diff --git a/src/ptbench/configs/datasets/tbx11k_simplified/fold_0.py b/src/ptbench/configs/datasets/tbx11k_simplified/fold_0.py
new file mode 100644
index 0000000000000000000000000000000000000000..10c7f549de385770c6585612ebd2b2bafb9310ee
--- /dev/null
+++ b/src/ptbench/configs/datasets/tbx11k_simplified/fold_0.py
@@ -0,0 +1,17 @@
+# Copyright © 2022 Idiap Research Institute <contact@idiap.ch>
+#
+# SPDX-License-Identifier: GPL-3.0-or-later
+
+"""TBX11k simplified dataset for TB detection (default protocol)
+
+* Split reference: first 62.5% of TB and healthy CXR for "train" 15.9% for
+* "validation", 21.6% for "test"
+* This split only consists of healthy and active TB samples
+* "Latent TB" or "sick & non-TB" samples are not included in this configuration
+* This configuration resolution: 512 x 512 (default)
+* See :py:mod:`ptbench.data.tbx11k` for dataset details
+"""
+
+from . import _maker
+
+dataset = _maker("fold_0")
diff --git a/src/ptbench/configs/datasets/tbx11k_simplified/fold_0_rgb.py b/src/ptbench/configs/datasets/tbx11k_simplified/fold_0_rgb.py
new file mode 100644
index 0000000000000000000000000000000000000000..6fe4cb2db658b4823cab36eb795d2a9563218fb3
--- /dev/null
+++ b/src/ptbench/configs/datasets/tbx11k_simplified/fold_0_rgb.py
@@ -0,0 +1,17 @@
+# Copyright © 2022 Idiap Research Institute <contact@idiap.ch>
+#
+# SPDX-License-Identifier: GPL-3.0-or-later
+
+"""TBX11k simplified dataset for TB detection (default protocol)
+
+* Split reference: first 62.5% of TB and healthy CXR for "train" 15.9% for
+* "validation", 21.6% for "test"
+* This split only consists of healthy and active TB samples
+* "Latent TB" or "sick & non-TB" samples are not included in this configuration
+* This configuration resolution: 512 x 512 (default)
+* See :py:mod:`ptbench.data.tbx11k` for dataset details
+"""
+
+from . import _maker
+
+dataset = _maker("fold_0", RGB=True)
diff --git a/src/ptbench/configs/datasets/tbx11k_simplified/fold_1.py b/src/ptbench/configs/datasets/tbx11k_simplified/fold_1.py
new file mode 100644
index 0000000000000000000000000000000000000000..ec8d22e871a1678553d37392a6cd4193d084130d
--- /dev/null
+++ b/src/ptbench/configs/datasets/tbx11k_simplified/fold_1.py
@@ -0,0 +1,17 @@
+# Copyright © 2022 Idiap Research Institute <contact@idiap.ch>
+#
+# SPDX-License-Identifier: GPL-3.0-or-later
+
+"""TBX11k simplified dataset for TB detection (default protocol)
+
+* Split reference: first 62.5% of TB and healthy CXR for "train" 15.9% for
+* "validation", 21.6% for "test"
+* This split only consists of healthy and active TB samples
+* "Latent TB" or "sick & non-TB" samples are not included in this configuration
+* This configuration resolution: 512 x 512 (default)
+* See :py:mod:`ptbench.data.tbx11k` for dataset details
+"""
+
+from . import _maker
+
+dataset = _maker("fold_1")
diff --git a/src/ptbench/configs/datasets/tbx11k_simplified/fold_1_rgb.py b/src/ptbench/configs/datasets/tbx11k_simplified/fold_1_rgb.py
new file mode 100644
index 0000000000000000000000000000000000000000..33ded940784985f195c4ebd95cbbeb0e8d8980e8
--- /dev/null
+++ b/src/ptbench/configs/datasets/tbx11k_simplified/fold_1_rgb.py
@@ -0,0 +1,17 @@
+# Copyright © 2022 Idiap Research Institute <contact@idiap.ch>
+#
+# SPDX-License-Identifier: GPL-3.0-or-later
+
+"""TBX11k simplified dataset for TB detection (default protocol)
+
+* Split reference: first 62.5% of TB and healthy CXR for "train" 15.9% for
+* "validation", 21.6% for "test"
+* This split only consists of healthy and active TB samples
+* "Latent TB" or "sick & non-TB" samples are not included in this configuration
+* This configuration resolution: 512 x 512 (default)
+* See :py:mod:`ptbench.data.tbx11k` for dataset details
+"""
+
+from . import _maker
+
+dataset = _maker("fold_1", RGB=True)
diff --git a/src/ptbench/configs/datasets/tbx11k_simplified/fold_2.py b/src/ptbench/configs/datasets/tbx11k_simplified/fold_2.py
new file mode 100644
index 0000000000000000000000000000000000000000..77493339ddc90f708f0dbc7de00dbb88f3bd9ccf
--- /dev/null
+++ b/src/ptbench/configs/datasets/tbx11k_simplified/fold_2.py
@@ -0,0 +1,17 @@
+# Copyright © 2022 Idiap Research Institute <contact@idiap.ch>
+#
+# SPDX-License-Identifier: GPL-3.0-or-later
+
+"""TBX11k simplified dataset for TB detection (default protocol)
+
+* Split reference: first 62.5% of TB and healthy CXR for "train" 15.9% for
+* "validation", 21.6% for "test"
+* This split only consists of healthy and active TB samples
+* "Latent TB" or "sick & non-TB" samples are not included in this configuration
+* This configuration resolution: 512 x 512 (default)
+* See :py:mod:`ptbench.data.tbx11k` for dataset details
+"""
+
+from . import _maker
+
+dataset = _maker("fold_2")
diff --git a/src/ptbench/configs/datasets/tbx11k_simplified/fold_2_rgb.py b/src/ptbench/configs/datasets/tbx11k_simplified/fold_2_rgb.py
new file mode 100644
index 0000000000000000000000000000000000000000..fd7e7b6549c8bda7b9902fb6ce7fb471d9a4cfb8
--- /dev/null
+++ b/src/ptbench/configs/datasets/tbx11k_simplified/fold_2_rgb.py
@@ -0,0 +1,17 @@
+# Copyright © 2022 Idiap Research Institute <contact@idiap.ch>
+#
+# SPDX-License-Identifier: GPL-3.0-or-later
+
+"""TBX11k simplified dataset for TB detection (default protocol)
+
+* Split reference: first 62.5% of TB and healthy CXR for "train" 15.9% for
+* "validation", 21.6% for "test"
+* This split only consists of healthy and active TB samples
+* "Latent TB" or "sick & non-TB" samples are not included in this configuration
+* This configuration resolution: 512 x 512 (default)
+* See :py:mod:`ptbench.data.tbx11k` for dataset details
+"""
+
+from . import _maker
+
+dataset = _maker("fold_2", RGB=True)
diff --git a/src/ptbench/configs/datasets/tbx11k_simplified/fold_3.py b/src/ptbench/configs/datasets/tbx11k_simplified/fold_3.py
new file mode 100644
index 0000000000000000000000000000000000000000..4906ed7bf1310f3333bd64899c5645554238e3d9
--- /dev/null
+++ b/src/ptbench/configs/datasets/tbx11k_simplified/fold_3.py
@@ -0,0 +1,17 @@
+# Copyright © 2022 Idiap Research Institute <contact@idiap.ch>
+#
+# SPDX-License-Identifier: GPL-3.0-or-later
+
+"""TBX11k simplified dataset for TB detection (default protocol)
+
+* Split reference: first 62.5% of TB and healthy CXR for "train" 15.9% for
+* "validation", 21.6% for "test"
+* This split only consists of healthy and active TB samples
+* "Latent TB" or "sick & non-TB" samples are not included in this configuration
+* This configuration resolution: 512 x 512 (default)
+* See :py:mod:`ptbench.data.tbx11k` for dataset details
+"""
+
+from . import _maker
+
+dataset = _maker("fold_3")
diff --git a/src/ptbench/configs/datasets/tbx11k_simplified/fold_3_rgb.py b/src/ptbench/configs/datasets/tbx11k_simplified/fold_3_rgb.py
new file mode 100644
index 0000000000000000000000000000000000000000..0b764e095e764fba27efbac92f61ba8b3b7bfced
--- /dev/null
+++ b/src/ptbench/configs/datasets/tbx11k_simplified/fold_3_rgb.py
@@ -0,0 +1,17 @@
+# Copyright © 2022 Idiap Research Institute <contact@idiap.ch>
+#
+# SPDX-License-Identifier: GPL-3.0-or-later
+
+"""TBX11k simplified dataset for TB detection (default protocol)
+
+* Split reference: first 62.5% of TB and healthy CXR for "train" 15.9% for
+* "validation", 21.6% for "test"
+* This split only consists of healthy and active TB samples
+* "Latent TB" or "sick & non-TB" samples are not included in this configuration
+* This configuration resolution: 512 x 512 (default)
+* See :py:mod:`ptbench.data.tbx11k` for dataset details
+"""
+
+from . import _maker
+
+dataset = _maker("fold_3", RGB=True)
diff --git a/src/ptbench/configs/datasets/tbx11k_simplified/fold_4.py b/src/ptbench/configs/datasets/tbx11k_simplified/fold_4.py
new file mode 100644
index 0000000000000000000000000000000000000000..5179e359319e9face3b4e8b32eb8d5a86eb619b0
--- /dev/null
+++ b/src/ptbench/configs/datasets/tbx11k_simplified/fold_4.py
@@ -0,0 +1,17 @@
+# Copyright © 2022 Idiap Research Institute <contact@idiap.ch>
+#
+# SPDX-License-Identifier: GPL-3.0-or-later
+
+"""TBX11k simplified dataset for TB detection (default protocol)
+
+* Split reference: first 62.5% of TB and healthy CXR for "train" 15.9% for
+* "validation", 21.6% for "test"
+* This split only consists of healthy and active TB samples
+* "Latent TB" or "sick & non-TB" samples are not included in this configuration
+* This configuration resolution: 512 x 512 (default)
+* See :py:mod:`ptbench.data.tbx11k` for dataset details
+"""
+
+from . import _maker
+
+dataset = _maker("fold_4")
diff --git a/src/ptbench/configs/datasets/tbx11k_simplified/fold_4_rgb.py b/src/ptbench/configs/datasets/tbx11k_simplified/fold_4_rgb.py
new file mode 100644
index 0000000000000000000000000000000000000000..4f57495482f3a8ae82f3aae4b7657e94689609af
--- /dev/null
+++ b/src/ptbench/configs/datasets/tbx11k_simplified/fold_4_rgb.py
@@ -0,0 +1,17 @@
+# Copyright © 2022 Idiap Research Institute <contact@idiap.ch>
+#
+# SPDX-License-Identifier: GPL-3.0-or-later
+
+"""TBX11k simplified dataset for TB detection (default protocol)
+
+* Split reference: first 62.5% of TB and healthy CXR for "train" 15.9% for
+* "validation", 21.6% for "test"
+* This split only consists of healthy and active TB samples
+* "Latent TB" or "sick & non-TB" samples are not included in this configuration
+* This configuration resolution: 512 x 512 (default)
+* See :py:mod:`ptbench.data.tbx11k` for dataset details
+"""
+
+from . import _maker
+
+dataset = _maker("fold_4", RGB=True)
diff --git a/src/ptbench/configs/datasets/tbx11k_simplified/fold_5.py b/src/ptbench/configs/datasets/tbx11k_simplified/fold_5.py
new file mode 100644
index 0000000000000000000000000000000000000000..4ec01f68557b0cd016f9f6f5780c1fbb8db86a7b
--- /dev/null
+++ b/src/ptbench/configs/datasets/tbx11k_simplified/fold_5.py
@@ -0,0 +1,17 @@
+# Copyright © 2022 Idiap Research Institute <contact@idiap.ch>
+#
+# SPDX-License-Identifier: GPL-3.0-or-later
+
+"""TBX11k simplified dataset for TB detection (default protocol)
+
+* Split reference: first 62.5% of TB and healthy CXR for "train" 15.9% for
+* "validation", 21.6% for "test"
+* This split only consists of healthy and active TB samples
+* "Latent TB" or "sick & non-TB" samples are not included in this configuration
+* This configuration resolution: 512 x 512 (default)
+* See :py:mod:`ptbench.data.tbx11k` for dataset details
+"""
+
+from . import _maker
+
+dataset = _maker("fold_5")
diff --git a/src/ptbench/configs/datasets/tbx11k_simplified/fold_5_rgb.py b/src/ptbench/configs/datasets/tbx11k_simplified/fold_5_rgb.py
new file mode 100644
index 0000000000000000000000000000000000000000..46bc55302aebd6e519a4c4e63c3f01ab9f9c699b
--- /dev/null
+++ b/src/ptbench/configs/datasets/tbx11k_simplified/fold_5_rgb.py
@@ -0,0 +1,17 @@
+# Copyright © 2022 Idiap Research Institute <contact@idiap.ch>
+#
+# SPDX-License-Identifier: GPL-3.0-or-later
+
+"""TBX11k simplified dataset for TB detection (default protocol)
+
+* Split reference: first 62.5% of TB and healthy CXR for "train" 15.9% for
+* "validation", 21.6% for "test"
+* This split only consists of healthy and active TB samples
+* "Latent TB" or "sick & non-TB" samples are not included in this configuration
+* This configuration resolution: 512 x 512 (default)
+* See :py:mod:`ptbench.data.tbx11k` for dataset details
+"""
+
+from . import _maker
+
+dataset = _maker("fold_5", RGB=True)
diff --git a/src/ptbench/configs/datasets/tbx11k_simplified/fold_6.py b/src/ptbench/configs/datasets/tbx11k_simplified/fold_6.py
new file mode 100644
index 0000000000000000000000000000000000000000..f88776c9d0fb877e48cb555984bd2724a68af3ac
--- /dev/null
+++ b/src/ptbench/configs/datasets/tbx11k_simplified/fold_6.py
@@ -0,0 +1,17 @@
+# Copyright © 2022 Idiap Research Institute <contact@idiap.ch>
+#
+# SPDX-License-Identifier: GPL-3.0-or-later
+
+"""TBX11k simplified dataset for TB detection (default protocol)
+
+* Split reference: first 62.5% of TB and healthy CXR for "train" 15.9% for
+* "validation", 21.6% for "test"
+* This split only consists of healthy and active TB samples
+* "Latent TB" or "sick & non-TB" samples are not included in this configuration
+* This configuration resolution: 512 x 512 (default)
+* See :py:mod:`ptbench.data.tbx11k` for dataset details
+"""
+
+from . import _maker
+
+dataset = _maker("fold_6")
diff --git a/src/ptbench/configs/datasets/tbx11k_simplified/fold_6_rgb.py b/src/ptbench/configs/datasets/tbx11k_simplified/fold_6_rgb.py
new file mode 100644
index 0000000000000000000000000000000000000000..26adeb38171bbd15fe6f7b29c3618885600397bc
--- /dev/null
+++ b/src/ptbench/configs/datasets/tbx11k_simplified/fold_6_rgb.py
@@ -0,0 +1,17 @@
+# Copyright © 2022 Idiap Research Institute <contact@idiap.ch>
+#
+# SPDX-License-Identifier: GPL-3.0-or-later
+
+"""TBX11k simplified dataset for TB detection (default protocol)
+
+* Split reference: first 62.5% of TB and healthy CXR for "train" 15.9% for
+* "validation", 21.6% for "test"
+* This split only consists of healthy and active TB samples
+* "Latent TB" or "sick & non-TB" samples are not included in this configuration
+* This configuration resolution: 512 x 512 (default)
+* See :py:mod:`ptbench.data.tbx11k` for dataset details
+"""
+
+from . import _maker
+
+dataset = _maker("fold_6", RGB=True)
diff --git a/src/ptbench/configs/datasets/tbx11k_simplified/fold_7.py b/src/ptbench/configs/datasets/tbx11k_simplified/fold_7.py
new file mode 100644
index 0000000000000000000000000000000000000000..756dc9c877ec3f14950b5406c7ecaa7036b8d9c0
--- /dev/null
+++ b/src/ptbench/configs/datasets/tbx11k_simplified/fold_7.py
@@ -0,0 +1,17 @@
+# Copyright © 2022 Idiap Research Institute <contact@idiap.ch>
+#
+# SPDX-License-Identifier: GPL-3.0-or-later
+
+"""TBX11k simplified dataset for TB detection (default protocol)
+
+* Split reference: first 62.5% of TB and healthy CXR for "train" 15.9% for
+* "validation", 21.6% for "test"
+* This split only consists of healthy and active TB samples
+* "Latent TB" or "sick & non-TB" samples are not included in this configuration
+* This configuration resolution: 512 x 512 (default)
+* See :py:mod:`ptbench.data.tbx11k` for dataset details
+"""
+
+from . import _maker
+
+dataset = _maker("fold_7")
diff --git a/src/ptbench/configs/datasets/tbx11k_simplified/fold_7_rgb.py b/src/ptbench/configs/datasets/tbx11k_simplified/fold_7_rgb.py
new file mode 100644
index 0000000000000000000000000000000000000000..17c2f7494f0ff4532db3791413fe7d9b1096a7ca
--- /dev/null
+++ b/src/ptbench/configs/datasets/tbx11k_simplified/fold_7_rgb.py
@@ -0,0 +1,17 @@
+# Copyright © 2022 Idiap Research Institute <contact@idiap.ch>
+#
+# SPDX-License-Identifier: GPL-3.0-or-later
+
+"""TBX11k simplified dataset for TB detection (default protocol)
+
+* Split reference: first 62.5% of TB and healthy CXR for "train" 15.9% for
+* "validation", 21.6% for "test"
+* This split only consists of healthy and active TB samples
+* "Latent TB" or "sick & non-TB" samples are not included in this configuration
+* This configuration resolution: 512 x 512 (default)
+* See :py:mod:`ptbench.data.tbx11k` for dataset details
+"""
+
+from . import _maker
+
+dataset = _maker("fold_7", RGB=True)
diff --git a/src/ptbench/configs/datasets/tbx11k_simplified/fold_8.py b/src/ptbench/configs/datasets/tbx11k_simplified/fold_8.py
new file mode 100644
index 0000000000000000000000000000000000000000..1b267cd5dfe004bf11217a0ac61489b9de8f720d
--- /dev/null
+++ b/src/ptbench/configs/datasets/tbx11k_simplified/fold_8.py
@@ -0,0 +1,17 @@
+# Copyright © 2022 Idiap Research Institute <contact@idiap.ch>
+#
+# SPDX-License-Identifier: GPL-3.0-or-later
+
+"""TBX11k simplified dataset for TB detection (default protocol)
+
+* Split reference: first 62.5% of TB and healthy CXR for "train" 15.9% for
+* "validation", 21.6% for "test"
+* This split only consists of healthy and active TB samples
+* "Latent TB" or "sick & non-TB" samples are not included in this configuration
+* This configuration resolution: 512 x 512 (default)
+* See :py:mod:`ptbench.data.tbx11k` for dataset details
+"""
+
+from . import _maker
+
+dataset = _maker("fold_8")
diff --git a/src/ptbench/configs/datasets/tbx11k_simplified/fold_8_rgb.py b/src/ptbench/configs/datasets/tbx11k_simplified/fold_8_rgb.py
new file mode 100644
index 0000000000000000000000000000000000000000..dea5aa546a8c89c1bc3c1f87e5737c255ff487b8
--- /dev/null
+++ b/src/ptbench/configs/datasets/tbx11k_simplified/fold_8_rgb.py
@@ -0,0 +1,17 @@
+# Copyright © 2022 Idiap Research Institute <contact@idiap.ch>
+#
+# SPDX-License-Identifier: GPL-3.0-or-later
+
+"""TBX11k simplified dataset for TB detection (default protocol)
+
+* Split reference: first 62.5% of TB and healthy CXR for "train" 15.9% for
+* "validation", 21.6% for "test"
+* This split only consists of healthy and active TB samples
+* "Latent TB" or "sick & non-TB" samples are not included in this configuration
+* This configuration resolution: 512 x 512 (default)
+* See :py:mod:`ptbench.data.tbx11k` for dataset details
+"""
+
+from . import _maker
+
+dataset = _maker("fold_8", RGB=True)
diff --git a/src/ptbench/configs/datasets/tbx11k_simplified/fold_9.py b/src/ptbench/configs/datasets/tbx11k_simplified/fold_9.py
new file mode 100644
index 0000000000000000000000000000000000000000..74696cf6f8fc31d0bfcbc3c4e63bcf51571cdb2f
--- /dev/null
+++ b/src/ptbench/configs/datasets/tbx11k_simplified/fold_9.py
@@ -0,0 +1,17 @@
+# Copyright © 2022 Idiap Research Institute <contact@idiap.ch>
+#
+# SPDX-License-Identifier: GPL-3.0-or-later
+
+"""TBX11k simplified dataset for TB detection (default protocol)
+
+* Split reference: first 62.5% of TB and healthy CXR for "train" 15.9% for
+* "validation", 21.6% for "test"
+* This split only consists of healthy and active TB samples
+* "Latent TB" or "sick & non-TB" samples are not included in this configuration
+* This configuration resolution: 512 x 512 (default)
+* See :py:mod:`ptbench.data.tbx11k` for dataset details
+"""
+
+from . import _maker
+
+dataset = _maker("fold_9")
diff --git a/src/ptbench/configs/datasets/tbx11k_simplified/fold_9_rgb.py b/src/ptbench/configs/datasets/tbx11k_simplified/fold_9_rgb.py
new file mode 100644
index 0000000000000000000000000000000000000000..a00ab68d9b3f44584b8efe9248a9947796c4694b
--- /dev/null
+++ b/src/ptbench/configs/datasets/tbx11k_simplified/fold_9_rgb.py
@@ -0,0 +1,17 @@
+# Copyright © 2022 Idiap Research Institute <contact@idiap.ch>
+#
+# SPDX-License-Identifier: GPL-3.0-or-later
+
+"""TBX11k simplified dataset for TB detection (default protocol)
+
+* Split reference: first 62.5% of TB and healthy CXR for "train" 15.9% for
+* "validation", 21.6% for "test"
+* This split only consists of healthy and active TB samples
+* "Latent TB" or "sick & non-TB" samples are not included in this configuration
+* This configuration resolution: 512 x 512 (default)
+* See :py:mod:`ptbench.data.tbx11k` for dataset details
+"""
+
+from . import _maker
+
+dataset = _maker("fold_9", RGB=True)
diff --git a/src/ptbench/configs/datasets/tbx11k_simplified_RS/fold_0.py b/src/ptbench/configs/datasets/tbx11k_simplified_RS/fold_0.py
new file mode 100644
index 0000000000000000000000000000000000000000..10c7f549de385770c6585612ebd2b2bafb9310ee
--- /dev/null
+++ b/src/ptbench/configs/datasets/tbx11k_simplified_RS/fold_0.py
@@ -0,0 +1,17 @@
+# Copyright © 2022 Idiap Research Institute <contact@idiap.ch>
+#
+# SPDX-License-Identifier: GPL-3.0-or-later
+
+"""TBX11k simplified dataset for TB detection (default protocol)
+
+* Split reference: first 62.5% of TB and healthy CXR for "train" 15.9% for
+* "validation", 21.6% for "test"
+* This split only consists of healthy and active TB samples
+* "Latent TB" or "sick & non-TB" samples are not included in this configuration
+* This configuration resolution: 512 x 512 (default)
+* See :py:mod:`ptbench.data.tbx11k` for dataset details
+"""
+
+from . import _maker
+
+dataset = _maker("fold_0")
diff --git a/src/ptbench/configs/datasets/tbx11k_simplified_RS/fold_1.py b/src/ptbench/configs/datasets/tbx11k_simplified_RS/fold_1.py
new file mode 100644
index 0000000000000000000000000000000000000000..ec8d22e871a1678553d37392a6cd4193d084130d
--- /dev/null
+++ b/src/ptbench/configs/datasets/tbx11k_simplified_RS/fold_1.py
@@ -0,0 +1,17 @@
+# Copyright © 2022 Idiap Research Institute <contact@idiap.ch>
+#
+# SPDX-License-Identifier: GPL-3.0-or-later
+
+"""TBX11k simplified dataset for TB detection (default protocol)
+
+* Split reference: first 62.5% of TB and healthy CXR for "train" 15.9% for
+* "validation", 21.6% for "test"
+* This split only consists of healthy and active TB samples
+* "Latent TB" or "sick & non-TB" samples are not included in this configuration
+* This configuration resolution: 512 x 512 (default)
+* See :py:mod:`ptbench.data.tbx11k` for dataset details
+"""
+
+from . import _maker
+
+dataset = _maker("fold_1")
diff --git a/src/ptbench/configs/datasets/tbx11k_simplified_RS/fold_2.py b/src/ptbench/configs/datasets/tbx11k_simplified_RS/fold_2.py
new file mode 100644
index 0000000000000000000000000000000000000000..77493339ddc90f708f0dbc7de00dbb88f3bd9ccf
--- /dev/null
+++ b/src/ptbench/configs/datasets/tbx11k_simplified_RS/fold_2.py
@@ -0,0 +1,17 @@
+# Copyright © 2022 Idiap Research Institute <contact@idiap.ch>
+#
+# SPDX-License-Identifier: GPL-3.0-or-later
+
+"""TBX11k simplified dataset for TB detection (default protocol)
+
+* Split reference: first 62.5% of TB and healthy CXR for "train" 15.9% for
+* "validation", 21.6% for "test"
+* This split only consists of healthy and active TB samples
+* "Latent TB" or "sick & non-TB" samples are not included in this configuration
+* This configuration resolution: 512 x 512 (default)
+* See :py:mod:`ptbench.data.tbx11k` for dataset details
+"""
+
+from . import _maker
+
+dataset = _maker("fold_2")
diff --git a/src/ptbench/configs/datasets/tbx11k_simplified_RS/fold_3.py b/src/ptbench/configs/datasets/tbx11k_simplified_RS/fold_3.py
new file mode 100644
index 0000000000000000000000000000000000000000..4906ed7bf1310f3333bd64899c5645554238e3d9
--- /dev/null
+++ b/src/ptbench/configs/datasets/tbx11k_simplified_RS/fold_3.py
@@ -0,0 +1,17 @@
+# Copyright © 2022 Idiap Research Institute <contact@idiap.ch>
+#
+# SPDX-License-Identifier: GPL-3.0-or-later
+
+"""TBX11k simplified dataset for TB detection (default protocol)
+
+* Split reference: first 62.5% of TB and healthy CXR for "train" 15.9% for
+* "validation", 21.6% for "test"
+* This split only consists of healthy and active TB samples
+* "Latent TB" or "sick & non-TB" samples are not included in this configuration
+* This configuration resolution: 512 x 512 (default)
+* See :py:mod:`ptbench.data.tbx11k` for dataset details
+"""
+
+from . import _maker
+
+dataset = _maker("fold_3")
diff --git a/src/ptbench/configs/datasets/tbx11k_simplified_RS/fold_4.py b/src/ptbench/configs/datasets/tbx11k_simplified_RS/fold_4.py
new file mode 100644
index 0000000000000000000000000000000000000000..5179e359319e9face3b4e8b32eb8d5a86eb619b0
--- /dev/null
+++ b/src/ptbench/configs/datasets/tbx11k_simplified_RS/fold_4.py
@@ -0,0 +1,17 @@
+# Copyright © 2022 Idiap Research Institute <contact@idiap.ch>
+#
+# SPDX-License-Identifier: GPL-3.0-or-later
+
+"""TBX11k simplified dataset for TB detection (default protocol)
+
+* Split reference: first 62.5% of TB and healthy CXR for "train" 15.9% for
+* "validation", 21.6% for "test"
+* This split only consists of healthy and active TB samples
+* "Latent TB" or "sick & non-TB" samples are not included in this configuration
+* This configuration resolution: 512 x 512 (default)
+* See :py:mod:`ptbench.data.tbx11k` for dataset details
+"""
+
+from . import _maker
+
+dataset = _maker("fold_4")
diff --git a/src/ptbench/configs/datasets/tbx11k_simplified_RS/fold_5.py b/src/ptbench/configs/datasets/tbx11k_simplified_RS/fold_5.py
new file mode 100644
index 0000000000000000000000000000000000000000..4ec01f68557b0cd016f9f6f5780c1fbb8db86a7b
--- /dev/null
+++ b/src/ptbench/configs/datasets/tbx11k_simplified_RS/fold_5.py
@@ -0,0 +1,17 @@
+# Copyright © 2022 Idiap Research Institute <contact@idiap.ch>
+#
+# SPDX-License-Identifier: GPL-3.0-or-later
+
+"""TBX11k simplified dataset for TB detection (default protocol)
+
+* Split reference: first 62.5% of TB and healthy CXR for "train" 15.9% for
+* "validation", 21.6% for "test"
+* This split only consists of healthy and active TB samples
+* "Latent TB" or "sick & non-TB" samples are not included in this configuration
+* This configuration resolution: 512 x 512 (default)
+* See :py:mod:`ptbench.data.tbx11k` for dataset details
+"""
+
+from . import _maker
+
+dataset = _maker("fold_5")
diff --git a/src/ptbench/configs/datasets/tbx11k_simplified_RS/fold_6.py b/src/ptbench/configs/datasets/tbx11k_simplified_RS/fold_6.py
new file mode 100644
index 0000000000000000000000000000000000000000..f88776c9d0fb877e48cb555984bd2724a68af3ac
--- /dev/null
+++ b/src/ptbench/configs/datasets/tbx11k_simplified_RS/fold_6.py
@@ -0,0 +1,17 @@
+# Copyright © 2022 Idiap Research Institute <contact@idiap.ch>
+#
+# SPDX-License-Identifier: GPL-3.0-or-later
+
+"""TBX11k simplified dataset for TB detection (default protocol)
+
+* Split reference: first 62.5% of TB and healthy CXR for "train" 15.9% for
+* "validation", 21.6% for "test"
+* This split only consists of healthy and active TB samples
+* "Latent TB" or "sick & non-TB" samples are not included in this configuration
+* This configuration resolution: 512 x 512 (default)
+* See :py:mod:`ptbench.data.tbx11k` for dataset details
+"""
+
+from . import _maker
+
+dataset = _maker("fold_6")
diff --git a/src/ptbench/configs/datasets/tbx11k_simplified_RS/fold_7.py b/src/ptbench/configs/datasets/tbx11k_simplified_RS/fold_7.py
new file mode 100644
index 0000000000000000000000000000000000000000..756dc9c877ec3f14950b5406c7ecaa7036b8d9c0
--- /dev/null
+++ b/src/ptbench/configs/datasets/tbx11k_simplified_RS/fold_7.py
@@ -0,0 +1,17 @@
+# Copyright © 2022 Idiap Research Institute <contact@idiap.ch>
+#
+# SPDX-License-Identifier: GPL-3.0-or-later
+
+"""TBX11k simplified dataset for TB detection (default protocol)
+
+* Split reference: first 62.5% of TB and healthy CXR for "train" 15.9% for
+* "validation", 21.6% for "test"
+* This split only consists of healthy and active TB samples
+* "Latent TB" or "sick & non-TB" samples are not included in this configuration
+* This configuration resolution: 512 x 512 (default)
+* See :py:mod:`ptbench.data.tbx11k` for dataset details
+"""
+
+from . import _maker
+
+dataset = _maker("fold_7")
diff --git a/src/ptbench/configs/datasets/tbx11k_simplified_RS/fold_8.py b/src/ptbench/configs/datasets/tbx11k_simplified_RS/fold_8.py
new file mode 100644
index 0000000000000000000000000000000000000000..1b267cd5dfe004bf11217a0ac61489b9de8f720d
--- /dev/null
+++ b/src/ptbench/configs/datasets/tbx11k_simplified_RS/fold_8.py
@@ -0,0 +1,17 @@
+# Copyright © 2022 Idiap Research Institute <contact@idiap.ch>
+#
+# SPDX-License-Identifier: GPL-3.0-or-later
+
+"""TBX11k simplified dataset for TB detection (default protocol)
+
+* Split reference: first 62.5% of TB and healthy CXR for "train" 15.9% for
+* "validation", 21.6% for "test"
+* This split only consists of healthy and active TB samples
+* "Latent TB" or "sick & non-TB" samples are not included in this configuration
+* This configuration resolution: 512 x 512 (default)
+* See :py:mod:`ptbench.data.tbx11k` for dataset details
+"""
+
+from . import _maker
+
+dataset = _maker("fold_8")
diff --git a/src/ptbench/configs/datasets/tbx11k_simplified_RS/fold_9.py b/src/ptbench/configs/datasets/tbx11k_simplified_RS/fold_9.py
new file mode 100644
index 0000000000000000000000000000000000000000..74696cf6f8fc31d0bfcbc3c4e63bcf51571cdb2f
--- /dev/null
+++ b/src/ptbench/configs/datasets/tbx11k_simplified_RS/fold_9.py
@@ -0,0 +1,17 @@
+# Copyright © 2022 Idiap Research Institute <contact@idiap.ch>
+#
+# SPDX-License-Identifier: GPL-3.0-or-later
+
+"""TBX11k simplified dataset for TB detection (default protocol)
+
+* Split reference: first 62.5% of TB and healthy CXR for "train" 15.9% for
+* "validation", 21.6% for "test"
+* This split only consists of healthy and active TB samples
+* "Latent TB" or "sick & non-TB" samples are not included in this configuration
+* This configuration resolution: 512 x 512 (default)
+* See :py:mod:`ptbench.data.tbx11k` for dataset details
+"""
+
+from . import _maker
+
+dataset = _maker("fold_9")
diff --git a/src/ptbench/data/tbx11k_simplified/__init__.py b/src/ptbench/data/tbx11k_simplified/__init__.py
index aa5abf05b9fc6f698d6451f48fbf2fd89e2106d4..0b47442003653f438592fa001ab005a363da086c 100644
--- a/src/ptbench/data/tbx11k_simplified/__init__.py
+++ b/src/ptbench/data/tbx11k_simplified/__init__.py
@@ -32,16 +32,16 @@ from ..loader import load_pil_baw, make_delayed
_protocols = [
importlib.resources.files(__name__).joinpath("default.json.bz2"),
- # importlib.resources.files(__name__).joinpath("fold_0.json.bz2"),
- # importlib.resources.files(__name__).joinpath("fold_1.json.bz2"),
- # importlib.resources.files(__name__).joinpath("fold_2.json.bz2"),
- # importlib.resources.files(__name__).joinpath("fold_3.json.bz2"),
- # importlib.resources.files(__name__).joinpath("fold_4.json.bz2"),
- # importlib.resources.files(__name__).joinpath("fold_5.json.bz2"),
- # importlib.resources.files(__name__).joinpath("fold_6.json.bz2"),
- # importlib.resources.files(__name__).joinpath("fold_7.json.bz2"),
- # importlib.resources.files(__name__).joinpath("fold_8.json.bz2"),
- # importlib.resources.files(__name__).joinpath("fold_9.json.bz2"),
+ importlib.resources.files(__name__).joinpath("fold_0.json.bz2"),
+ importlib.resources.files(__name__).joinpath("fold_1.json.bz2"),
+ importlib.resources.files(__name__).joinpath("fold_2.json.bz2"),
+ importlib.resources.files(__name__).joinpath("fold_3.json.bz2"),
+ importlib.resources.files(__name__).joinpath("fold_4.json.bz2"),
+ importlib.resources.files(__name__).joinpath("fold_5.json.bz2"),
+ importlib.resources.files(__name__).joinpath("fold_6.json.bz2"),
+ importlib.resources.files(__name__).joinpath("fold_7.json.bz2"),
+ importlib.resources.files(__name__).joinpath("fold_8.json.bz2"),
+ importlib.resources.files(__name__).joinpath("fold_9.json.bz2"),
]
_datadir = load_rc().get(
diff --git a/src/ptbench/data/tbx11k_simplified/fold_0.json.bz2 b/src/ptbench/data/tbx11k_simplified/fold_0.json.bz2
new file mode 100644
index 0000000000000000000000000000000000000000..4463da3f0d7e6a8dfe15cd699d626ef335cb182b
Binary files /dev/null and b/src/ptbench/data/tbx11k_simplified/fold_0.json.bz2 differ
diff --git a/src/ptbench/data/tbx11k_simplified/fold_1.json.bz2 b/src/ptbench/data/tbx11k_simplified/fold_1.json.bz2
new file mode 100644
index 0000000000000000000000000000000000000000..c4a712decdeab35f8a9b0c488fcc9155e4478e56
Binary files /dev/null and b/src/ptbench/data/tbx11k_simplified/fold_1.json.bz2 differ
diff --git a/src/ptbench/data/tbx11k_simplified/fold_2.json.bz2 b/src/ptbench/data/tbx11k_simplified/fold_2.json.bz2
new file mode 100644
index 0000000000000000000000000000000000000000..5c6bdd7684adf0f995cd15271f64f793e97e7505
Binary files /dev/null and b/src/ptbench/data/tbx11k_simplified/fold_2.json.bz2 differ
diff --git a/src/ptbench/data/tbx11k_simplified/fold_3.json.bz2 b/src/ptbench/data/tbx11k_simplified/fold_3.json.bz2
new file mode 100644
index 0000000000000000000000000000000000000000..738a75b4ced0ccf953887f857a3ce1dab8c4a501
Binary files /dev/null and b/src/ptbench/data/tbx11k_simplified/fold_3.json.bz2 differ
diff --git a/src/ptbench/data/tbx11k_simplified/fold_4.json.bz2 b/src/ptbench/data/tbx11k_simplified/fold_4.json.bz2
new file mode 100644
index 0000000000000000000000000000000000000000..dfe34d4b1b8ec43fd36f24b47f676a65a6569ce2
Binary files /dev/null and b/src/ptbench/data/tbx11k_simplified/fold_4.json.bz2 differ
diff --git a/src/ptbench/data/tbx11k_simplified/fold_5.json.bz2 b/src/ptbench/data/tbx11k_simplified/fold_5.json.bz2
new file mode 100644
index 0000000000000000000000000000000000000000..c88efb07aed02ec7856e4b933d8d0e3c5a0d4f79
Binary files /dev/null and b/src/ptbench/data/tbx11k_simplified/fold_5.json.bz2 differ
diff --git a/src/ptbench/data/tbx11k_simplified/fold_6.json.bz2 b/src/ptbench/data/tbx11k_simplified/fold_6.json.bz2
new file mode 100644
index 0000000000000000000000000000000000000000..6f4dc219979fb063ba935c94e930ebb54e242001
Binary files /dev/null and b/src/ptbench/data/tbx11k_simplified/fold_6.json.bz2 differ
diff --git a/src/ptbench/data/tbx11k_simplified/fold_7.json.bz2 b/src/ptbench/data/tbx11k_simplified/fold_7.json.bz2
new file mode 100644
index 0000000000000000000000000000000000000000..b632c2d24fde97542f3bc71b486221c64b373a55
Binary files /dev/null and b/src/ptbench/data/tbx11k_simplified/fold_7.json.bz2 differ
diff --git a/src/ptbench/data/tbx11k_simplified/fold_8.json.bz2 b/src/ptbench/data/tbx11k_simplified/fold_8.json.bz2
new file mode 100644
index 0000000000000000000000000000000000000000..c1307ff0a76c7613b9c28b9a87f9ab5d4c085406
Binary files /dev/null and b/src/ptbench/data/tbx11k_simplified/fold_8.json.bz2 differ
diff --git a/src/ptbench/data/tbx11k_simplified/fold_9.json.bz2 b/src/ptbench/data/tbx11k_simplified/fold_9.json.bz2
new file mode 100644
index 0000000000000000000000000000000000000000..c94fbf01598c0179e52794606e4643db81963ee0
Binary files /dev/null and b/src/ptbench/data/tbx11k_simplified/fold_9.json.bz2 differ
diff --git a/tests/test_11k.py b/tests/test_11k.py
index e418f700fe57b220a22f93ab9d4afdd4dbd40bc2..9f795f5f6fb4d858eb4300289b505f609db1170e 100644
--- a/tests/test_11k.py
+++ b/tests/test_11k.py
@@ -39,65 +39,35 @@ def test_protocol_consistency():
for s in subset["test"]:
assert s.label in [0.0, 1.0]
- # Cross-validation fold 0-7
- #for f in range(8):
- # subset = dataset.subsets("fold_" + str(f))
- # assert len(subset) == 3
- #
- # assert "train" in subset
- # assert len(subset["train"]) == 99
- # for s in subset["train"]:
- # assert s.key.startswith("CXR_png/MCUCXR_0")
- #
- # assert "validation" in subset
- # assert len(subset["validation"]) == 25
- # for s in subset["validation"]:
- # assert s.key.startswith("CXR_png/MCUCXR_0")
- #
- # assert "test" in subset
- # assert len(subset["test"]) == 14
- # for s in subset["test"]:
- # assert s.key.startswith("CXR_png/MCUCXR_0")
- #
- # Check labels
- # for s in subset["train"]:
- # assert s.label in [0.0, 1.0]
- #
- # for s in subset["validation"]:
- # assert s.label in [0.0, 1.0]
- #
- # for s in subset["test"]:
- # assert s.label in [0.0, 1.0]
- #
- # Cross-validation fold 8-9
- #for f in range(8, 10):
- # subset = dataset.subsets("fold_" + str(f))
- # assert len(subset) == 3
- #
- # assert "train" in subset
- # assert len(subset["train"]) == 100
- # for s in subset["train"]:
- # assert s.key.startswith("CXR_png/MCUCXR_0")
- #
- # assert "validation" in subset
- # assert len(subset["validation"]) == 25
- # for s in subset["validation"]:
- # assert s.key.startswith("CXR_png/MCUCXR_0")
- #
- # assert "test" in subset
- # assert len(subset["test"]) == 13
- # for s in subset["test"]:
- # assert s.key.startswith("CXR_png/MCUCXR_0")
- #
+ # Cross-validation fold 0-9
+ for f in range(10):
+ subset = dataset.subsets("fold_" + str(f))
+ assert len(subset) == 3
+
+ assert "train" in subset
+ assert len(subset["train"]) == 3177
+ for s in subset["train"]:
+ assert s.key.startswith("images/")
+
+ assert "validation" in subset
+ assert len(subset["validation"]) == 810
+ for s in subset["validation"]:
+ assert s.key.startswith("images/")
+
+ assert "test" in subset
+ assert len(subset["test"]) == 443
+ for s in subset["test"]:
+ assert s.key.startswith("images/")
+
# Check labels
- # for s in subset["train"]:
- # assert s.label in [0.0, 1.0]
- #
- # for s in subset["validation"]:
- # assert s.label in [0.0, 1.0]
- #
- # for s in subset["test"]:
- # assert s.label in [0.0, 1.0]
+ for s in subset["train"]:
+ assert s.label in [0.0, 1.0]
+
+ for s in subset["validation"]:
+ assert s.label in [0.0, 1.0]
+
+ for s in subset["test"]:
+ assert s.label in [0.0, 1.0]
@pytest.mark.skip_if_rc_var_not_set("datadir.tbx11k_simplified")