From b3fb537f29e50c29503add8392ad04c69312d308 Mon Sep 17 00:00:00 2001
From: dcarron <daniel.carron@idiap.ch>
Date: Mon, 22 Apr 2024 12:15:57 +0200
Subject: [PATCH] [test] Update paths
---
src/mednet/scripts/experiment.py | 2 +-
tests/test_cli.py | 13 +++++++------
2 files changed, 8 insertions(+), 7 deletions(-)
diff --git a/src/mednet/scripts/experiment.py b/src/mednet/scripts/experiment.py
index 9f7aff12..538ddf63 100644
--- a/src/mednet/scripts/experiment.py
+++ b/src/mednet/scripts/experiment.py
@@ -141,7 +141,7 @@ def experiment(
ctx.invoke(
evaluate,
predictions=predictions_output,
- output=output_folder,
+ output_folder=output_folder,
threshold="validation",
)
diff --git a/tests/test_cli.py b/tests/test_cli.py
index e4923621..4ee0e2c6 100644
--- a/tests/test_cli.py
+++ b/tests/test_cli.py
@@ -404,23 +404,24 @@ def test_evaluate_pasa_montgomery(temporary_basedir):
with stdout_logging() as buf:
prediction_path = temporary_basedir / "predictions.json"
- output_path = temporary_basedir / "evaluation.json"
+ evaluation_filename = "evaluation.json"
+ evaluation_file = temporary_basedir / evaluation_filename
result = runner.invoke(
evaluate,
[
"-vv",
"montgomery",
f"--predictions={str(prediction_path)}",
- f"--output={str(output_path)}",
+ f"--output-folder={str(temporary_basedir)}",
"--threshold=test",
],
)
_assert_exit_0(result)
- assert output_path.exists()
- assert output_path.with_suffix(".meta.json").exists()
- assert output_path.with_suffix(".rst").exists()
- assert output_path.with_suffix(".pdf").exists()
+ assert evaluation_file.exists()
+ assert evaluation_file.with_suffix(".meta.json").exists()
+ assert evaluation_file.with_suffix(".rst").exists()
+ assert evaluation_file.with_suffix(".pdf").exists()
keywords = {
r"^Setting --threshold=.*$": 1,
--
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