diff --git a/pixi.lock b/pixi.lock
index ba1c251363cbc7af1c1350432d5a78beb77882bd..9506ce778cd6a35e88e1c74910a7a24aa45bd658 100644
--- a/pixi.lock
+++ b/pixi.lock
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- - furo>=2024.5.6 ; extra == 'doc'
- - sphinx ; extra == 'doc'
- - sphinx-autodoc-typehints ; extra == 'doc'
- - sphinx-click ; extra == 'doc'
- - sphinx-copybutton ; extra == 'doc'
- - sphinx-inline-tabs ; extra == 'doc'
- - sphobjinv ; extra == 'doc'
- - pre-commit ; extra == 'qa'
- - pytest ; extra == 'test'
- - pytest-cov ; extra == 'test'
- requires_python: '>=3.10'
- editable: true
-- kind: pypi
- name: mednet
- version: 1.0.1.dev5+gff3d1571
- path: .
- sha256: e6d8566f01365b13a9195d4eaaa66db602b300b62809a2684226b02c5c1943f1
- requires_dist:
- - clapper
- - click
- - credible
- - grad-cam~=1.5.3
- - h5py
- - lightning~=2.4.0
- - matplotlib
- - mlflow-skinny
- - numpy
- - pillow
- - psutil
- - python-gitlab
- - scikit-image
- - scikit-learn
- - scipy
- - tabulate
- - tensorboard
- - torchio
- - torchvision~=0.18.0
- - torch~=2.3.0
+ - torchvision>=0.18.0
- tqdm
- versioningit
- auto-intersphinx ; extra == 'doc'
@@ -16435,7 +16392,7 @@ packages:
license: BSD-3-Clause
license_family: BSD
purls:
- - pkg:pypi/nodeenv?source=compressed-mapping
+ - pkg:pypi/nodeenv?source=hash-mapping
size: 34489
timestamp: 1717585382642
- kind: conda
@@ -18028,7 +17985,7 @@ packages:
license: MIT
license_family: MIT
purls:
- - pkg:pypi/pytest?source=compressed-mapping
+ - pkg:pypi/pytest?source=hash-mapping
size: 257671
timestamp: 1721923749407
- kind: conda
@@ -19079,7 +19036,7 @@ packages:
license: MIT
license_family: MIT
purls:
- - pkg:pypi/rpds-py?source=compressed-mapping
+ - pkg:pypi/rpds-py?source=hash-mapping
size: 293550
timestamp: 1723039666429
- kind: conda
@@ -19669,7 +19626,24 @@ packages:
license: MIT
license_family: MIT
purls:
- - pkg:pypi/setuptools?source=compressed-mapping
+ - pkg:pypi/autocommand?source=hash-mapping
+ - pkg:pypi/backports-tarfile?source=hash-mapping
+ - pkg:pypi/importlib-metadata?source=hash-mapping
+ - pkg:pypi/importlib-resources?source=hash-mapping
+ - pkg:pypi/inflect?source=hash-mapping
+ - pkg:pypi/jaraco-context?source=hash-mapping
+ - pkg:pypi/jaraco-functools?source=hash-mapping
+ - pkg:pypi/jaraco-text?source=hash-mapping
+ - pkg:pypi/more-itertools?source=hash-mapping
+ - pkg:pypi/ordered-set?source=hash-mapping
+ - pkg:pypi/packaging?source=hash-mapping
+ - pkg:pypi/platformdirs?source=hash-mapping
+ - pkg:pypi/setuptools?source=hash-mapping
+ - pkg:pypi/tomli?source=hash-mapping
+ - pkg:pypi/typeguard?source=hash-mapping
+ - pkg:pypi/typing-extensions?source=hash-mapping
+ - pkg:pypi/wheel?source=hash-mapping
+ - pkg:pypi/zipp?source=hash-mapping
size: 1459799
timestamp: 1724163617860
- kind: conda
@@ -20124,7 +20098,7 @@ packages:
license: BSD-2-Clause
license_family: BSD
purls:
- - pkg:pypi/sphinxcontrib-devhelp?source=compressed-mapping
+ - pkg:pypi/sphinxcontrib-devhelp?source=hash-mapping
size: 24138
timestamp: 1722245127289
- kind: conda
@@ -20142,7 +20116,7 @@ packages:
license: BSD-2-Clause
license_family: BSD
purls:
- - pkg:pypi/sphinxcontrib-htmlhelp?source=compressed-mapping
+ - pkg:pypi/sphinxcontrib-htmlhelp?source=hash-mapping
size: 32798
timestamp: 1722248429933
- kind: conda
@@ -20528,15 +20502,15 @@ packages:
- kind: conda
name: tiledb
version: 2.25.0
- build: h05a3d2a_7
- build_number: 7
+ build: h183c882_8
+ build_number: 8
subdir: osx-arm64
- url: https://conda.anaconda.org/conda-forge/osx-arm64/tiledb-2.25.0-h05a3d2a_7.conda
- sha256: 04f157f2a11c3c270076e139a7bc14061baf0a2613cc8a72d3832afc4d8d7ff4
- md5: 278d6e356a2faa8b70c346c5befb771c
+ url: https://conda.anaconda.org/conda-forge/osx-arm64/tiledb-2.25.0-h183c882_8.conda
+ sha256: dd0e5eec077e32002503b6b2743fb8f2840a0659e43782fba18e47cdfb36a045
+ md5: 587e6411934146745c0a3c7fef7bc1c7
depends:
- __osx >=11.0
- - aws-crt-cpp >=0.27.5,<0.27.6.0a0
+ - aws-crt-cpp >=0.27.6,<0.27.7.0a0
- aws-sdk-cpp >=1.11.379,<1.11.380.0a0
- azure-core-cpp >=1.13.0,<1.13.1.0a0
- azure-identity-cpp >=1.8.0,<1.8.1.0a0
@@ -20547,7 +20521,7 @@ packages:
- libabseil * cxx17*
- libabseil >=20240116.2,<20240117.0a0
- libcurl >=8.9.1,<9.0a0
- - libcxx >=16
+ - libcxx >=17
- libgoogle-cloud >=2.28.0,<2.29.0a0
- libgoogle-cloud-storage >=2.28.0,<2.29.0a0
- libwebp-base >=1.4.0,<2.0a0
@@ -20559,20 +20533,20 @@ packages:
license: MIT
license_family: MIT
purls: []
- size: 3528513
- timestamp: 1723475230910
+ size: 3547421
+ timestamp: 1724371658393
- kind: conda
name: tiledb
version: 2.25.0
- build: h213c483_7
- build_number: 7
+ build: h33a2d6f_8
+ build_number: 8
subdir: linux-64
- url: https://conda.anaconda.org/conda-forge/linux-64/tiledb-2.25.0-h213c483_7.conda
- sha256: 3d60651162fc1bd178791ad8b877e5dbadfdb34c6786cc5308a83e375959f639
- md5: 9d8f1988a2d0420abf75e06497667594
+ url: https://conda.anaconda.org/conda-forge/linux-64/tiledb-2.25.0-h33a2d6f_8.conda
+ sha256: 97e0dff22379b597882a22e03f54f509a07adae8dc857b1c1678ea17b3244db8
+ md5: 6fee617e35ff1545510ca2eaee69d341
depends:
- __glibc >=2.17,<3.0.a0
- - aws-crt-cpp >=0.27.5,<0.27.6.0a0
+ - aws-crt-cpp >=0.27.6,<0.27.7.0a0
- aws-sdk-cpp >=1.11.379,<1.11.380.0a0
- azure-core-cpp >=1.13.0,<1.13.1.0a0
- azure-identity-cpp >=1.8.0,<1.8.1.0a0
@@ -20583,10 +20557,10 @@ packages:
- libabseil * cxx17*
- libabseil >=20240116.2,<20240117.0a0
- libcurl >=8.9.1,<9.0a0
- - libgcc-ng >=12
+ - libgcc-ng >=13
- libgoogle-cloud >=2.28.0,<2.29.0a0
- libgoogle-cloud-storage >=2.28.0,<2.29.0a0
- - libstdcxx-ng >=12
+ - libstdcxx-ng >=13
- libwebp-base >=1.4.0,<2.0a0
- libzlib >=1.3.1,<2.0a0
- lz4-c >=1.9.3,<1.10.0a0
@@ -20596,8 +20570,8 @@ packages:
license: MIT
license_family: MIT
purls: []
- size: 4366120
- timestamp: 1723475383496
+ size: 4538440
+ timestamp: 1724371764828
- kind: conda
name: timm
version: 1.0.8
@@ -20617,7 +20591,7 @@ packages:
license: Apache-2.0
license_family: APACHE
purls:
- - pkg:pypi/timm?source=compressed-mapping
+ - pkg:pypi/timm?source=hash-mapping
size: 1424640
timestamp: 1722369797172
- kind: conda
diff --git a/pyproject.toml b/pyproject.toml
index dce245dbd170300ce1dabaf672310413f18db4d5..10b465db4aa5b88cf8662721323e3b57bbba14e7 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -32,8 +32,8 @@ dependencies = [
"clapper",
"click",
"credible",
- "grad-cam~=1.5.3",
- "lightning~=2.4.0",
+ "grad-cam>=1.5.0",
+ "lightning>=2.2.0",
"h5py",
"matplotlib",
"mlflow-skinny",
@@ -46,8 +46,8 @@ dependencies = [
"scipy",
"tabulate",
"tensorboard",
- "torchvision~=0.18.0",
- "torch~=2.3.0",
+ "torchvision>=0.18.0",
+ "torch",
"torchio",
"tqdm",
"versioningit",
@@ -88,8 +88,8 @@ linux = "4.19.0"
clapper = "*"
click = "*"
credible = "*"
-grad-cam = "~=1.5.3"
-lightning = "~=2.4.0"
+grad-cam = ">=1.5.0"
+lightning = ">=2.2.0"
h5py = "*"
matplotlib-base = "*"
mlflow-skinny = "*"
@@ -97,13 +97,13 @@ numpy = "<2"
pillow = "*"
psutil = "*"
python-gitlab = "*"
-pytorch = "~=2.3.0"
+pytorch = "*"
scikit-image = "*"
scikit-learn = "*"
scipy = "*"
tabulate = "*"
tensorboard = "*"
-torchvision = "~=0.18.0"
+torchvision = ">=0.18.0"
tqdm = "*"
versioningit = "*"
torchio = "*"