From 8f49c23d50b64af7579e372189bf4d9556d749fa Mon Sep 17 00:00:00 2001
From: dcarron <daniel.carron@idiap.ch>
Date: Tue, 14 May 2024 14:47:34 +0200
Subject: [PATCH] [chore] Fix typo
---
src/mednet/libs/classification/tests/test_hivtb.py | 6 +++---
src/mednet/libs/classification/tests/test_indian.py | 6 +++---
src/mednet/libs/classification/tests/test_montgomery.py | 6 +++---
src/mednet/libs/classification/tests/test_nih_cxr14.py | 6 +++---
src/mednet/libs/classification/tests/test_padchest.py | 6 +++---
src/mednet/libs/classification/tests/test_shenzhen.py | 6 +++---
src/mednet/libs/classification/tests/test_tbpoc.py | 6 +++---
src/mednet/libs/classification/tests/test_tbx11k.py | 6 +++---
8 files changed, 24 insertions(+), 24 deletions(-)
diff --git a/src/mednet/libs/classification/tests/test_hivtb.py b/src/mednet/libs/classification/tests/test_hivtb.py
index cebf9f9a..2075f91a 100644
--- a/src/mednet/libs/classification/tests/test_hivtb.py
+++ b/src/mednet/libs/classification/tests/test_hivtb.py
@@ -16,7 +16,7 @@ def id_function(val):
@pytest.mark.parametrize(
- "split,lenghts",
+ "split,lengths",
[
("fold-0", dict(train=174, validation=44, test=25)),
("fold-1", dict(train=174, validation=44, test=25)),
@@ -34,13 +34,13 @@ def id_function(val):
def test_protocol_consistency(
database_checkers,
split: str,
- lenghts: dict[str, int],
+ lengths: dict[str, int],
):
from mednet.libs.common.data.split import make_split
database_checkers.check_split(
make_split("mednet.config.data.hivtb", f"{split}.json"),
- lengths=lenghts,
+ lengths=lengths,
prefixes=("HIV-TB_Algorithm_study_X-rays",),
possible_labels=(0, 1),
)
diff --git a/src/mednet/libs/classification/tests/test_indian.py b/src/mednet/libs/classification/tests/test_indian.py
index e5ca853d..c55f82b3 100644
--- a/src/mednet/libs/classification/tests/test_indian.py
+++ b/src/mednet/libs/classification/tests/test_indian.py
@@ -19,7 +19,7 @@ def id_function(val):
@pytest.mark.parametrize(
- "split,lenghts",
+ "split,lengths",
[
("default", dict(train=84, validation=20, test=52)),
("fold-0", dict(train=111, validation=28, test=17)),
@@ -38,13 +38,13 @@ def id_function(val):
def test_protocol_consistency(
database_checkers,
split: str,
- lenghts: dict[str, int],
+ lengths: dict[str, int],
):
from mednet.libs.common.data.split import make_split
database_checkers.check_split(
make_split("mednet.config.data.indian", f"{split}.json"),
- lengths=lenghts,
+ lengths=lengths,
prefixes=("DatasetA/Training", "DatasetA/Testing"),
possible_labels=(0, 1),
)
diff --git a/src/mednet/libs/classification/tests/test_montgomery.py b/src/mednet/libs/classification/tests/test_montgomery.py
index 102b232a..24ff0c9e 100644
--- a/src/mednet/libs/classification/tests/test_montgomery.py
+++ b/src/mednet/libs/classification/tests/test_montgomery.py
@@ -17,7 +17,7 @@ def id_function(val):
@pytest.mark.parametrize(
- "split,lenghts",
+ "split,lengths",
[
("default", dict(train=88, validation=22, test=28)),
("fold-0", dict(train=99, validation=25, test=14)),
@@ -36,13 +36,13 @@ def id_function(val):
def test_protocol_consistency(
database_checkers,
split: str,
- lenghts: dict[str, int],
+ lengths: dict[str, int],
):
from mednet.libs.common.data.split import make_split
database_checkers.check_split(
make_split("mednet.config.data.montgomery", f"{split}.json"),
- lengths=lenghts,
+ lengths=lengths,
prefixes=("CXR_png/MCUCXR_0",),
possible_labels=(0, 1),
)
diff --git a/src/mednet/libs/classification/tests/test_nih_cxr14.py b/src/mednet/libs/classification/tests/test_nih_cxr14.py
index 4c8c8f38..e3466a8f 100644
--- a/src/mednet/libs/classification/tests/test_nih_cxr14.py
+++ b/src/mednet/libs/classification/tests/test_nih_cxr14.py
@@ -16,7 +16,7 @@ def id_function(val):
@pytest.mark.parametrize(
- "split,lenghts",
+ "split,lengths",
[
("default.json.bz2", dict(train=98637, validation=6350, test=4054)),
("cardiomegaly.json", dict(train=40, validation=40)),
@@ -26,13 +26,13 @@ def id_function(val):
def test_protocol_consistency(
database_checkers,
split: str,
- lenghts: dict[str, int],
+ lengths: dict[str, int],
):
from mednet.libs.common.data.split import make_split
database_checkers.check_split(
make_split("mednet.config.data.nih_cxr14", f"{split}"),
- lengths=lenghts,
+ lengths=lengths,
prefixes=("images/000",),
possible_labels=(0, 1),
)
diff --git a/src/mednet/libs/classification/tests/test_padchest.py b/src/mednet/libs/classification/tests/test_padchest.py
index abbc51b3..8e420e17 100644
--- a/src/mednet/libs/classification/tests/test_padchest.py
+++ b/src/mednet/libs/classification/tests/test_padchest.py
@@ -16,7 +16,7 @@ def id_function(val):
@pytest.mark.parametrize(
- "split,lenghts",
+ "split,lengths",
[
# ("idiap.json.bz2", dict(train=96269)), ## many labels
("tb-idiap.json", dict(train=200, test=50)), # 0: no-tb, 1: tb
@@ -31,13 +31,13 @@ def id_function(val):
def test_protocol_consistency(
database_checkers,
split: str,
- lenghts: dict[str, int],
+ lengths: dict[str, int],
):
from mednet.libs.common.data.split import make_split
database_checkers.check_split(
make_split("mednet.config.data.padchest", split),
- lengths=lenghts,
+ lengths=lengths,
prefixes=("",),
possible_labels=(0, 1),
)
diff --git a/src/mednet/libs/classification/tests/test_shenzhen.py b/src/mednet/libs/classification/tests/test_shenzhen.py
index ef77906a..ec40545a 100644
--- a/src/mednet/libs/classification/tests/test_shenzhen.py
+++ b/src/mednet/libs/classification/tests/test_shenzhen.py
@@ -16,7 +16,7 @@ def id_function(val):
@pytest.mark.parametrize(
- "split,lenghts",
+ "split,lengths",
[
("default", dict(train=422, validation=107, test=133)),
("fold-0", dict(train=476, validation=119, test=67)),
@@ -35,13 +35,13 @@ def id_function(val):
def test_protocol_consistency(
database_checkers,
split: str,
- lenghts: dict[str, int],
+ lengths: dict[str, int],
):
from mednet.libs.common.data.split import make_split
database_checkers.check_split(
make_split("mednet.config.data.shenzhen", f"{split}.json"),
- lengths=lenghts,
+ lengths=lengths,
prefixes=("CXR_png/CHNCXR_0",),
possible_labels=(0, 1),
)
diff --git a/src/mednet/libs/classification/tests/test_tbpoc.py b/src/mednet/libs/classification/tests/test_tbpoc.py
index 4447c809..3fa56240 100644
--- a/src/mednet/libs/classification/tests/test_tbpoc.py
+++ b/src/mednet/libs/classification/tests/test_tbpoc.py
@@ -16,7 +16,7 @@ def id_function(val):
@pytest.mark.parametrize(
- "split,lenghts",
+ "split,lengths",
[
("fold-0", dict(train=292, validation=74, test=41)),
("fold-1", dict(train=292, validation=74, test=41)),
@@ -34,13 +34,13 @@ def id_function(val):
def test_protocol_consistency(
database_checkers,
split: str,
- lenghts: dict[str, int],
+ lengths: dict[str, int],
):
from mednet.libs.common.data.split import make_split
database_checkers.check_split(
make_split("mednet.config.data.tbpoc", f"{split}.json"),
- lengths=lenghts,
+ lengths=lengths,
prefixes=(
"TBPOC_CXR/TBPOC-",
"TBPOC_CXR/tbpoc-",
diff --git a/src/mednet/libs/classification/tests/test_tbx11k.py b/src/mednet/libs/classification/tests/test_tbx11k.py
index 0f9a5884..be965f9a 100644
--- a/src/mednet/libs/classification/tests/test_tbx11k.py
+++ b/src/mednet/libs/classification/tests/test_tbx11k.py
@@ -18,7 +18,7 @@ def id_function(val):
@pytest.mark.parametrize(
- "split,lenghts,prefixes",
+ "split,lengths,prefixes",
[
(
"v1-healthy-vs-atb",
@@ -136,14 +136,14 @@ def id_function(val):
def test_protocol_consistency(
database_checkers,
split: str,
- lenghts: dict[str, int],
+ lengths: dict[str, int],
prefixes: typing.Sequence[str],
):
from mednet.libs.common.data.split import make_split
database_checkers.check_split(
make_split("mednet.config.data.tbx11k", f"{split}.json"),
- lengths=lenghts,
+ lengths=lengths,
prefixes=prefixes,
possible_labels=(0, 1),
)
--
GitLab