diff --git a/src/mednet/libs/segmentation/config/data/avdrive/default.py b/src/mednet/libs/segmentation/config/data/avdrive/default.py index c74d2c48dfd9b737d3483c28d1ad4ce510e34004..e0e0603eced37f117c11ea5e9681b8fd2fa244af 100644 --- a/src/mednet/libs/segmentation/config/data/avdrive/default.py +++ b/src/mednet/libs/segmentation/config/data/avdrive/default.py @@ -4,7 +4,6 @@ """DRIVE dataset for Vessel Segmentation (default protocol). * Split reference: [DRIVE-2004]_ -* This configuration resolution: 544 x 544 (center-crop) * We are using DRIVE dataset for artery vein segmentation """ diff --git a/src/mednet/libs/segmentation/config/data/cxr8/default.py b/src/mednet/libs/segmentation/config/data/cxr8/default.py index ab1a0313ca58cac0c43b80fd963688e855404750..8b3467709bd85bb0bed01f30863c81d85202e62a 100644 --- a/src/mednet/libs/segmentation/config/data/cxr8/default.py +++ b/src/mednet/libs/segmentation/config/data/cxr8/default.py @@ -4,7 +4,6 @@ """CXR8 Dataset (default protocol). * Split reference: [GAAL-2020]_ -* Configuration resolution: 256 x 256 """ from mednet.libs.segmentation.config.data.cxr8.datamodule import DataModule diff --git a/src/mednet/libs/segmentation/config/data/drhagis/default.py b/src/mednet/libs/segmentation/config/data/drhagis/default.py index c0c5ad84235d6813025f9e8348fb4f734e4c78d1..61122f805d6e3d5974c9018d82ae3d83ec298b5c 100644 --- a/src/mednet/libs/segmentation/config/data/drhagis/default.py +++ b/src/mednet/libs/segmentation/config/data/drhagis/default.py @@ -1,10 +1,7 @@ # SPDX-FileCopyrightText: Copyright © 2024 Idiap Research Institute <contact@idiap.ch> # # SPDX-License-Identifier: GPL-3.0-or-later -"""DRHAGIS dataset for Vessel Segmentation (default protocol). - -* This configuration resolution: 1760 x 1760 (Resizing) -""" +"""DRHAGIS dataset for Vessel Segmentation (default protocol).""" from mednet.libs.segmentation.config.data.drhagis.datamodule import DataModule diff --git a/src/mednet/libs/segmentation/config/data/drionsdb/expert1.py b/src/mednet/libs/segmentation/config/data/drionsdb/expert1.py index 03a457e0ef5f4e6d3e406552d6088e41fe69c57a..c9339b0940d61579cebb67c88fa4d7db25ef4847 100644 --- a/src/mednet/libs/segmentation/config/data/drionsdb/expert1.py +++ b/src/mednet/libs/segmentation/config/data/drionsdb/expert1.py @@ -3,7 +3,6 @@ # SPDX-License-Identifier: GPL-3.0-or-later """DRIONS-DB for Optic Disc Segmentation (expert #1 annotations). -* Configuration resolution: 416 x 608 (after padding) * Split reference: [MANINIS-2016]_ """ diff --git a/src/mednet/libs/segmentation/config/data/drionsdb/expert2.py b/src/mednet/libs/segmentation/config/data/drionsdb/expert2.py index 07f44ae56274a7611a1da94aa467f29db9017ac1..9b6a344c1061b6dae98a0331874a3546de9305c9 100644 --- a/src/mednet/libs/segmentation/config/data/drionsdb/expert2.py +++ b/src/mednet/libs/segmentation/config/data/drionsdb/expert2.py @@ -3,7 +3,6 @@ # SPDX-License-Identifier: GPL-3.0-or-later """DRIONS-DB for Optic Disc Segmentation (expert #2 annotations). -* Configuration resolution: 416 x 608 (after padding) * Split reference: [MANINIS-2016]_ """ diff --git a/src/mednet/libs/segmentation/config/data/drishtigs1/optic_cup_all.py b/src/mednet/libs/segmentation/config/data/drishtigs1/optic_cup_all.py index b49d063bfe7c927dd1407a00a440d3003d36acde..0bacacce0c133be69b07c6c64a32aca4b7b7462f 100644 --- a/src/mednet/libs/segmentation/config/data/drishtigs1/optic_cup_all.py +++ b/src/mednet/libs/segmentation/config/data/drishtigs1/optic_cup_all.py @@ -3,7 +3,6 @@ # SPDX-License-Identifier: GPL-3.0-or-later """DRISHTI-GS1 dataset for Cup Segmentation (agreed by all annotators). -* Configuration resolution: 1760 x 2048 (after center cropping) * Reference (includes split): [DRISHTIGS1-2014]_ """ diff --git a/src/mednet/libs/segmentation/config/data/drishtigs1/optic_cup_any.py b/src/mednet/libs/segmentation/config/data/drishtigs1/optic_cup_any.py index a980f8ab4e57633616d1194c457db2908dc2c821..668c051f9742140dc75d50ed50cae65e0c13fcb7 100644 --- a/src/mednet/libs/segmentation/config/data/drishtigs1/optic_cup_any.py +++ b/src/mednet/libs/segmentation/config/data/drishtigs1/optic_cup_any.py @@ -3,7 +3,6 @@ # SPDX-License-Identifier: GPL-3.0-or-later """DRISHTI-GS1 dataset for Cup Segmentation (agreed by all annotators). -* Configuration resolution: 1760 x 2048 (after center cropping) * Reference (includes split): [DRISHTIGS1-2014]_ """ diff --git a/src/mednet/libs/segmentation/config/data/drishtigs1/optic_disc_all.py b/src/mednet/libs/segmentation/config/data/drishtigs1/optic_disc_all.py index b02c274c67130af6411d349b0996ddd7bc5b4efa..661224a65715c3963c72e719583fec7cbeeefae6 100644 --- a/src/mednet/libs/segmentation/config/data/drishtigs1/optic_disc_all.py +++ b/src/mednet/libs/segmentation/config/data/drishtigs1/optic_disc_all.py @@ -3,7 +3,6 @@ # SPDX-License-Identifier: GPL-3.0-or-later """DRISHTI-GS1 dataset for Cup Segmentation (agreed by all annotators). -* Configuration resolution: 1760 x 2048 (after center cropping) * Reference (includes split): [DRISHTIGS1-2014]_ """ diff --git a/src/mednet/libs/segmentation/config/data/drishtigs1/optic_disc_any.py b/src/mednet/libs/segmentation/config/data/drishtigs1/optic_disc_any.py index 6a5de2e21c588c349ddd44ffc1d6090d265ec5ff..1192ffc30199b4877fb7db42ee8742cbdbcb4c8b 100644 --- a/src/mednet/libs/segmentation/config/data/drishtigs1/optic_disc_any.py +++ b/src/mednet/libs/segmentation/config/data/drishtigs1/optic_disc_any.py @@ -3,7 +3,6 @@ # SPDX-License-Identifier: GPL-3.0-or-later """DRISHTI-GS1 dataset for Cup Segmentation (agreed by all annotators). -* Configuration resolution: 1760 x 2048 (after center cropping) * Reference (includes split): [DRISHTIGS1-2014]_ """ diff --git a/src/mednet/libs/segmentation/config/data/drive/default.py b/src/mednet/libs/segmentation/config/data/drive/default.py index 0e1cc0b2145034764e787f24188099f0f69a68e2..383341b7f7c8cba43c7f34d995fa9ba98584c7d2 100644 --- a/src/mednet/libs/segmentation/config/data/drive/default.py +++ b/src/mednet/libs/segmentation/config/data/drive/default.py @@ -4,8 +4,6 @@ """DRIVE dataset for Vessel Segmentation (default protocol). * Split reference: [DRIVE-2004]_ -* This configuration resolution: 544 x 544 (center-crop) -* This dataset offers a second-annotator comparison for the test set only """ from mednet.libs.segmentation.config.data.drive.datamodule import DataModule diff --git a/src/mednet/libs/segmentation/config/data/drive/drive_2nd.py b/src/mednet/libs/segmentation/config/data/drive/drive_2nd.py index aa130b4c5e4078b257ad8cd8021e4e3aee251f21..d700767cea37fdfcd67876f94cb666c223acb57f 100644 --- a/src/mednet/libs/segmentation/config/data/drive/drive_2nd.py +++ b/src/mednet/libs/segmentation/config/data/drive/drive_2nd.py @@ -4,7 +4,6 @@ """DRIVE dataset for Vessel Segmentation (default protocol). * Split reference: [DRIVE-2004]_ -* This configuration resolution: 544 x 544 (center-crop) * This dataset offers a second-annotator comparison for the test set only """ diff --git a/src/mednet/libs/segmentation/config/data/hrf/default.py b/src/mednet/libs/segmentation/config/data/hrf/default.py index 4b0c97fe9e3685ba3f94ee2696358fcdca291b33..855f6e269a67202e1dfd975de90d426c4ea1b274 100644 --- a/src/mednet/libs/segmentation/config/data/hrf/default.py +++ b/src/mednet/libs/segmentation/config/data/hrf/default.py @@ -4,7 +4,6 @@ """HRF dataset for Vessel Segmentation (default protocol). * Split reference: [ORLANDO-2017]_ -* Configuration resolution: 1168 x 1648 (about half full HRF resolution) """ from mednet.libs.segmentation.config.data.hrf.datamodule import ( diff --git a/src/mednet/libs/segmentation/config/data/iostar/optic_disc.py b/src/mednet/libs/segmentation/config/data/iostar/optic_disc.py index 2b548bd9a4345266930a5b2989e978c204923254..10f9be6082191bd4320a2c6a40411ad7682cca05 100644 --- a/src/mednet/libs/segmentation/config/data/iostar/optic_disc.py +++ b/src/mednet/libs/segmentation/config/data/iostar/optic_disc.py @@ -5,7 +5,6 @@ """IOSTAR dataset for Optic Disc Segmentation (default protocol). * Split reference: [MEYER-2017]_ -* Configuration resolution: 1024 x 1024 (original resolution) """ from mednet.libs.segmentation.config.data.iostar.datamodule import DataModule diff --git a/src/mednet/libs/segmentation/config/data/iostar/vessel.py b/src/mednet/libs/segmentation/config/data/iostar/vessel.py index 183207d67bc979cf39bcc6d1c2849ced5a3680e3..0b0c6486e78337243233303191fe2dce8e742a60 100644 --- a/src/mednet/libs/segmentation/config/data/iostar/vessel.py +++ b/src/mednet/libs/segmentation/config/data/iostar/vessel.py @@ -5,7 +5,6 @@ """IOSTAR dataset for Vessel Segmentation (default protocol). * Split reference: [MEYER-2017]_ -* Configuration resolution: 1024 x 1024 (original resolution) """ from mednet.libs.segmentation.config.data.iostar.datamodule import DataModule diff --git a/src/mednet/libs/segmentation/config/data/jsrt/default.py b/src/mednet/libs/segmentation/config/data/jsrt/default.py index 51c012fd49e3aa298c72c526fb78a637a3bd6a51..5b755e286d1cd19ad3ae724107c8df6264da76bc 100644 --- a/src/mednet/libs/segmentation/config/data/jsrt/default.py +++ b/src/mednet/libs/segmentation/config/data/jsrt/default.py @@ -5,7 +5,6 @@ (default protocol). * Split reference: [GAAL-2020]_ -* Configuration resolution: 256 x 256 """ from mednet.libs.segmentation.config.data.jsrt.datamodule import ( diff --git a/src/mednet/libs/segmentation/config/data/montgomery/default.py b/src/mednet/libs/segmentation/config/data/montgomery/default.py index 33e21d7937c8a2c7983ac177ec204d3214c4462b..40b1632a234f0e57d6ba3bf4ef6726e2c7275fd5 100644 --- a/src/mednet/libs/segmentation/config/data/montgomery/default.py +++ b/src/mednet/libs/segmentation/config/data/montgomery/default.py @@ -5,7 +5,6 @@ """Montgomery County dataset for Lung Segmentation (default protocol). * Split reference: [GAAL-2020]_ -* Configuration resolution: 256 x 256 """ from mednet.libs.segmentation.config.data.montgomery.datamodule import ( diff --git a/src/mednet/libs/segmentation/config/data/refuge/cup.py b/src/mednet/libs/segmentation/config/data/refuge/cup.py index a4514b584ad902b98018222d2480233564264d06..bf4a5264ba4bc9d5a9c54b961d636b10a2bceda8 100644 --- a/src/mednet/libs/segmentation/config/data/refuge/cup.py +++ b/src/mednet/libs/segmentation/config/data/refuge/cup.py @@ -3,7 +3,6 @@ # SPDX-License-Identifier: GPL-3.0-or-later """REFUGE dataset for Optic Cup Segmentation (default protocol). -* Configuration resolution: 1632 x 1632 (after resizing and padding) * Reference (including split): [REFUGE-2018]_ """ diff --git a/src/mednet/libs/segmentation/config/data/refuge/disc.py b/src/mednet/libs/segmentation/config/data/refuge/disc.py index c06ea99c79814d95dd94b9e2ce6cc80eb617653e..3c876e7ee7f3441593deb07eb4528113663f9a57 100644 --- a/src/mednet/libs/segmentation/config/data/refuge/disc.py +++ b/src/mednet/libs/segmentation/config/data/refuge/disc.py @@ -3,7 +3,6 @@ # SPDX-License-Identifier: GPL-3.0-or-later """REFUGE dataset for Optic Disc Segmentation (default protocol). -* Configuration resolution: 1632 x 1632 (after resizing and padding) * Reference (including split): [REFUGE-2018]_ """ diff --git a/src/mednet/libs/segmentation/config/data/rimoner3/cup_exp1.py b/src/mednet/libs/segmentation/config/data/rimoner3/cup_exp1.py index 79208027ad7a2e053c7cbaece5e03899664e4f2e..19ed62d0f44c74a700c71d8b3128f7d5cf3ce6a3 100644 --- a/src/mednet/libs/segmentation/config/data/rimoner3/cup_exp1.py +++ b/src/mednet/libs/segmentation/config/data/rimoner3/cup_exp1.py @@ -3,7 +3,6 @@ # SPDX-License-Identifier: GPL-3.0-or-later """RIM-ONE r3 for Optic Cup Segmentation (expert #1 annotations). -* Configuration resolution: 1440 x 1088 (after padding) * Split reference: [MANINIS-2016]_ """ diff --git a/src/mednet/libs/segmentation/config/data/rimoner3/cup_exp2.py b/src/mednet/libs/segmentation/config/data/rimoner3/cup_exp2.py index 79208027ad7a2e053c7cbaece5e03899664e4f2e..19ed62d0f44c74a700c71d8b3128f7d5cf3ce6a3 100644 --- a/src/mednet/libs/segmentation/config/data/rimoner3/cup_exp2.py +++ b/src/mednet/libs/segmentation/config/data/rimoner3/cup_exp2.py @@ -3,7 +3,6 @@ # SPDX-License-Identifier: GPL-3.0-or-later """RIM-ONE r3 for Optic Cup Segmentation (expert #1 annotations). -* Configuration resolution: 1440 x 1088 (after padding) * Split reference: [MANINIS-2016]_ """ diff --git a/src/mednet/libs/segmentation/config/data/rimoner3/disc_exp1.py b/src/mednet/libs/segmentation/config/data/rimoner3/disc_exp1.py index 203f862012ba1d8f24835ab8667383a63632ed78..19c1cb092123669223862b868218be337ae05411 100644 --- a/src/mednet/libs/segmentation/config/data/rimoner3/disc_exp1.py +++ b/src/mednet/libs/segmentation/config/data/rimoner3/disc_exp1.py @@ -3,7 +3,6 @@ # SPDX-License-Identifier: GPL-3.0-or-later """RIM-ONE r3 for Optic Disc Segmentation (expert #1 annotations). -* Configuration resolution: 1440 x 1088 (after padding) * Split reference: [MANINIS-2016]_ """ diff --git a/src/mednet/libs/segmentation/config/data/rimoner3/disc_exp2.py b/src/mednet/libs/segmentation/config/data/rimoner3/disc_exp2.py index db0c41b331179a6ab430222197834e2e597ae955..bb17c2467dc64cf0501f2e11d2ff2daed853c15d 100644 --- a/src/mednet/libs/segmentation/config/data/rimoner3/disc_exp2.py +++ b/src/mednet/libs/segmentation/config/data/rimoner3/disc_exp2.py @@ -3,7 +3,6 @@ # SPDX-License-Identifier: GPL-3.0-or-later """RIM-ONE r3 for Optic Disc Segmentation (expert #2 annotations). -* Configuration resolution: 1440 x 1088 (after padding) * Split reference: [MANINIS-2016]_ """ diff --git a/src/mednet/libs/segmentation/config/data/shenzhen/default.py b/src/mednet/libs/segmentation/config/data/shenzhen/default.py index 4ef32734c5d8a046b1662791410b490bf6995267..c66e34add06260eaae69d48bbae11b640620fff5 100644 --- a/src/mednet/libs/segmentation/config/data/shenzhen/default.py +++ b/src/mednet/libs/segmentation/config/data/shenzhen/default.py @@ -4,7 +4,6 @@ """Shenzhen dataset for Lung Segmentation (default protocol). * Split reference: [GAAL-2020]_ -* Configuration resolution: 256 x 256 """ from mednet.libs.segmentation.config.data.shenzhen.datamodule import DataModule diff --git a/src/mednet/libs/segmentation/config/data/stare/ah.py b/src/mednet/libs/segmentation/config/data/stare/ah.py index 811d0a0fee29729f5f8e68a8261695ecfe5fea2d..1bde293dd28c2747a2f0df619c18b034276f411d 100644 --- a/src/mednet/libs/segmentation/config/data/stare/ah.py +++ b/src/mednet/libs/segmentation/config/data/stare/ah.py @@ -4,7 +4,6 @@ """STARE dataset for Vessel Segmentation (annotator AH). -* Configuration resolution: 704 x 608 (after padding) * Split reference: [MANINIS-2016]_ * This dataset offers a second-annotator comparison (using protocol "vk") """ diff --git a/src/mednet/libs/segmentation/config/data/stare/vk.py b/src/mednet/libs/segmentation/config/data/stare/vk.py index 5a8711863f93cb6bfa9f663d4a180a9e62a1a400..2084c8eb324a63d91de995505c4fd844dad1bfd7 100644 --- a/src/mednet/libs/segmentation/config/data/stare/vk.py +++ b/src/mednet/libs/segmentation/config/data/stare/vk.py @@ -4,7 +4,6 @@ """STARE dataset for Vessel Segmentation (annotator VK). -* Configuration resolution: 704 x 608 (after padding) * Split reference: [MANINIS-2016]_ * This dataset offers a second-annotator comparison (using protocol "ah") """