diff --git a/src/mednet/libs/segmentation/scripts/evaluate.py b/src/mednet/libs/segmentation/scripts/evaluate.py
index 00b8e8f3715dea0e640a3e33f5c2f55286394fbc..dbe12bb33a83f89f38d0d4e798912215e104d4fe 100644
--- a/src/mednet/libs/segmentation/scripts/evaluate.py
+++ b/src/mednet/libs/segmentation/scripts/evaluate.py
@@ -12,7 +12,7 @@ from clapper.logging import setup
from mednet.libs.common.scripts.click import ConfigCommand
from mednet.libs.segmentation.engine.evaluator import SUPPORTED_METRIC_TYPE
-logger = setup(__name__.split(".")[0], format="%(levelname)s: %(message)s")
+logger = setup("mednet")
def _validate_threshold(threshold: float | str, splits: list[str]):
diff --git a/tests/classification/data/histograms/models/histograms_densenet-121_montgomery_default.json b/tests/classification/data/histograms/models/histograms_densenet-121_montgomery_default.json
index fd42036faae9aea2233905d8ea3f09c59c0eeb3e..ec0144f52fcaaab0a7d5e3f897cba1a6ccd45586 100644
--- a/tests/classification/data/histograms/models/histograms_densenet-121_montgomery_default.json
+++ b/tests/classification/data/histograms/models/histograms_densenet-121_montgomery_default.json
@@ -1,950 +1,23 @@
{
"train": [
- [
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}
diff --git a/tests/segmentation/data/histograms/models/histograms_lwnet_montgomery_default.json b/tests/segmentation/data/histograms/models/histograms_lwnet_montgomery_default.json
index 969c77fb5b4a0f92d179dc6700392347b70cd33e..0406cf7171afbc2601d550b3fe96f7fe8f750614 100644
--- a/tests/segmentation/data/histograms/models/histograms_lwnet_montgomery_default.json
+++ b/tests/segmentation/data/histograms/models/histograms_lwnet_montgomery_default.json
@@ -1,23 +1,23 @@
{
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],
"test": [
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]
}
diff --git a/tests/segmentation/test_cli.py b/tests/segmentation/test_cli.py
index efddeff27f033f2493be8fb7eb002e205bf76db0..1fe22ed901ad7260af47dc9a9aad1d8d582a38b4 100644
--- a/tests/segmentation/test_cli.py
+++ b/tests/segmentation/test_cli.py
@@ -361,11 +361,15 @@ def test_evaluate_lwnet_drive(temporary_basedir):
assert (evaluation_path / "evaluation.rst").exists()
keywords = {
- r"^Analyzing split `train`...$": 1,
- r"^Analyzing split `test`...$": 1,
- r"^Creating and saving plot at .*$": 1,
+ r"^Writing run metadata at.*$": 1,
+ r"^Counting true/false positive/negatives at split.*$": 2,
+ r"^Writing run metadata at.*$": 1,
+ r"^Evaluating threshold on.*$": 1,
r"^Tabulating performance summary...": 1,
+ r"^Saving evaluation results at.*$": 1,
r"^Saving table at .*$": 1,
+ r"^Plotting performance curves...": 1,
+ r"^Saving figures at .*$": 1,
}
buf.seek(0)
logging_output = buf.read()