-
-from ..click import PreserveIndentCommand, validate_profile, verbosity_option
-from ..logging import setup
-
-logger = setup(__name__.split(".", 1)[0])
-
-
-@click.command(
- cls=PreserveIndentCommand,
- epilog="""
-Examples:
-
- 1. Updates the default constraints taking as base a Python 3.10 environment:
-
- .. code:: sh
-
- devtool update-pins --python=3.10
-
- 2. Updates the default constraints using the default Python version
- (installed on the base environment), and respecting a few provided
- constraints (manual pins):
-
- .. code:: sh
-
- devtool update-pins --python=3.10 opencv=4.5.1 pytorch=1.9
-
- 3. Updates the constraints on a checked-out profile directory:
-
- .. code:: sh
-
- devtool update-pins --python=3.10 --profile=../another-profile
-""",
-)
-@click.argument("manual_pins", nargs=-1)
-@click.option(
- "-P",
- "--profile",
- default="default",
- show_default=True,
- callback=validate_profile,
- help="Directory containing the development profile (and a file named "
- "profile.toml), or the name of a configuration key pointing to the "
- "development profile to use",
-)
-@click.option(
- "-p",
- "--python",
- default=("%d.%d" % sys.version_info[:2]),
- show_default=True,
- help="Version of python to build the environment for",
-)
-@click.option(
- "-p/-P",
- "--only-pip/--no-only-pip",
- default=False,
- help="Set this to update **only** pip constraints. The pins will "
- "then be copied from the conda-constraints to the pip one.",
-)
-@verbosity_option(logger=logger)
-def update_pins(manual_pins, profile, python, only_pip, **_) -> None:
- """Update pip/mamba/conda package constraints (requires conda).
-
- The update is done by checking-up conda-forge and trying to create
- an environment with all packages listed on the current conda
- constraints. Once an environment has been resolved, it is "copied"
- to the Python (pip) constraints file, by excluding non-Python
- packages.
- """
- import subprocess
-
- from ..profile import Profile
- from ..update_pins import (
- filter_python_packages,
- load_packages_from_conda_build_config,
- update_pip_constraints_only,
- )
-
- # 1. loads profile data
- the_profile = Profile(profile)
-
- conda_config_path = the_profile.get_path(("conda", "constraints"))
-
- if conda_config_path is None:
- click.secho(
- f"No conda-constraints at profile `{profile}' - aborting",
- bold=True,
- fg="red",
- )
- return None
-
- # 2. loads the current conda pins
- packages, package_names_map = load_packages_from_conda_build_config(
- conda_config_path, {"channels": []}
- )
-
- pip_constraints_path = the_profile.get_path(("python", "constraints"))
- conda_to_python = the_profile.get(("conda", "to_python"), {})
-
- if only_pip:
- if pip_constraints_path is None:
- click.secho(
- f"No pip-constraints at profile `{profile}' - aborting",
- bold=True,
- fg="red",
- )
- return None
-
- click.secho(
- f"Copying pins from {str(conda_config_path)} to "
- f"{str(pip_constraints_path)}...",
- bold=True,
- )
- return update_pip_constraints_only(
- conda_config_path, pip_constraints_path, conda_to_python
- )
-
- reversed_package_names_map = {v: k for k, v in package_names_map.items()}
-
- # ask mamba to create an environment with the packages
- try:
- cmd = (
- [
- "mamba",
- "create",
- "--dry-run",
- "--override-channels",
- "-c",
- "conda-forge",
- "-n",
- "temp_env",
- f"python={python}",
- ]
- + packages
- + list(manual_pins)
- )
- click.secho(
- f"Executing `{' '.join(cmd)}' to calculate a viable environment...",
- bold=True,
- )
- output = subprocess.run(cmd, capture_output=True, check=True)
-
- except subprocess.CalledProcessError as e:
- click.secho(e.output.decode(), bold=True, fg="red")
- raise e
-
- env_text = output.stdout.decode("utf-8")
- click.secho(env_text, fg="magenta")
-
- resolved_packages = []
- for line in env_text.split("\n"):
- line = line.strip()
- if line.startswith("+ "):
- values = line.split()
- name, version = values[1], values[2]
- resolved_packages.append((name, version))
-
- # we only monitor a subset of packages
- resolved_packages = sorted(
- [(p, v) for (p, v) in resolved_packages if p in packages],
- key=lambda x: (x[0], len(x[0])),
- )
-
- # write the new pinning
- click.secho(
- f"Saving {len(resolved_packages)} updated entries to "
- f"`{conda_config_path}'...",
- bold=True,
- )
-
- with conda_config_path.open("rt") as f:
- content = f.read()
-
- start = """
-# AUTOMATIC PARSING START
-# DO NOT MODIFY THIS COMMENT
-
-# list all packages with dashes or dots in their names, here:"""
- idx1 = content.find(start)
- idx2 = content.find("# AUTOMATIC PARSING END")
- pins = "\n".join(
- f'{reversed_package_names_map.get(name, name)}:\n - "{version}"'
- for name, version in resolved_packages
- )
- package_names_map_str = "\n".join(
- f" {k}: {v}" for k, v in package_names_map.items()
- )
-
- new_content = f"""{start}
-package_names_map:
-{package_names_map_str}
-
-
-{pins}
-
-"""
-
- content = content[:idx1] + new_content + content[idx2:]
- with conda_config_path.open("w") as f:
- f.write(content)
-
- if pip_constraints_path is None:
- click.secho(
- f"No pip-constraints at profile `{profile}' - not updating...",
- bold=True,
- )
- return None
-
- with pip_constraints_path.open("w") as f:
- python_packages = filter_python_packages(resolved_packages, conda_to_python)
- python_packages = sorted(
- [(p, v) for (p, v) in python_packages],
- key=lambda x: (x[0], len(x[0])),
- )
- click.secho(
- f"Saving {len(python_packages)} entries to `{pip_constraints_path}'...",
- bold=True,
- )
- constraints = [f"{name}=={version}\n" for name, version in python_packages]
- f.writelines(constraints)
-
- return None
diff --git a/src/idiap_devtools/update_pins.py b/src/idiap_devtools/update_pins.py
deleted file mode 100644
index d545cdf73f4f7901f813c9fda7d37346089dbd31..0000000000000000000000000000000000000000
--- a/src/idiap_devtools/update_pins.py
+++ /dev/null
@@ -1,121 +0,0 @@
-# Copyright © 2022 Idiap Research Institute <contact@idiap.ch>
-#
-# SPDX-License-Identifier: BSD-3-Clause
-
-import pathlib
-import typing
-
-import click
-import requests
-
-
-def load_packages_from_conda_build_config(
- conda_build_config: pathlib.Path,
- condarc_options: dict[str, typing.Any],
- with_pins: bool = False,
-) -> tuple[list[str], dict[str, str]]:
- """Load packages listed in a conda recipe."""
-
- from conda_build.metadata import ns_cfg, select_lines
-
- from .conda import make_conda_config
-
- with pathlib.Path(conda_build_config).open() as f:
- content = f.read()
-
- idx1 = content.find("# AUTOMATIC PARSING START")
- idx2 = content.find("# AUTOMATIC PARSING END")
- content = content[idx1:idx2]
-
- # filter out using conda-build specific markers
- condarc_options["variant_config_files"] = [str(conda_build_config)]
- config = make_conda_config(condarc_options)
- content = select_lines(content, ns_cfg(config), variants_in_place=False)
-
- import yaml
-
- package_pins = yaml.safe_load(content)
-
- package_names_map = package_pins.pop("package_names_map")
-
- if with_pins:
- # NB : in pins, need to strip the occasional " cuda*" suffix
- # tensorflow=x.x.x cuda* -> tensorflow=x.x.x
- packages = [
- f"{package_names_map.get(p, p)}={str(v[0]).split(' ')[0]}"
- for p, v in package_pins.items()
- ]
- else:
- packages = [package_names_map.get(p, p) for p in package_pins.keys()]
-
- return packages, package_names_map
-
-
-def filter_python_packages(resolved_packages, conda_to_python: dict[str, str | None]):
- """Filter the list of packages to return only Python packages available on
- PyPI.
-
- This function will also perform name translation and de-duplication of
- package names when possible.
-
-
- Args:
-
- resolved_packages: list of tuples ``(package, version)``, returned by the
- ``mamba create --dry-run`` subprocess, for the packages we care
- about.
-
-
- Returns
- -------
- List of of packages and versions available on PyPI
- """
-
- keep_list = []
-
- click.echo(f"Filtering {len(resolved_packages)} packages for PyPI availability")
-
- for p, v in resolved_packages:
- if p in conda_to_python["__ignore__"]:
- continue
-
- p = conda_to_python.get(p, p)
-
- try:
- url = f"https://pypi.org/pypi/{p}/{v}/json"
- r = requests.get(url)
- if r.ok:
- keep_list.append((p, v))
- else:
- click.echo(f"{p}@{v} NOT found - ignoring")
- except requests.exceptions.RequestException:
- continue
-
- return keep_list
-
-
-def update_pip_constraints_only(
- conda_config_path: pathlib.Path,
- pip_constraints_path: pathlib.Path,
- conda_to_python: dict[str, typing.Any],
-) -> None:
- """Update pip constraints only."""
-
- packages, _ = load_packages_from_conda_build_config(
- conda_config_path,
- {"channels": []},
- with_pins=True,
- )
- package_pairs = [p.split("=", 1) for p in packages]
-
- with pip_constraints_path.open("wt") as f:
- python_packages = filter_python_packages(package_pairs, conda_to_python)
- python_packages = sorted(
- [(p, v) for (p, v) in python_packages],
- key=lambda x: (x[0], len(x[0])),
- )
- click.echo(
- f"Saving {len(python_packages)} entries to `{pip_constraints_path}'..."
- )
- constraints = [f"{name}=={version}\n" for name, version in python_packages]
- f.writelines(constraints)
diff --git a/tests/test_release.py b/tests/test_release.py
deleted file mode 100644
index 1d1f493d3816dceaadb81f3435fdc2662686767f..0000000000000000000000000000000000000000
--- a/tests/test_release.py
+++ /dev/null
@@ -1,90 +0,0 @@
-# Copyright © 2023 Idiap Research Institute <contact@idiap.ch>
-#
-# SPDX-License-Identifier: BSD-3-Clause
-
-import pytest
-
-from idiap_devtools.gitlab import release
-from packaging.requirements import Requirement
-
-
-def test_pinning_no_constraints():
- """Pinning a simple packages list without pre-constraints."""
- constraints = [
- Requirement("pkg-a == 1.2.3"), # Strict constraint
- Requirement("pkg-b >= 2.5"), # Greater or equal constraint
- # pkg-c: package not in the constraints list
- Requirement("pkg-d ~= 2.0"), # Compatible constraint
- Requirement("pkg-e@ https://www.idiap.ch/dummy/pkg-e"), # URL constr.
- Requirement("pkg-f[extra1] == 1.2.3"), # With extras
- Requirement("pkg-g[extra2]@ https://www.idiap.ch/dummy/pkg-g"),
- Requirement("pkg-h == 1.2.3; sys_platform == 'darwin'"), # With marker
- Requirement(
- "pkg-i@ https://www.idiap.ch/dummy/pkg-i ; sys_platform == 'darwin'"
- ),
- Requirement("pkg-z == 1.0.0"), # Constraint not in the packages list
- ]
- pkgs = [
- "pkg-a",
- "pkg-b",
- "pkg-c",
- "pkg-d",
- "pkg-e",
- "pkg-f",
- "pkg-g",
- "pkg-h",
- "pkg-i",
- ]
-
- # Actual call. Modifies pkgs in-place.
- release._pin_versions_of_packages_list( # noqa: SLF001
- packages_list=pkgs,
- dependencies_versions=constraints,
- )
-
- expected_pkgs = [
- "pkg-a==1.2.3",
- "pkg-b>=2.5",
- "pkg-c",
- "pkg-d~=2.0",
- "pkg-e@ https://www.idiap.ch/dummy/pkg-e",
- "pkg-f[extra1]==1.2.3",
- "pkg-g[extra2]@ https://www.idiap.ch/dummy/pkg-g",
- 'pkg-h==1.2.3; sys_platform == "darwin"',
- 'pkg-i@ https://www.idiap.ch/dummy/pkg-i ; sys_platform == "darwin"',
- ]
-
- assert pkgs == expected_pkgs
-
-
-def test_pinning_multiple_times():
- """Pinning with a constraint present multiple times is not supported."""
- constraints = [
- Requirement("pkg-a == 1.2.3; sys_platform == 'darwin'"),
- Requirement("pkg-a == 3.2.1; sys_platform != 'darwin'"),
- ]
- pkgs = ["pkg-a"]
-
- with pytest.raises(NotImplementedError):
- release._pin_versions_of_packages_list(pkgs, constraints) # noqa: SLF001
-
-
-def test_pinning_with_constraints():
- """Pinning a packages list with any constraints already applied."""
- constraints = [Requirement("pkg-a == 1.2.3")]
- pkgs = ["pkg-a == 2.0"] # Constraints can not be set in the packages list.
-
- with pytest.raises(ValueError):
- release._pin_versions_of_packages_list(pkgs, constraints) # noqa: SLF001
-
- constraints = [Requirement("pkg-a == 1.2.3")]
- pkgs = ["pkg-a; sys_platform != 'darwin'"] # Neither can the markers
-
- with pytest.raises(ValueError):
- release._pin_versions_of_packages_list(pkgs, constraints) # noqa: SLF001
-
- constraints = [Requirement("pkg-a == 1.2.3")]
- pkgs = ["pkg-a(extra)"] # Nor the extras
-
- with pytest.raises(ValueError):
- release._pin_versions_of_packages_list(pkgs, constraints) # noqa: SLF001