diff --git a/src/mednet/libs/common/scripts/train_analysis.py b/src/mednet/libs/common/scripts/train_analysis.py index bf3efe885b7b9f374dc96bd6035c46881b2f279b..65350228a77528575802ed1191adab96c287688a 100644 --- a/src/mednet/libs/common/scripts/train_analysis.py +++ b/src/mednet/libs/common/scripts/train_analysis.py @@ -6,7 +6,7 @@ import pathlib import typing import click -from clapper.click import ResourceOption, verbosity_option +from clapper.click import verbosity_option from clapper.logging import setup from .click import ConfigCommand @@ -220,6 +220,7 @@ def _create_figures( writable=True, path_type=pathlib.Path, ), + default="results", ) @verbosity_option(logger=logger, expose_value=False) def train_analysis( diff --git a/src/mednet/libs/segmentation/scripts/cli.py b/src/mednet/libs/segmentation/scripts/cli.py index 82aaed41dff680f167236d07e9f67495447c88e3..52ce017f997cc9bc0678378a671aea0da97cde9e 100644 --- a/src/mednet/libs/segmentation/scripts/cli.py +++ b/src/mednet/libs/segmentation/scripts/cli.py @@ -2,6 +2,8 @@ # # SPDX-License-Identifier: GPL-3.0-or-later +import importlib + import click from clapper.click import AliasedGroup @@ -38,4 +40,9 @@ segmentation.add_command(database.database) # segmentation.add_command(predict.predict) # segmentation.add_command(significance.significance) segmentation.add_command(train.train) -# segmentation.add_command(train_analysis.train_analysis) +segmentation.add_command( + importlib.import_module( + "mednet.libs.common.scripts.train_analysis", + package=__name__, + ).train_analysis, +)