# SPDX-FileCopyrightText: Copyright © 2023 Idiap Research Institute <contact@idiap.ch> # # SPDX-License-Identifier: GPL-3.0-or-later """Tests for TB-POC dataset.""" import importlib import pytest def id_function(val): if isinstance(val, dict): return str(val) return repr(val) @pytest.mark.parametrize( "split,lenghts", [ ("fold-0", dict(train=292, validation=74, test=41)), ("fold-1", dict(train=292, validation=74, test=41)), ("fold-2", dict(train=292, validation=74, test=41)), ("fold-3", dict(train=292, validation=74, test=41)), ("fold-4", dict(train=292, validation=74, test=41)), ("fold-5", dict(train=292, validation=74, test=41)), ("fold-6", dict(train=292, validation=74, test=41)), ("fold-7", dict(train=293, validation=74, test=40)), ("fold-8", dict(train=293, validation=74, test=40)), ("fold-9", dict(train=293, validation=74, test=40)), ], ids=id_function, # just changes how pytest prints it ) def test_protocol_consistency( database_checkers, split: str, lenghts: dict[str, int] ): from mednet.config.data.tbpoc.datamodule import make_split database_checkers.check_split( make_split(f"{split}.json"), lengths=lenghts, prefixes=( "TBPOC_CXR/TBPOC-", "TBPOC_CXR/tbpoc-", ), possible_labels=(0, 1), ) @pytest.mark.skip_if_rc_var_not_set("datadir.tbpoc") @pytest.mark.parametrize( "dataset", [ "train", "validation", "test", ], ) @pytest.mark.parametrize( "name", [ "fold_0", "fold_1", "fold_2", "fold_3", "fold_4", "fold_5", "fold_6", "fold_7", "fold_8", "fold_9", ], ) def test_loading(database_checkers, name: str, dataset: str): datamodule = importlib.import_module( f".{name}", "mednet.config.data.tbpoc" ).datamodule datamodule.model_transforms = [] # should be done before setup() datamodule.setup("predict") # sets up all datasets loader = datamodule.predict_dataloader()[dataset] limit = 3 # limit load checking for batch in loader: if limit == 0: break database_checkers.check_loaded_batch( batch, batch_size=1, color_planes=1, prefixes=( "TBPOC_CXR/TBPOC-", "TBPOC_CXR/tbpoc-", ), possible_labels=(0, 1), ) limit -= 1